PubRank

Hideya Kawaji

Author PubWeight™ 83.01‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Genome-wide analysis of mammalian promoter architecture and evolution. Nat Genet 2006 17.19
2 Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage. Proc Natl Acad Sci U S A 2003 8.73
3 The Systems Biology Graphical Notation. Nat Biotechnol 2009 8.53
4 A promoter-level mammalian expression atlas. Nature 2014 6.25
5 An atlas of combinatorial transcriptional regulation in mouse and man. Cell 2010 6.24
6 The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nat Genet 2009 6.02
7 Mouse proteome analysis. Genome Res 2003 2.69
8 Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells. Science 2015 1.91
9 Unamplified cap analysis of gene expression on a single-molecule sequencer. Genome Res 2011 1.79
10 Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries. Genome Res 2010 1.73
11 Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages. Proc Natl Acad Sci U S A 2012 1.72
12 Gateways to the FANTOM5 promoter level mammalian expression atlas. Genome Biol 2015 1.58
13 Pseudo-messenger RNA: phantoms of the transcriptome. PLoS Genet 2006 1.46
14 The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies. J Biomed Semantics 2013 1.44
15 Analysis of the DNA methylome and transcriptome in granulopoiesis reveals timed changes and dynamic enhancer methylation. Blood 2014 1.36
16 FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions. Genome Biol 2009 1.32
17 Effects of cytosine methylation on transcription factor binding sites. BMC Genomics 2014 1.31
18 Novel small noncoding RNAs in mouse spermatozoa, zygotes and early embryos. PLoS One 2012 1.17
19 Construction of representative transcript and protein sets of human, mouse, and rat as a platform for their transcriptome and proteome analysis. Genomics 2004 1.13
20 Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation. Proc Natl Acad Sci U S A 2014 1.12
21 Transcription and enhancer profiling in human monocyte subsets. Blood 2014 1.12
22 Redefinition of the human mast cell transcriptome by deep-CAGE sequencing. Blood 2014 1.09
23 The enhancer and promoter landscape of human regulatory and conventional T-cell subpopulations. Blood 2014 1.08
24 Alternate transcription of the Toll-like receptor signaling cascade. Genome Biol 2006 1.08
25 Reduction of non-insert sequence reads by dimer eliminator LNA oligonucleotide for small RNA deep sequencing. Biotechniques 2010 1.07
26 The RIKEN integrated database of mammals. Nucleic Acids Res 2010 0.99
27 Nuclear pore complex protein mediated nuclear localization of dicer protein in human cells. PLoS One 2011 0.99
28 Automated workflow for preparation of cDNA for cap analysis of gene expression on a single molecule sequencer. PLoS One 2012 0.91
29 High-throughput transcription profiling identifies putative epigenetic regulators of hematopoiesis. Blood 2014 0.89
30 Specific mesothelial signature marks the heterogeneity of mesenchymal stem cells from high-grade serous ovarian cancer. Stem Cells 2014 0.80
31 Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines. BMC Genomics 2014 0.78
32 Correction: discovery of molecular markers to discriminate corneal endothelial cells in the human body. PLoS One 2015 0.75
33 Corrigendum: A draft network of ligand-receptor-mediated multicellular signalling in human. Nat Commun 2016 0.75