Published in Appl Environ Microbiol on March 26, 2010
Metagenomic analysis and metabolite profiling of deep-sea sediments from the Gulf of Mexico following the Deepwater Horizon oil spill. Front Microbiol (2013) 1.34
The microbial nitrogen cycling potential is impacted by polyaromatic hydrocarbon pollution of marine sediments. Front Microbiol (2014) 1.01
Phylogenetic and functional diversity within toluene-degrading, sulphate-reducing consortia enriched from a contaminated aquifer. Microb Ecol (2014) 0.95
Enhanced gene detection assays for fumarate-adding enzymes allow uncovering of anaerobic hydrocarbon degraders in terrestrial and marine systems. Appl Environ Microbiol (2012) 0.95
The ecology of anaerobic degraders of BTEX hydrocarbons in aquifers. FEMS Microbiol Ecol (2016) 0.90
Identification of biomarker genes to predict biodegradation of 1,4-dioxane. Appl Environ Microbiol (2014) 0.76
Application of universal stress proteins in probing the dynamics of potent degraders in complex terephthalate metagenome. Biomed Res Int (2013) 0.75
Microbial communities mediating algal detritus turnover under anaerobic conditions. PeerJ (2017) 0.75
Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature (2005) 9.83
The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations. Appl Environ Microbiol (1997) 8.24
Microbial community gene expression in ocean surface waters. Proc Natl Acad Sci U S A (2008) 6.50
Capacity for denitrification and reduction of nitrate to ammonia in a coastal marine sediment. Appl Environ Microbiol (1978) 6.31
The microbial engines that drive Earth's biogeochemical cycles. Science (2008) 6.22
Denitrification: ecological niches, competition and survival. Antonie Van Leeuwenhoek (1982) 4.57
Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome. PLoS One (2008) 4.54
The ecology of arsenic. Science (2003) 3.85
A microbial consortium couples anaerobic methane oxidation to denitrification. Nature (2006) 3.84
Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities. PLoS One (2008) 3.83
The mcrA gene as an alternative to 16S rRNA in the phylogenetic analysis of methanogen populations in landfill. Microbiology (2002) 3.26
Role of metal-reducing bacteria in arsenic release from Bengal delta sediments. Nature (2004) 3.18
Revising the nitrogen cycle in the Peruvian oxygen minimum zone. Proc Natl Acad Sci U S A (2009) 3.11
Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre. Environ Microbiol (2009) 2.93
Linking crenarchaeal and bacterial nitrification to anammox in the Black Sea. Proc Natl Acad Sci U S A (2007) 2.82
Analysis of microbial gene transcripts in environmental samples. Appl Environ Microbiol (2005) 2.46
Microbial reefs in the Black Sea fueled by anaerobic oxidation of methane. Science (2002) 2.45
Detoxification of sulphidic African shelf waters by blooming chemolithotrophs. Nature (2008) 2.37
Enzymology and bioenergetics of respiratory nitrite ammonification. FEMS Microbiol Rev (2002) 1.91
Diversity of ammonia-oxidizing archaea and bacteria in the sediments of a hypernutrified subtropical estuary: Bahía del Tóbari, Mexico. Appl Environ Microbiol (2006) 1.87
Nitrate reduction to ammonia by enteric bacteria: redundancy, or a strategy for survival during oxygen starvation? FEMS Microbiol Lett (1996) 1.81
Discovery of a bacterium, with distinctive dioxygenase, that is responsible for in situ biodegradation in contaminated sediment. Proc Natl Acad Sci U S A (2003) 1.72
Anammox bacteria disguised as denitrifiers: nitrate reduction to dinitrogen gas via nitrite and ammonium. Environ Microbiol (2007) 1.65
Synergistic interactions in the microbial world. Antonie Van Leeuwenhoek (2002) 1.64
Real-time PCR quantification of rbcL (ribulose-1,5-bisphosphate carboxylase/oxygenase) mRNA in diatoms and pelagophytes. Appl Environ Microbiol (2002) 1.55
Soil eukaryotic functional diversity, a metatranscriptomic approach. ISME J (2007) 1.51
In situ, real-time catabolic gene expression: extraction and characterization of naphthalene dioxygenase mRNA transcripts from groundwater. Appl Environ Microbiol (1999) 1.45
Diversity and abundance of nitrate reductase genes (narG and napA), nitrite reductase genes (nirS and nrfA), and their transcripts in estuarine sediments. Appl Environ Microbiol (2007) 1.44
Diversity of 16S rDNA and naphthalene dioxygenase genes from coal-tar-waste-contaminated aquifer waters. Microb Ecol (2002) 1.39
Dissimilatory nitrate reduction in anaerobic sediments leading to river nitrite accumulation. Appl Environ Microbiol (1997) 1.36
A real-time polymerase chain reaction method for monitoring anaerobic, hydrocarbon-degrading bacteria based on a catabolic gene. Environ Sci Technol (2002) 1.35
Characterization of C1-metabolizing prokaryotic communities in methane seep habitats at the Kuroshima Knoll, southern Ryukyu Arc, by analyzing pmoA, mmoX, mxaF, mcrA, and 16S rRNA genes. Appl Environ Microbiol (2004) 1.34
Potential rates and pathways of microbial nitrate reduction in coastal sediments. FEMS Microbiol Ecol (2006) 1.18
Biogeochemical processes at the fringe of a landfill leachate pollution plume: potential for dissolved organic carbon, Fe(II), Mn(II), NH4, and CH4 oxidation. J Contam Hydrol (2004) 1.12
Isolation and analysis of mRNA from environmental microbial communities. J Microbiol Methods (2008) 1.10
Detection of anaerobic metabolites of saturated and aromatic hydrocarbons in petroleum-contaminated aquifers. Environ Sci Technol (2002) 1.08
Poly(A) polymerase modification and reverse transcriptase PCR amplification of environmental RNA. Appl Environ Microbiol (2005) 1.07
Detection of anaerobic toluene and hydrocarbon degraders in contaminated aquifers using benzylsuccinate synthase (bssA) genes as a functional marker. Environ Microbiol (2007) 1.07
Kinetic modeling of microbially-driven redox chemistry of radionuclides in subsurface environments: coupling transport, microbial metabolism and geochemistry. J Contam Hydrol (2001) 1.02
Combined application of stable carbon isotope analysis and specific metabolites determination for assessing in situ degradation of aromatic hydrocarbons in a tar oil-contaminated aquifer. Environ Sci Technol (2004) 0.98
Subsurface ecosystem resilience: long-term attenuation of subsurface contaminants supports a dynamic microbial community. ISME J (2009) 0.97
Further biogeochemical characterization of a trichloroethene-contaminated fractured dolomite aquifer: electron source and microbial communities involved in reductive dechlorination. Environ Sci Technol (2001) 0.94
Diversity, abundance, and consistency of microbial oxygenase expression and biodegradation in a shallow contaminated aquifer. Appl Environ Microbiol (2009) 0.93
Spatial and temporal changes in microbial community structure associated with recharge-influenced chemical gradients in a contaminated aquifer. Environ Microbiol (2004) 0.92
Geochemical and physiological evidence for mixed aerobic and anaerobic field biodegradation of coal tar waste by subsurface microbial communities. Microb Ecol (2002) 0.91
Gene transcript analysis of assimilatory iron limitation in Geobacteraceae during groundwater bioremediation. Environ Microbiol (2008) 0.90
Detection in coal tar waste-contaminated groundwater of mRNA transcripts related to naphthalene dioxygenase by fluorescent in situ hybridization with tyramide signal amplification. J Microbiol Methods (2002) 0.89
Field-based and laboratory stable isotope probing surveys of the identities of both aerobic and anaerobic benzene-metabolizing microorganisms in freshwater sediment. Environ Microbiol (2008) 0.89
Evaluating behavior of oxygen, nitrate, and sulfate during recharge and quantifying reduction rates in a contaminated aquifer. Environ Sci Technol (2002) 0.88
Dynamics of an oligotrophic bacterial aquifer community during contact with a groundwater plume contaminated with benzene, toluene, ethylbenzene, and xylenes: an in situ mesocosm study. Appl Environ Microbiol (2005) 0.84
Biodegradation in contaminated aquifers: incorporating microbial/molecular methods. Ground Water (2008) 0.82
Challenges in monitoring the natural attenuation of spatially variable plumes. Biodegradation (2004) 0.81
Metabolic biomarkers for monitoring in situ anaerobic hydrocarbon degradation. Environ Health Perspect (2005) 0.81
Enhanced biodegradation by hydraulic heterogeneities in petroleum hydrocarbon plumes. J Contam Hydrol (2008) 0.79
Elucidation of nitrate reduction pathways in anaerobic bioreactors using a stable isotope approach. Rapid Commun Mass Spectrom (2008) 0.76
Potential nitrate removal in a coastal freshwater sediment (Haringvliet Lake, The Netherlands) and response to salinization. Water Res (2007) 0.76
Metagenomic analysis of kimchi, a traditional Korean fermented food. Appl Environ Microbiol (2011) 2.08
In-situ evidence for uranium immobilization and remobilization. Environ Sci Technol (2002) 1.56
Metagenomics of hydrocarbon resource environments indicates aerobic taxa and genes to be unexpectedly common. Environ Sci Technol (2013) 1.45
Enrichment and characterization of an autotrophic ammonia-oxidizing archaeon of mesophilic crenarchaeal group I.1a from an agricultural soil. Appl Environ Microbiol (2011) 1.41
Metagenomic analysis and metabolite profiling of deep-sea sediments from the Gulf of Mexico following the Deepwater Horizon oil spill. Front Microbiol (2013) 1.34
Bioenergy production via microbial conversion of residual oil to natural gas. Appl Environ Microbiol (2008) 1.31
Use of field-based stable isotope probing to identify adapted populations and track carbon flow through a phenol-degrading soil microbial community. Appl Environ Microbiol (2005) 1.30
Comparative studies on the diversity of the edible mushroom Pleurotus eryngii: ITS sequence analysis, RAPD fingerprinting, and physiological characteristics. Mycol Res (2007) 1.28
The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar-contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer. Environ Microbiol (2009) 1.22
Field and laboratory studies on the bioconversion of coal to methane in the San Juan Basin. FEMS Microbiol Ecol (2012) 1.22
Polaromonas naphthalenivorans sp. nov., a naphthalene-degrading bacterium from naphthalene-contaminated sediment. Int J Syst Evol Microbiol (2004) 1.21
Methanogenesis, sulfate reduction and crude oil biodegradation in hot Alaskan oilfields. Environ Microbiol (2010) 1.19
Cultivation of a highly enriched ammonia-oxidizing archaeon of thaumarchaeotal group I.1b from an agricultural soil. Environ Microbiol (2012) 1.18
Biocorrosive thermophilic microbial communities in Alaskan North Slope oil facilities. Environ Sci Technol (2009) 1.18
Carbon and sulfur cycling by microbial communities in a gypsum-treated oil sands tailings pond. Environ Sci Technol (2010) 1.18
The naphthalene catabolic (nag) genes of Polaromonas naphthalenivorans CJ2: evolutionary implications for two gene clusters and novel regulatory control. Appl Environ Microbiol (2006) 1.11
Influence of soil components on the biodegradation of benzene, toluene, ethylbenzene, and o-, m-, and p-xylenes by the newly isolated bacterium Pseudoxanthomonas spadix BD-a59. Appl Environ Microbiol (2008) 1.09
Detection of anaerobic metabolites of saturated and aromatic hydrocarbons in petroleum-contaminated aquifers. Environ Sci Technol (2002) 1.08
Anaerobic oxidation of crude oil hydrocarbons by the resident microorganisms of a contaminated anoxic aquifer. Environ Sci Technol (2003) 1.08
Diversity of benzyl- and alkylsuccinate synthase genes in hydrocarbon-impacted environments and enrichment cultures. Environ Sci Technol (2010) 1.06
Biodegradation of low-molecular-weight alkanes under mesophilic, sulfate-reducing conditions: metabolic intermediates and community patterns. FEMS Microbiol Ecol (2010) 1.04
Comparison of mechanisms of alkane metabolism under sulfate-reducing conditions among two bacterial isolates and a bacterial consortium. Appl Environ Microbiol (2006) 1.03
Desulfoglaeba alkanexedens gen. nov., sp. nov., an n-alkane-degrading, sulfate-reducing bacterium. Int J Syst Evol Microbiol (2006) 1.03
Comparative survey of rumen microbial communities and metabolites across one caprine and three bovine groups, using bar-coded pyrosequencing and ¹H nuclear magnetic resonance spectroscopy. Appl Environ Microbiol (2012) 1.01
Microbial communities in bulk fluids and biofilms of an oil facility have similar composition but different structure. Environ Microbiol (2011) 1.01
Biodegradation of an alicyclic hydrocarbon by a sulfate-reducing enrichment from a gas condensate-contaminated aquifer. Appl Environ Microbiol (2003) 0.99
Subsurface ecosystem resilience: long-term attenuation of subsurface contaminants supports a dynamic microbial community. ISME J (2009) 0.97
Field metabolomics and laboratory assessments of anaerobic intrinsic bioremediation of hydrocarbons at a petroleum-contaminated site. Microb Biotechnol (2009) 0.97
Metatranscriptomic analysis of lactic acid bacterial gene expression during kimchi fermentation. Int J Food Microbiol (2013) 0.96
nahR, encoding a LysR-type transcriptional regulator, is highly conserved among naphthalene-degrading bacteria isolated from a coal tar waste-contaminated site and in extracted community DNA. Microbiology (2002) 0.96
Toluene depletion in produced oil contributes to souring control in a field subjected to nitrate injection. Environ Sci Technol (2012) 0.96
Microbial community dynamics and stability during an ammonia-induced shift to syntrophic acetate oxidation. Appl Environ Microbiol (2014) 0.95
Naphthalene metabolism and growth inhibition by naphthalene in Polaromonas naphthalenivorans strain CJ2. Microbiology (2007) 0.94
Methane emission and dynamics of methanotrophic and methanogenic communities in a flooded rice field ecosystem. FEMS Microbiol Ecol (2014) 0.94
Ferredoxin-NADP+ reductase from Pseudomonas putida functions as a ferric reductase. J Bacteriol (2008) 0.93
Comparative genomic analysis of Acinetobacter oleivorans DR1 to determine strain-specific genomic regions and gentisate biodegradation. Appl Environ Microbiol (2011) 0.93
Horizontal transfer of phnAc dioxygenase genes within one of two phenotypically and genotypically distinctive naphthalene-degrading guilds from adjacent soil environments. Appl Environ Microbiol (2003) 0.93
Diversity, abundance, and consistency of microbial oxygenase expression and biodegradation in a shallow contaminated aquifer. Appl Environ Microbiol (2009) 0.93
Periplasmic cytochrome c3 of Desulfovibrio vulgaris is directly involved in H2-mediated metal but not sulfate reduction. Appl Environ Microbiol (2004) 0.92
Stable isotopic studies of n-alkane metabolism by a sulfate-reducing bacterial enrichment culture. Appl Environ Microbiol (2005) 0.91
Comparative genomics reveals adaptation by Alteromonas sp. SN2 to marine tidal-flat conditions: cold tolerance and aromatic hydrocarbon metabolism. PLoS One (2012) 0.91
Methanogenic biodegradation of two-ringed polycyclic aromatic hydrocarbons. FEMS Microbiol Ecol (2012) 0.91
In situ detection of anaerobic alkane metabolites in subsurface environments. Front Microbiol (2013) 0.90
Detection in coal tar waste-contaminated groundwater of mRNA transcripts related to naphthalene dioxygenase by fluorescent in situ hybridization with tyramide signal amplification. J Microbiol Methods (2002) 0.89
Anaerobic phenanthrene mineralization by a carboxylating sulfate-reducing bacterial enrichment. ISME J (2007) 0.89
Alteromonas as a key agent of polycyclic aromatic hydrocarbon biodegradation in crude oil-contaminated coastal sediment. Environ Sci Technol (2012) 0.89
In situ microbial metabolism of aromatic-hydrocarbon environmental pollutants. Curr Opin Biotechnol (2012) 0.89
Identification of toluene degraders in a methanogenic enrichment culture. FEMS Microbiol Ecol (2014) 0.88
Evaluation of microbial biofilm communities from an Alberta oil sands tailings pond. FEMS Microbiol Ecol (2012) 0.88
Methanogenic toluene metabolism: community structure and intermediates. Environ Microbiol (2011) 0.87
Assessing in situ rates of anaerobic hydrocarbon bioremediation. Microb Biotechnol (2009) 0.87
Anaerobic biodegradation of alicyclic constituents of gasoline and natural gas condensate by bacteria from an anoxic aquifer. FEMS Microbiol Ecol (2004) 0.87
Progress curve analysis for enzyme and microbial kinetic reactions using explicit solutions based on the Lambert W function. J Microbiol Methods (2004) 0.86
Expression analysis of the fpr (ferredoxin-NADP+ reductase) gene in Pseudomonas putida KT2440. Biochem Biophys Res Commun (2006) 0.86
Interaction of NahR, a LysR-type transcriptional regulator, with the alpha subunit of RNA polymerase in the naphthalene degrading bacterium, Pseudomonas putida NCIB 9816-4. FEMS Microbiol Lett (2002) 0.86
Overexpressing antioxidant enzymes enhances naphthalene biodegradation in Pseudomonas sp. strain As1. Microbiology (2007) 0.85
Involvement of thermophilic archaea in the biocorrosion of oil pipelines. Environ Microbiol (2012) 0.85
GeoChip-based analysis of microbial functional gene diversity in a landfill leachate-contaminated aquifer. Environ Sci Technol (2012) 0.85
Analysis of methanogenic archaeal communities of rumen fluid and rumen particles from Korean black goats. Anim Sci J (2011) 0.85
Sources of sulfate supporting anaerobic metabolism in a contaminated aquifer. Environ Sci Technol (2003) 0.85
Comparative genomic analysis and benzene, toluene, ethylbenzene, and o-, m-, and p-xylene (BTEX) degradation pathways of Pseudoxanthomonas spadix BD-a59. Appl Environ Microbiol (2012) 0.85
Field-based stable isotope probing reveals the identities of benzoic acid-metabolizing microorganisms and their in situ growth in agricultural soil. Appl Environ Microbiol (2008) 0.84
Dynamic secondary ion mass spectrometry imaging of microbial populations utilizing C-labelled substrates in pure culture and in soil. Environ Microbiol (2008) 0.84
Microbial community and potential functional gene diversity involved in anaerobic hydrocarbon degradation and methanogenesis in an oil sands tailings pond. Genome (2013) 0.83
Identification and characterization of microbial biofilm communities associated with corroded oil pipeline surfaces. Biofouling (2014) 0.83
Geochemistry and microbial diversity of a trichloroethene-contaminated Superfund site undergoing intrinsic in situ reductive dechlorination. FEMS Microbiol Ecol (2002) 0.83
In vitro and in vivo interactions of ferredoxin-NADP+ reductases in Pseudomonas putida. J Biochem (2009) 0.82
Metaproteomic survey of six aquatic habitats: discovering the identities of microbial populations active in biogeochemical cycling. Microb Ecol (2014) 0.82
Impact of organosulfur content on diesel fuel stability and implications for carbon steel corrosion. Environ Sci Technol (2013) 0.81
Microbial interactions during residual oil and n-fatty acid metabolism by a methanogenic consortium. Environ Microbiol Rep (2012) 0.81
Identification and characterization of the conjugal transfer region of the pCg1 plasmid from naphthalene-degrading Pseudomonas putida Cg1. Appl Environ Microbiol (2003) 0.80
Changes in organic matter biodegradability influencing sulfate reduction in an aquifer contaminated by landfill leachate. Microb Ecol (2006) 0.79
Molecular and biochemical characterization of 3-hydroxybenzoate 6-hydroxylase from Polaromonas naphthalenivorans CJ2. Appl Environ Microbiol (2007) 0.79
Enrichment and isolation of anaerobic hydrocarbon-degrading bacteria. Methods Enzymol (2005) 0.79
Stable isotope probing reveals Trichosporon yeast to be active in situ in soil phenol metabolism. ISME J (2008) 0.79
Identification of metabolites involved in the biodegradation of the ionic liquid 1-butyl-3-methylpyridinium bromide by activated sludge microorganisms. Environ Sci Technol (2009) 0.79
Gentisate 1,2-dioxygenase, in the third naphthalene catabolic gene cluster of Polaromonas naphthalenivorans CJ2, has a role in naphthalene degradation. Microbiology (2011) 0.79
Anaerobic biodegradation of natural gas condensate can be stimulated by the addition of gasoline. Biodegradation (2006) 0.78
Determination of alkylbenzene metabolites in groundwater by solid-phase extraction and liquid chromatography-tandem mass spectrometry. J Chromatogr A (2004) 0.78
The effect of oil sands process-affected water and naphthenic acids on the germination and development of Arabidopsis. Chemosphere (2013) 0.78
An uncultivated nitrate-reducing member of the genus Herminiimonas degrades toluene. Appl Environ Microbiol (2014) 0.77
Sulphide production and corrosion in seawaters during exposure to FAME diesel. Biofouling (2012) 0.77
In situ hydrogen consumption kinetics as an indicator of subsurface microbial activity. FEMS Microbiol Ecol (2007) 0.76
In situ expression of nitrite-dependent anaerobic methane oxidation proteins by Candidatus Methylomirabilis oxyfera co-occurring with expressed anammox proteins in a contaminated aquifer. Environ Microbiol Rep (2015) 0.76
Naphthenic acid biodegradation by the unicellular alga Dunaliella tertiolecta. Chemosphere (2011) 0.76
Fine-scale population structure of Accumulibacter phosphatis in enhanced biological phosphorus removal sludge. J Microbiol Biotechnol (2008) 0.76
Polarizability and spin density correlate with the relative anaerobic biodegradability of alkylaromatic hydrocarbons. Environ Sci Technol (2009) 0.75
Impact of Photooxidation and Biodegradation on the Fate of Oil Spilled During the Deepwater Horizon Incident: Advanced Stages of Weathering. Environ Sci Technol (2017) 0.75