| Rank |
Title |
Journal |
Year |
PubWeight™‹?› |
|
1
|
InterPro: the integrative protein signature database.
|
Nucleic Acids Res
|
2008
|
25.07
|
|
2
|
InterPro, progress and status in 2005.
|
Nucleic Acids Res
|
2005
|
17.53
|
|
3
|
InterPro in 2011: new developments in the family and domain prediction database.
|
Nucleic Acids Res
|
2011
|
13.45
|
|
4
|
New developments in the InterPro database.
|
Nucleic Acids Res
|
2007
|
12.49
|
|
5
|
The SUPERFAMILY database in 2004: additions and improvements.
|
Nucleic Acids Res
|
2004
|
6.72
|
|
6
|
A promoter-level mammalian expression atlas.
|
Nature
|
2014
|
6.25
|
|
7
|
An atlas of combinatorial transcriptional regulation in mouse and man.
|
Cell
|
2010
|
6.24
|
|
8
|
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.
|
Nat Genet
|
2009
|
6.02
|
|
9
|
A large-scale evaluation of computational protein function prediction.
|
Nat Methods
|
2013
|
4.61
|
|
10
|
The SUPERFAMILY database in 2007: families and functions.
|
Nucleic Acids Res
|
2006
|
4.27
|
|
11
|
Evolution of the protein repertoire.
|
Science
|
2003
|
4.24
|
|
12
|
A comparison of profile hidden Markov model procedures for remote homology detection.
|
Nucleic Acids Res
|
2002
|
3.76
|
|
13
|
Predicting the functional, molecular, and phenotypic consequences of amino acid substitutions using hidden Markov models.
|
Hum Mutat
|
2012
|
3.60
|
|
14
|
SUPERFAMILY 1.75 including a domain-centric gene ontology method.
|
Nucleic Acids Res
|
2010
|
3.34
|
|
15
|
SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny.
|
Nucleic Acids Res
|
2008
|
3.07
|
|
16
|
Mouse proteome analysis.
|
Genome Res
|
2003
|
2.69
|
|
17
|
Classification of intrinsically disordered regions and proteins.
|
Chem Rev
|
2014
|
2.48
|
|
18
|
Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs.
|
PLoS Genet
|
2006
|
2.48
|
|
19
|
Development and evaluation of an automated annotation pipeline and cDNA annotation system.
|
Genome Res
|
2003
|
2.15
|
|
20
|
Predicting the functional consequences of cancer-associated amino acid substitutions.
|
Bioinformatics
|
2013
|
2.12
|
|
21
|
Supra-domains: evolutionary units larger than single protein domains.
|
J Mol Biol
|
2004
|
1.82
|
|
22
|
Distinguishing protein-coding from non-coding RNAs through support vector machines.
|
PLoS Genet
|
2006
|
1.81
|
|
23
|
A database of bacterial lipoproteins (DOLOP) with functional assignments to predicted lipoproteins.
|
J Bacteriol
|
2006
|
1.76
|
|
24
|
D²P²: database of disordered protein predictions.
|
Nucleic Acids Res
|
2012
|
1.75
|
|
25
|
A phylogenomic profile of globins.
|
BMC Evol Biol
|
2006
|
1.64
|
|
26
|
Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains.
|
Nucleic Acids Res
|
2012
|
1.63
|
|
27
|
DcGO: database of domain-centric ontologies on functions, phenotypes, diseases and more.
|
Nucleic Acids Res
|
2012
|
1.47
|
|
28
|
TreeVector: scalable, interactive, phylogenetic trees for the web.
|
PLoS One
|
2010
|
1.45
|
|
29
|
Functional map and domain structure of MET, the product of the c-met protooncogene and receptor for hepatocyte growth factor/scatter factor.
|
Proc Natl Acad Sci U S A
|
2003
|
1.42
|
|
30
|
The evolution and structure prediction of coiled coils across all genomes.
|
J Mol Biol
|
2010
|
1.30
|
|
31
|
Genomic and structural aspects of protein evolution.
|
Biochem J
|
2009
|
1.25
|
|
32
|
Three globin lineages belonging to two structural classes in genomes from the three kingdoms of life.
|
Proc Natl Acad Sci U S A
|
2005
|
1.22
|
|
33
|
A daily-updated tree of (sequenced) life as a reference for genome research.
|
Sci Rep
|
2013
|
1.22
|
|
34
|
Classification, expression pattern, and E3 ligase activity assay of rice U-box-containing proteins.
|
Mol Plant
|
2008
|
1.07
|
|
35
|
Are viruses a source of new protein folds for organisms? - Virosphere structure space and evolution.
|
Bioessays
|
2011
|
1.01
|
|
36
|
Ranking non-synonymous single nucleotide polymorphisms based on disease concepts.
|
Hum Genomics
|
2014
|
0.98
|
|
37
|
A domain-centric solution to functional genomics via dcGO Predictor.
|
BMC Bioinformatics
|
2013
|
0.95
|
|
38
|
Improving protein secondary structure prediction using a simple k-mer model.
|
Bioinformatics
|
2010
|
0.93
|
|
39
|
Evolutionarily consistent families in SCOP: sequence, structure and function.
|
BMC Struct Biol
|
2012
|
0.92
|
|
40
|
Expression and in silico structural analysis of a rice (Oryza sativa) hemoglobin 5.
|
Plant Physiol Biochem
|
2008
|
0.90
|
|
41
|
A disease-drug-phenotype matrix inferred by walking on a functional domain network.
|
Mol Biosyst
|
2013
|
0.88
|
|
42
|
Proteins with class alpha/beta fold have high-level participation in fusion events.
|
J Mol Biol
|
2002
|
0.86
|
|
43
|
Sequences and topology: intrinsic disorder in the evolving universe of protein structure.
|
Curr Opin Struct Biol
|
2011
|
0.85
|
|
44
|
Comparison of the small molecule metabolic enzymes of Escherichia coli and Saccharomyces cerevisiae.
|
Genome Res
|
2002
|
0.85
|
|
45
|
Evolution of eukaryotic genome architecture: Insights from the study of a rapidly evolving metazoan, Oikopleura dioica: Non-adaptive forces such as elevated mutation rates may influence the evolution of genome architecture.
|
Bioessays
|
2011
|
0.81
|
|
46
|
Sequences and topology: disorder, modularity, and post/pre translation modification.
|
Curr Opin Struct Biol
|
2013
|
0.76
|
|
47
|
A proteome quality index.
|
Environ Microbiol
|
2014
|
0.75
|
|
48
|
DGEclust: differential expression analysis of clustered count data.
|
Genome Biol
|
2015
|
0.75
|