PubRank

Vladimir Brusic

Author PubWeight™ 98.73‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 HIV-1 broadly neutralizing antibody extracts its epitope from a kinked gp41 ectodomain region on the viral membrane. Immunity 2008 3.01
2 Evaluation of MHC class I peptide binding prediction servers: applications for vaccine research. BMC Immunol 2008 2.30
3 Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research. BMC Bioinformatics 2008 2.17
4 MULTIPRED: a computational system for prediction of promiscuous HLA binding peptides. Nucleic Acids Res 2005 2.05
5 Complete-proteome mapping of human influenza A adaptive mutations: implications for human transmissibility of zoonotic strains. PLoS One 2010 1.87
6 Dragon Promoter Finder: recognition of vertebrate RNA polymerase II promoters. Bioinformatics 2002 1.85
7 Evolutionarily conserved protein sequences of influenza a viruses, avian and human, as vaccine targets. PLoS One 2007 1.72
8 Identification of human-to-human transmissibility factors in PB2 proteins of influenza A by large-scale mutual information analysis. BMC Bioinformatics 2008 1.61
9 Methods for prediction of peptide binding to MHC molecules: a comparative study. Mol Med 2002 1.61
10 Comprehensive analysis of cancer-associated somatic mutations in class I HLA genes. Nat Biotechnol 2015 1.47
11 Hidden Markov model-based prediction of antigenic peptides that interact with MHC class II molecules. J Biosci Bioeng 2002 1.31
12 A systematic bioinformatics approach for selection of epitope-based vaccine targets. Cell Immunol 2007 1.30
13 Transcriptionally abundant major histocompatibility complex class I alleles are fundamental to nonhuman primate simian immunodeficiency virus-specific CD8+ T cell responses. J Virol 2011 1.24
14 Conservation and variability of dengue virus proteins: implications for vaccine design. PLoS Negl Trop Dis 2008 1.23
15 PREDBALB/c: a system for the prediction of peptide binding to H2d molecules, a haplotype of the BALB/c mouse. Nucleic Acids Res 2005 1.20
16 ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization. Brief Bioinform 2009 1.19
17 Supporting the curation of biological databases with reusable text mining. Genome Inform 2005 1.18
18 Machine learning competition in immunology - Prediction of HLA class I binding peptides. J Immunol Methods 2011 1.18
19 ImmunoGrid: towards agent-based simulations of the human immune system at a natural scale. Philos Trans A Math Phys Eng Sci 2010 1.16
20 Computer model for recognition of functional transcription start sites in RNA polymerase II promoters of vertebrates. J Mol Graph Model 2003 1.15
21 One NY-ESO-1-derived epitope that promiscuously binds to multiple HLA-DR and HLA-DP4 molecules and stimulates autologous CD4+ T cells from patients with NY-ESO-1-expressing melanoma. J Immunol 2005 1.15
22 SCORPION2: a database for structure-function analysis of scorpion toxins. Toxicon 2006 1.14
23 Combining cellular automata and Lattice Boltzmann method to model multiscale avascular tumor growth coupled with nutrient diffusion and immune competition. J Immunol Methods 2011 1.14
24 NY-ESO-1 119-143 is a promiscuous major histocompatibility complex class II T-helper epitope recognized by Th1- and Th2-type tumor-reactive CD4+ T cells. Cancer Res 2002 1.13
25 Ultra-high resolution HLA genotyping and allele discovery by highly multiplexed cDNA amplicon pyrosequencing. BMC Genomics 2012 1.12
26 Prediction of HLA-DQ3.2beta ligands: evidence of multiple registers in class II binding peptides. Bioinformatics 2006 1.10
27 CysView: protein classification based on cysteine pairing patterns. Nucleic Acids Res 2004 1.10
28 Graft-versus-leukemia antigen CML66 elicits coordinated B-cell and T-cell immunity after donor lymphocyte infusion. Clin Cancer Res 2010 1.09
29 Efficacious immune therapy in chronic myelogenous leukemia (CML) recognizes antigens that are expressed on CML progenitor cells. Cancer Res 2010 1.08
30 FIMM, a database of functional molecular immunology: update 2002. Nucleic Acids Res 2002 1.06
31 Predicting peptides binding to MHC class II molecules using multi-objective evolutionary algorithms. BMC Bioinformatics 2007 1.05
32 Serologic markers of effective tumor immunity against chronic lymphocytic leukemia include nonmutated B-cell antigens. Cancer Res 2010 1.04
33 Computational resources for high-dimensional immune analysis from the Human Immunology Project Consortium. Nat Biotechnol 2014 1.02
34 Neural models for predicting viral vaccine targets. J Bioinform Comput Biol 2005 1.00
35 A conserved E7-derived cytotoxic T lymphocyte epitope expressed on human papillomavirus 16-transformed HLA-A2+ epithelial cancers. J Biol Chem 2010 1.00
36 Pathogenic human thyroglobulin peptides in HLA-DR3 transgenic mouse model of autoimmune thyroiditis. Cell Immunol 2004 0.99
37 SARS coronavirus nucleocapsid immunodominant T-cell epitope cluster is common to both exogenous recombinant and endogenous DNA-encoded immunogens. Virology 2006 0.99
38 PRED(TAP): a system for prediction of peptide binding to the human transporter associated with antigen processing. Immunome Res 2006 0.98
39 Prediction of supertype-specific HLA class I binding peptides using support vector machines. J Immunol Methods 2007 0.98
40 Computational immunology: The coming of age. Immunol Cell Biol 2002 0.98
41 MULTIPRED2: a computational system for large-scale identification of peptides predicted to bind to HLA supertypes and alleles. J Immunol Methods 2010 0.98
42 BlockLogo: visualization of peptide and sequence motif conservation. J Immunol Methods 2013 0.96
43 MAGE-6 encodes HLA-DRbeta1*0401-presented epitopes recognized by CD4+ T cells from patients with melanoma or renal cell carcinoma. Clin Cancer Res 2003 0.96
44 Hotspot Hunter: a computational system for large-scale screening and selection of candidate immunological hotspots in pathogen proteomes. BMC Bioinformatics 2008 0.96
45 Dana-Farber repository for machine learning in immunology. J Immunol Methods 2011 0.93
46 Bioinformatics for venom and toxin sciences. Brief Bioinform 2003 0.93
47 Large-scale analysis of antigenic diversity of T-cell epitopes in dengue virus. BMC Bioinformatics 2006 0.92
48 Computational vaccinology and the ICoVax 2012 workshop. BMC Bioinformatics 2013 0.91
49 Diverse patterns of T-cell response against multiple newly identified human Y chromosome-encoded minor histocompatibility epitopes. Clin Cancer Res 2010 0.91
50 ALLERDB database and integrated bioinformatic tools for assessment of allergenicity and allergic cross-reactivity. Cell Immunol 2007 0.90
51 A concentration-dependent analysis method for high density protein microarrays. J Proteome Res 2008 0.90
52 Virtual models of the HLA class I antigen processing pathway. Methods 2004 0.89
53 The future for computational modelling and prediction systems in clinical immunology. Novartis Found Symp 2003 0.87
54 Mathematical modeling for novel cancer drug discovery and development. Expert Opin Drug Discov 2014 0.87
55 Direct identification of an HPV-16 tumor antigen from cervical cancer biopsy specimens. Front Immunol 2011 0.86
56 Mutated BCR-ABL generates immunogenic T-cell epitopes in CML patients. Clin Cancer Res 2012 0.86
57 Optimizing vaccine development. Cell Microbiol 2011 0.85
58 Conservation and variability of West Nile virus proteins. PLoS One 2009 0.85
59 In silico characterization of immunogenic epitopes presented by HLA-Cw*0401. Immunome Res 2007 0.84
60 Computational detection of vertebrate RNA polymerase II promoters. Methods Enzymol 2003 0.84
61 HPVdb: a data mining system for knowledge discovery in human papillomavirus with applications in T cell immunology and vaccinology. Database (Oxford) 2014 0.84
62 Rule-based knowledge aggregation for large-scale protein sequence analysis of influenza A viruses. BMC Bioinformatics 2008 0.83
63 A novel H2A-E+ transgenic model susceptible to human but not mouse thyroglobulin-induced autoimmune thyroiditis: identification of mouse pathogenic epitopes. Cell Immunol 2008 0.83
64 InCoB2012 Conference: from biological data to knowledge to technological breakthroughs. BMC Bioinformatics 2012 0.82
65 West Nile virus T-cell ligand sequences shared with other flaviviruses: a multitude of variant sequences as potential altered peptide ligands. J Virol 2012 0.82
66 An update on the functional molecular immunology (FIMM) database. Appl Bioinformatics 2005 0.81
67 Bioinformatic strategies for better understanding of immune function. In Silico Biol 2003 0.81
68 Conservation analysis of dengue virus T-cell epitope-based vaccine candidates using Peptide block entropy. Front Immunol 2011 0.81
69 Bioinformatics for cancer immunotherapy target discovery. Cancer Immunol Immunother 2014 0.80
70 Literature classification for semi-automated updating of biological knowledgebases. BMC Genomics 2013 0.80
71 Large-scale computational identification of HIV T-cell epitopes. Immunol Cell Biol 2002 0.80
72 Database resources for proteomics-based analysis of cancer. Methods Mol Biol 2011 0.80
73 Novel myeloma-associated antigens revealed in the context of syngeneic hematopoietic stem cell transplantation. Blood 2012 0.80
74 Data processing and analysis for protein microarrays. Methods Mol Biol 2011 0.79
75 The growth of bioinformatics. Brief Bioinform 2007 0.79
76 A computational method for identification of vaccine targets from protein regions of conserved human leukocyte antigen binding. BMC Med Genomics 2015 0.78
77 Impaired tumor antigen processing by immunoproteasome-expressing CD40-activated B cells and dendritic cells. Cancer Immunol Immunother 2011 0.78
78 Pathway analysis and transcriptomics improve protein identification by shotgun proteomics from samples comprising small number of cells--a benchmarking study. BMC Genomics 2014 0.78
79 Promiscuous T cell epitope prediction of Candida albicans secretory aspartyl protienase family of proteins. Infect Genet Evol 2007 0.78
80 PB1-F2 Finder: scanning influenza sequences for PB1-F2 encoding RNA segments. BMC Bioinformatics 2011 0.78
81 Tumor antigens as proteogenomic biomarkers in invasive ductal carcinomas. BMC Med Genomics 2014 0.78
82 Bioinformatics for study of autoimmunity. Autoimmunity 2006 0.77
83 In silico prediction and immunological validation of common HLA-DRB1-restricted T cell epitopes of Candida albicans secretory aspartyl proteinase 2. Microbiol Immunol 2008 0.77
84 A systematic analysis of a broadly neutralizing antibody AR3C epitopes on Hepatitis C virus E2 envelope glycoprotein and their cross-reactivity. BMC Med Genomics 2015 0.77
85 Identification of human leucocyte antigen (HLA)-A*0201-restricted cytotoxic T lymphocyte epitopes derived from HLA-DOβ as a novel target for multiple myeloma. Br J Haematol 2013 0.77
86 Using Gaussian process with test rejection to detect T-cell epitopes in pathogen genomes. IEEE/ACM Trans Comput Biol Bioinform 2010 0.77
87 Immune system modeling and related pathologies. Comput Math Methods Med 2012 0.77
88 Accurate prediction of scorpion toxin functional properties from primary structures. J Mol Graph Model 2005 0.77
89 Identification of "pathologs" (disease-related genes) from the RIKEN mouse cDNA dataset using human curation plus FACTS, a new biological information extraction system. BMC Genomics 2004 0.76
90 Systematic analysis of snake neurotoxins' functional classification using a data warehousing approach. Bioinformatics 2004 0.76
91 Proteins accessible to immune surveillance show significant T-cell epitope depletion: Implications for vaccine design. Mol Immunol 2009 0.76
92 Efficacy of HLA-DRB1∗03:01 and H2E transgenic mouse strains to correlate pathogenic thyroglobulin epitopes for autoimmune thyroiditis. J Autoimmun 2011 0.76
93 PREDNOD, a prediction server for peptide binding to the H-2g7 haplotype of the non-obese diabetic mouse. Autoimmunity 2006 0.76
94 Data mining of cancer vaccine trials: a bird's-eye view. Immunome Res 2008 0.75
95 An adaptive genetic algorithm for selection of blood-based biomarkers for prediction of Alzheimer's disease progression. BMC Bioinformatics 2015 0.75
96 Deduction of functional peptide motifs in scorpion toxins. J Pept Sci 2006 0.75
97 [Bioinformatics in Asia]. Tanpakushitsu Kakusan Koso 2004 0.75
98 Critical technologies for bioinformatics. Brief Bioinform 2008 0.75
99 Elemental metabolomics. Brief Bioinform 2017 0.75
100 Highlights of international conference of immunogenomics and immunomics, October 8-12, 2006 Budapest, Hungary. Cell Immunol 2007 0.75