Published in Yeast on July 01, 2010
Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast. Mol Syst Biol (2011) 2.37
A complete set of nascent transcription rates for yeast genes. PLoS One (2010) 1.56
Protein expression regulation under oxidative stress. Mol Cell Proteomics (2011) 1.34
Accounting for experimental noise reveals that mRNA levels, amplified by post-transcriptional processes, largely determine steady-state protein levels in yeast. PLoS Genet (2015) 1.07
Constant growth rate can be supported by decreasing energy flux and increasing aerobic glycolysis. Cell Rep (2014) 0.98
The 3-base periodicity and codon usage of coding sequences are correlated with gene expression at the level of transcription elongation. PLoS One (2011) 0.91
Estimating a structured covariance matrix from multi-lab measurements in high-throughput biology. J Am Stat Assoc (2015) 0.78
The cellular growth rate controls overall mRNA turnover, and modulates either transcription or degradation rates of particular gene regulons. Nucleic Acids Res (2015) 0.78
RNA splicing and debranching viewed through analysis of RNA lariats. Mol Genet Genomics (2011) 0.78
Genomic insights into the different layers of gene regulation in yeast. Genet Res Int (2011) 0.76
Analysis of the association between codon optimality and mRNA stability in Schizosaccharomyces pombe. BMC Genomics (2016) 0.75
Growth rate controls mRNA turnover in steady and non-steady states. RNA Biol (2016) 0.75
Genomic run-on evaluates transcription rates for all yeast genes and identifies gene regulatory mechanisms. Mol Cell (2004) 2.99
Gene expression is circular: factors for mRNA degradation also foster mRNA synthesis. Cell (2013) 1.81
Specific and global regulation of mRNA stability during osmotic stress in Saccharomyces cerevisiae. RNA (2009) 1.66
A complete set of nascent transcription rates for yeast genes. PLoS One (2010) 1.56
The inner nuclear membrane protein Src1 associates with subtelomeric genes and alters their regulated gene expression. J Cell Biol (2008) 1.40
The Sas3p and Gcn5p histone acetyltransferases are recruited to similar genes. Genome Biol (2007) 1.31
Comprehensive transcriptional analysis of the oxidative response in yeast. J Biol Chem (2008) 1.25
Functional analysis of yeast gene families involved in metabolism of vitamins B1 and B6. Yeast (2002) 1.19
SRC1: an intron-containing yeast gene involved in sister chromatid segregation. Yeast (2002) 1.17
A method for genome-wide analysis of DNA helical tension by means of psoralen-DNA photobinding. Nucleic Acids Res (2010) 1.17
The transcriptional inhibitor thiolutin blocks mRNA degradation in yeast. Yeast (2008) 1.14
Saccharomyces cerevisiae glutaredoxin 5-deficient cells subjected to continuous oxidizing conditions are affected in the expression of specific sets of genes. J Biol Chem (2004) 1.13
The distribution of active RNA polymerase II along the transcribed region is gene-specific and controlled by elongation factors. Nucleic Acids Res (2010) 1.12
A new set of DNA macrochips for the yeast Saccharomyces cerevisiae: features and uses. Int Microbiol (2004) 1.10
Regulon-specific control of transcription elongation across the yeast genome. PLoS Genet (2009) 1.10
Heat shock response in yeast involves changes in both transcription rates and mRNA stabilities. PLoS One (2011) 1.07
Common gene expression strategies revealed by genome-wide analysis in yeast. Genome Biol (2007) 1.04
Chimeric genomes of natural hybrids of Saccharomyces cerevisiae and Saccharomyces kudriavzevii. Appl Environ Microbiol (2009) 0.98
Study of the first hours of microvinification by the use of osmotic stress-response genes as probes. Syst Appl Microbiol (2002) 0.89
A genomic study of the inter-ORF distances in Saccharomyces cerevisiae. Yeast (2006) 0.87
Nonsense-mediated mRNA decay controls the changes in yeast ribosomal protein pre-mRNAs levels upon osmotic stress. PLoS One (2013) 0.81
Structural characterization of chromosome I size variants from a natural yeast strain. Yeast (2003) 0.80
Arginase activity is a useful marker of nitrogen limitation during alcoholic fermentations. Syst Appl Microbiol (2003) 0.80
The conserved foot domain of RNA pol II associates with proteins involved in transcriptional initiation and/or early elongation. Genetics (2011) 0.79
External conditions inversely change the RNA polymerase II elongation rate and density in yeast. Biochim Biophys Acta (2013) 0.78
Topoisomerase II regulates yeast genes with singular chromatin architectures. Nucleic Acids Res (2013) 0.77
Yeast HAT1 and HAT2 deletions have different life-span and transcriptome phenotypes. FEBS Lett (2005) 0.77
Genomic-wide methods to evaluate transcription rates in yeast. Methods Mol Biol (2011) 0.76
The relative importance of transcription rate, cryptic transcription and mRNA stability on shaping stress responses in yeast. Transcription (2012) 0.75
mRNAStab--a web application for mRNA stability analysis. Bioinformatics (2013) 0.75
Global estimation of mRNA stability in yeast. Methods Mol Biol (2011) 0.75