Published in J Biotechnol on March 01, 2010
Structural identifiability of systems biology models: a critical comparison of methods. PLoS One (2011) 1.70
Reverse engineering and identification in systems biology: strategies, perspectives and challenges. J R Soc Interface (2013) 1.38
GenSSI: a software toolbox for structural identifiability analysis of biological models. Bioinformatics (2011) 1.06
Incremental parameter estimation of kinetic metabolic network models. BMC Syst Biol (2012) 1.01
Estimation of dynamic flux profiles from metabolic time series data. BMC Syst Biol (2012) 1.00
Ensemble kinetic modeling of metabolic networks from dynamic metabolic profiles. Metabolites (2012) 0.94
On the identifiability of metabolic network models. J Math Biol (2012) 0.93
Parameter estimation of dynamic biological network models using integrated fluxes. BMC Syst Biol (2014) 0.91
Ensemble inference and inferability of gene regulatory networks. PLoS One (2014) 0.90
BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology. BMC Syst Biol (2015) 0.86
Characterizability of metabolic pathway systems from time series data. Math Biosci (2013) 0.86
Identification of regulatory structure and kinetic parameters of biochemical networks via mixed-integer dynamic optimization. BMC Syst Biol (2013) 0.82
cuTauLeaping: a GPU-powered tau-leaping stochastic simulator for massive parallel analyses of biological systems. PLoS One (2014) 0.81
Slow and bimolecular folding of a de novo designed monomeric protein DS119. Biophys J (2013) 0.79
Simultaneous parameters identifiability and estimation of an E. coli metabolic network model. Biomed Res Int (2015) 0.77
Non-canonical Activation of Akt in Serum-Stimulated Fibroblasts, Revealed by Comparative Modeling of Pathway Dynamics. PLoS Comput Biol (2015) 0.75
REDEMPTION: reduced dimension ensemble modeling and parameter estimation. Bioinformatics (2015) 0.75
Parameter estimation in tree graph metabolic networks. PeerJ (2016) 0.75
The best models of metabolism. Wiley Interdiscip Rev Syst Biol Med (2017) 0.75
Iterative approach to model identification of biological networks. BMC Bioinformatics (2005) 1.80
Global parameter estimation methods for stochastic biochemical systems. BMC Bioinformatics (2010) 1.20
Parameter estimation of kinetic models from metabolic profiles: two-phase dynamic decoupling method. Bioinformatics (2011) 1.17
Incremental parameter estimation of kinetic metabolic network models. BMC Syst Biol (2012) 1.01
Sensitivity Measures for Oscillating Systems: Application to Mammalian Circadian Gene Network. IEEE Trans Automat Contr (2008) 0.98
Stochastic drift in mitochondrial DNA point mutations: a novel perspective ex silico. PLoS Comput Biol (2009) 0.90
Understanding dynamics using sensitivity analysis: caveat and solution. BMC Syst Biol (2011) 0.82
Role of direct repeat and stem-loop motifs in mtDNA deletions: cause or coincidence? PLoS One (2012) 0.81
Mathematical modeling of the role of mitochondrial fusion and fission in mitochondrial DNA maintenance. PLoS One (2013) 0.79
Is mitochondrial DNA turnover slower than commonly assumed? Biogerontology (2012) 0.78
Elucidating cytochrome C release from mitochondria: insights from an in silico three-dimensional model. Biophys J (2010) 0.78
Dynamical analysis of cellular networks based on the Green's function matrix. J Theor Biol (2009) 0.77
Maximizing signal-to-noise ratio in the random mutation capture assay. Nucleic Acids Res (2011) 0.75
Caenorhabditis elegans life span studies: the challenge of maintaining synchronous cohorts. Rejuvenation Res (2010) 0.75