Published in Genome Res on March 31, 2010
An initial comparative map of copy number variations in the goat (Capra hircus) genome. BMC Genomics (2010) 1.18
A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution. Mol Ecol (2014) 1.11
Origin of amphibian and avian chromosomes by fission, fusion, and retention of ancestral chromosomes. Genome Res (2011) 1.10
Support for multiple classes of local expression clusters in Drosophila melanogaster, but no evidence for gene order conservation. Genome Biol (2011) 1.07
Intrachromosomal rearrangements in avian genome evolution: evidence for regions prone to breakpoints. Heredity (Edinb) (2011) 1.07
Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array. BMC Genomics (2012) 1.04
Characterising chromosome rearrangements: recent technical advances in molecular cytogenetics. Heredity (Edinb) (2011) 1.02
Evidence of a neo-sex chromosome in birds. Heredity (Edinb) (2011) 0.98
Genome analyses substantiate male mutation bias in many species. Bioessays (2011) 0.97
A SNP based linkage map of the turkey genome reveals multiple intrachromosomal rearrangements between the turkey and chicken genomes. BMC Genomics (2010) 0.94
Copy number variants in locally raised Chinese chicken genomes determined using array comparative genomic hybridization. BMC Genomics (2013) 0.93
Copy number variation in the cattle genome. Funct Integr Genomics (2012) 0.92
Molecular cytogenetic characterization of multiple intrachromosomal rearrangements in two representatives of the genus Turdus (Turdidae, Passeriformes). PLoS One (2014) 0.89
Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor. BMC Genomics (2014) 0.88
Gene duplication of endothelin 3 is closely correlated with the hyperpigmentation of the internal organs (Fibromelanosis) in silky chickens. Genetics (2011) 0.86
Large scale variation in DNA copy number in chicken breeds. BMC Genomics (2013) 0.86
Intrachromosomal rearrangements in two representatives of the genus Saltator (Thraupidae, Passeriformes) and the occurrence of heteromorphic Z chromosomes. Genetica (2015) 0.84
Novel tools for characterising inter and intra chromosomal rearrangements in avian microchromosomes. Chromosome Res (2014) 0.84
Genome-wide association mapping and identification of candidate genes for the rumpless and ear-tufted traits of the Araucana chicken. PLoS One (2012) 0.82
Sex chromosomes and karyotype of the (nearly) mythical creature, the Gila monster, Heloderma suspectum (Squamata: Helodermatidae). PLoS One (2014) 0.82
Novel X-linked genes revealed by quantitative polymerase chain reaction in the green anole, Anolis carolinensis. G3 (Bethesda) (2014) 0.82
Identification and functional characterization of copy number variations in diverse chicken breeds. BMC Genomics (2014) 0.81
Brain transcriptome of the violet-eared waxbill Uraeginthus granatina and recent evolution in the songbird genome. Open Biol (2013) 0.81
The singing genome. Heredity (Edinb) (2010) 0.80
Indels, structural variation, and recombination drive genomic diversity in Plasmodium falciparum. Genome Res (2016) 0.80
All chromosomes great and small: 10 years on. Chromosome Res (2014) 0.80
Interstitial Telomeric Motifs in Squamate Reptiles: When the Exceptions Outnumber the Rule. PLoS One (2015) 0.79
Comparative genomics reveals molecular features unique to the songbird lineage. BMC Genomics (2014) 0.79
A duck RH panel and its potential for assisting NGS genome assembly. BMC Genomics (2012) 0.79
Comparative Analysis of CNV Calling Algorithms: Literature Survey and a Case Study Using Bovine High-Density SNP Data. Microarrays (Basel) (2013) 0.79
Comparative cytogenomics of poultry: mapping of single gene and repeat loci in the Japanese quail (Coturnix japonica). Chromosome Res (2014) 0.78
Novel Insights into Chromosome Evolution in Birds, Archosaurs, and Reptiles. Genome Biol Evol (2016) 0.78
Tracing the evolution of amniote chromosomes. Chromosoma (2014) 0.78
Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools. BMC Genomics (2016) 0.78
Copy Number Variation in Chickens: A Review and Future Prospects. Microarrays (Basel) (2014) 0.77
A genome-wide detection of copy number variation using SNP genotyping arrays in Beijing-You chickens. Genetica (2014) 0.76
Centromere positions in chicken and Japanese quail chromosomes: de novo centromere formation versus pericentric inversions. Chromosome Res (2012) 0.76
Global patterns of apparent copy number variation in birds revealed by cross-species comparative genomic hybridization. Chromosome Res (2014) 0.76
Dosage sensitivity is a major determinant of human copy number variant pathogenicity. Nat Commun (2017) 0.75
Mapping centromeres of microchromosomes in the zebra finch (Taeniopygia guttata) using half-tetrad analysis. Chromosoma (2015) 0.75
Genome-wide copy number variation (CNV) detection in Nelore cattle reveals highly frequent variants in genome regions harboring QTLs affecting production traits. BMC Genomics (2016) 0.75
Covariation in levels of nucleotide diversity in homologous regions of the avian genome long after completion of lineage sorting. Proc Biol Sci (2017) 0.75
Marsupials as models for understanding the role of chromosome rearrangements in evolution and disease. Chromosoma (2016) 0.75
Finding the missing heritability of complex diseases. Nature (2009) 67.95
Global variation in copy number in the human genome. Nature (2006) 57.50
A fine-scale map of recombination rates and hotspots across the human genome. Science (2005) 26.82
Ensembl 2009. Nucleic Acids Res (2008) 25.38
Circular binary segmentation for the analysis of array-based DNA copy number data. Biostatistics (2004) 24.18
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature (2004) 21.40
The fine-scale structure of recombination rate variation in the human genome. Science (2004) 17.05
Segmental duplications and copy-number variation in the human genome. Am J Hum Genet (2005) 13.33
Genome architecture, rearrangements and genomic disorders. Trends Genet (2002) 12.26
High-resolution mapping of human chromosome 11 by in situ hybridization with cosmid clones. Science (1990) 10.72
Mechanisms of change in gene copy number. Nat Rev Genet (2009) 9.01
A common sequence motif associated with recombination hot spots and genome instability in humans. Nat Genet (2008) 8.64
Diet and the evolution of human amylase gene copy number variation. Nat Genet (2007) 8.64
Copy number variation in human health, disease, and evolution. Annu Rev Genomics Hum Genet (2009) 7.64
Genomic disorders: molecular mechanisms for rearrangements and conveyed phenotypes. PLoS Genet (2005) 7.60
A new non-linear normalization method for reducing variability in DNA microarray experiments. Genome Biol (2002) 7.12
Chromosomal rearrangements and speciation. Trends Ecol Evol (2001) 6.07
The genome of a songbird. Nature (2010) 5.90
A genome-wide comparison of recent chimpanzee and human segmental duplications. Nature (2005) 5.51
Primate segmental duplications: crucibles of evolution, diversity and disease. Nat Rev Genet (2006) 5.25
Fine-scale recombination patterns differ between chimpanzees and humans. Nat Genet (2005) 5.00
Chromosomal inversions and the reproductive isolation of species. Proc Natl Acad Sci U S A (2001) 4.75
A high-resolution single nucleotide polymorphism genetic map of the mouse genome. PLoS Biol (2006) 4.57
Mechanisms for human genomic rearrangements. Pathogenetics (2008) 4.54
Implications of human genome architecture for rearrangement-based disorders: the genomic basis of disease. Hum Mol Genet (2004) 4.47
Structural variation of the human genome. Annu Rev Genomics Hum Genet (2006) 4.25
Mouse segmental duplication and copy number variation. Nat Genet (2008) 4.24
Hotspots for copy number variation in chimpanzees and humans. Proc Natl Acad Sci U S A (2006) 3.68
A burst of segmental duplications in the genome of the African great ape ancestor. Nature (2009) 3.63
The dynamics of chromosome evolution in birds and mammals. Nature (1999) 2.95
A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate. Genome Res (2008) 2.70
Copy number variation and evolution in humans and chimpanzees. Genome Res (2008) 2.69
Engineering evolution to study speciation in yeasts. Nature (2003) 2.61
Revisiting the Impact of Inversions in Evolution: From Population Genetic Markers to Drivers of Adaptive Shifts and Speciation? Annu Rev Ecol Evol Syst (2008) 2.50
The genomic architecture of segmental duplications and associated copy number variants in dogs. Genome Res (2009) 2.44
Large-scale variation among human and great ape genomes determined by array comparative genomic hybridization. Genome Res (2003) 2.41
Analysis of copy number variants and segmental duplications in the human genome: Evidence for a change in the process of formation in recent evolutionary history. Genome Res (2008) 2.17
Replication stress induces genome-wide copy number changes in human cells that resemble polymorphic and pathogenic variants. Am J Hum Genet (2009) 2.07
Adaptive copy number evolution in malaria parasites. PLoS Genet (2008) 2.04
The functional impact of structural variation in humans. Trends Genet (2008) 2.03
Gene copy number variation spanning 60 million years of human and primate evolution. Genome Res (2007) 2.02
Genomic copy number variation, human health, and disease. Lancet (2009) 1.99
Mammalian karyotype evolution. Nat Rev Genet (2007) 1.97
The evolution of the avian genome as revealed by comparative molecular cytogenetics. Cytogenet Genome Res (2007) 1.94
Chromosome evolution in eukaryotes: a multi-kingdom perspective. Trends Genet (2005) 1.93
A chromosomal rearrangement hotspot can be identified from population genetic variation and is coincident with a hotspot for allelic recombination. Am J Hum Genet (2006) 1.86
A linkage map of the zebra finch Taeniopygia guttata provides new insights into avian genome evolution. Genetics (2008) 1.85
GenAlyzer: interactive visualization of sequence similarities between entire genomes. Bioinformatics (2004) 1.85
The recombination landscape of the zebra finch Taeniopygia guttata genome. Genome Res (2010) 1.72
Origin and evolution of avian microchromosomes. Cytogenet Genome Res (2002) 1.72
Whole genome comparative studies between chicken and turkey and their implications for avian genome evolution. BMC Genomics (2008) 1.59
Chromosomal polymorphism and comparative painting analysis in the zebra finch. Chromosome Res (2005) 1.53
Complex patterns of copy number variation at sites of segmental duplications: an important category of structural variation in the human genome. Hum Genet (2006) 1.33
Two-dimensional screening of the Wageningen chicken BAC library. Mamm Genome (2000) 1.31
Identification of a 3.0-kb major recombination hotspot in patients with Sotos syndrome who carry a common 1.9-Mb microdeletion. Am J Hum Genet (2004) 1.27
Comparative genomics in chicken and Pekin duck using FISH mapping and microarray analysis. BMC Genomics (2009) 1.18
A first-generation microsatellite-based genetic linkage map of the Siberian jay (Perisoreus infaustus): insights into avian genome evolution. BMC Genomics (2009) 1.03
SyntenyTracker: a tool for defining homologous synteny blocks using radiation hybrid maps and whole-genome sequence. BMC Res Notes (2009) 0.91
A comparison of synteny and gene order on the homologue of chicken chromosome 7 between two passerine species and between passerines and chicken. Cytogenet Genome Res (2008) 0.87
A highly conserved segmental duplication in the subtelomeres of Plasmodium falciparum chromosomes varies in copy number. Malar J (2008) 0.87
The genome of a songbird. Nature (2010) 5.90
Analyses of pig genomes provide insight into porcine demography and evolution. Nature (2012) 5.58
A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms. Nature (2004) 5.24
Rescue of a severely bottlenecked wolf (Canis lupus) population by a single immigrant. Proc Biol Sci (2003) 2.76
The genomic landscape of species divergence in Ficedula flycatchers. Nature (2012) 2.35
Genes of domestic mammals augmented by backcrossing with wild ancestors. Trends Genet (2005) 2.04
Male-biased mutation rate and divergence in autosomal, z-linked and w-linked introns of chicken and Turkey. Mol Biol Evol (2004) 2.01
Cattle domestication in the Near East was followed by hybridization with aurochs bulls in Europe. Proc Biol Sci (2005) 2.01
Evolutionary strata on the chicken Z chromosome: implications for sex chromosome evolution. Genetics (2004) 1.80
Prehistoric contacts over the Straits of Gibraltar indicated by genetic analysis of Iberian Bronze Age cattle. Proc Natl Acad Sci U S A (2005) 1.74
Comparison of the chicken and turkey genomes reveals a higher rate of nucleotide divergence on microchromosomes than macrochromosomes. Genome Res (2004) 1.73
The recombination landscape of the zebra finch Taeniopygia guttata genome. Genome Res (2010) 1.72
Limited number of patrilines in horse domestication. Nat Genet (2004) 1.70
Karyomapping: a universal method for genome wide analysis of genetic disease based on mapping crossovers between parental haplotypes. J Med Genet (2009) 1.68
Deterministic mutation rate variation in the human genome. Genome Res (2002) 1.63
Microsatellite evolution inferred from human-chimpanzee genomic sequence alignments. Proc Natl Acad Sci U S A (2002) 1.59
From wild wolf to domestic dog: gene expression changes in the brain. Brain Res Mol Brain Res (2004) 1.59
Pleiotropic constraint hampers the resolution of sexual antagonism in vertebrate gene expression. Am Nat (2008) 1.51
Strong regional biases in nucleotide substitution in the chicken genome. Mol Biol Evol (2006) 1.50
The evolutionary causes and consequences of sex-biased gene expression. Nat Rev Genet (2013) 1.50
Fast-X on the Z: rapid evolution of sex-linked genes in birds. Genome Res (2007) 1.49
Ecological and genetic spatial structuring in the Canadian lynx. Nature (2003) 1.49
Evidence for turnover of functional noncoding DNA in mammalian genome evolution. Genomics (2004) 1.45
Male-driven biased gene conversion governs the evolution of base composition in human alu repeats. Mol Biol Evol (2005) 1.44
Periconceptional maternal micronutrient supplementation is associated with widespread gender related changes in the epigenome: a study of a unique resource in the Gambia. Hum Mol Genet (2012) 1.44
Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species. Mol Ecol (2010) 1.44
Insertion-deletion polymorphisms (indels) as genetic markers in natural populations. BMC Genet (2008) 1.43
Computer simulations improve university instructional laboratories. Cell Biol Educ (2004) 1.42
Genetic mapping in a natural population of collared flycatchers (Ficedula albicollis): conserved synteny but gene order rearrangements on the avian Z chromosome. Genetics (2006) 1.41
Evolution of the chicken Toll-like receptor gene family: a story of gene gain and gene loss. BMC Genomics (2008) 1.41
Reduced variation on the chicken Z chromosome. Genetics (2004) 1.39
To what extent do microsatellite markers reflect genome-wide genetic diversity in natural populations? Mol Ecol (2008) 1.37
Genomics of natural bird populations: a gene-based set of reference markers evenly spread across the avian genome. Mol Ecol (2007) 1.36
Gene duplication and fragmentation in the zebra finch major histocompatibility complex. BMC Biol (2010) 1.34
The chicken (Gallus gallus) Z chromosome contains at least three nonlinear evolutionary strata. Genetics (2008) 1.33
Low levels of nucleotide diversity in mammalian Y chromosomes. Mol Biol Evol (2003) 1.33
Heterozygosity-fitness correlations in zebra finches: microsatellite markers can be better than their reputation. Mol Ecol (2012) 1.33
Compositional evolution of noncoding DNA in the human and chimpanzee genomes. Mol Biol Evol (2003) 1.32
Next generation molecular ecology. Mol Ecol (2010) 1.30
Diminished effect of maternal age on implantation after preimplantation genetic diagnosis with array comparative genomic hybridization. Fertil Steril (2013) 1.29
Speciation genetics: current status and evolving approaches. Philos Trans R Soc Lond B Biol Sci (2010) 1.28
A gene-based genetic linkage map of the collared flycatcher (Ficedula albicollis) reveals extensive synteny and gene-order conservation during 100 million years of avian evolution. Genetics (2008) 1.28
Genome-wide analysis of microsatellite polymorphism in chicken circumventing the ascertainment bias. Genome Res (2008) 1.27
Chicken W: a genetically uniform chromosome in a highly variable genome. Proc Natl Acad Sci U S A (2004) 1.26
Bottlenecked but long-lived: high genetic diversity retained in white-tailed eagles upon recovery from population decline. Biol Lett (2006) 1.24
Sex-linkage of sexually antagonistic genes is predicted by female, but not male, effects in birds. Evolution (2009) 1.22
The unique genomic properties of sex-biased genes: insights from avian microarray data. BMC Genomics (2008) 1.22
Heterogeneity in the rate and pattern of germline mutation at individual microsatellite loci. Nucleic Acids Res (2002) 1.22
The molecular basis of chromosome orthologies and sex chromosomal differentiation in palaeognathous birds. Chromosome Res (2007) 1.20
Faster-Z evolution is predominantly due to genetic drift. Mol Biol Evol (2009) 1.20
Recombination drives vertebrate genome contraction. PLoS Genet (2012) 1.20
Comparative genomics in chicken and Pekin duck using FISH mapping and microarray analysis. BMC Genomics (2009) 1.18
Molecular cytogenetic definition of the chicken genome: the first complete avian karyotype. Genetics (2004) 1.17
The genetic basis of infertility. Reproduction (2003) 1.17
Dynamic evolution of base composition: causes and consequences in avian phylogenomics. Mol Biol Evol (2011) 1.17
Ontogenetic complexity of sexual dimorphism and sex-specific selection. Mol Biol Evol (2010) 1.16
Nonlinear dynamics of nonsynonymous (dN) and synonymous (dS) substitution rates affects inference of selection. Genome Biol Evol (2009) 1.15
Levels of linkage disequilibrium in a wild bird population. Biol Lett (2006) 1.15
Life history and the male mutation bias. Evolution (2003) 1.14
Speciation in Ficedula flycatchers. Philos Trans R Soc Lond B Biol Sci (2010) 1.14
The genomic landscape of short insertion and deletion polymorphisms in the chicken (Gallus gallus) Genome: a high frequency of deletions in tandem duplicates. Genetics (2007) 1.13
Fast accumulation of nonsynonymous mutations on the female-specific W chromosome in birds. J Mol Evol (2005) 1.12
Molecular evolution of genes in avian genomes. Genome Biol (2010) 1.12
A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution. Mol Ecol (2014) 1.11
Y chromosome conserved anchored tagged sequences (YCATS) for the analysis of mammalian male-specific DNA. Mol Ecol (2003) 1.11
Characterization of chromosome structures of Falconinae (Falconidae, Falconiformes, Aves) by chromosome painting and delineation of chromosome rearrangements during their differentiation. Chromosome Res (2008) 1.10
Nonrandom distribution of genes with sex-biased expression in the chicken genome. Evolution (2006) 1.09
Gene expression, synteny, and local similarity in human noncoding mutation rates. Mol Biol Evol (2004) 1.09
Gene conversion drives the evolution of HINTW, an ampliconic gene on the female-specific avian W chromosome. Mol Biol Evol (2005) 1.08
Insertion events of CR1 retrotransposable elements elucidate the phylogenetic branching order in galliform birds. Mol Biol Evol (2006) 1.07
Non-random chromosome positioning in mammalian sperm nuclei, with migration of the sex chromosomes during late spermatogenesis. J Cell Sci (2005) 1.07
Are sex-biased genes more dispensable? Biol Lett (2009) 1.07
Demographic divergence history of pied flycatcher and collared flycatcher inferred from whole-genome re-sequencing data. PLoS Genet (2013) 1.03
Natural selection in avian protein-coding genes expressed in brain. Mol Ecol (2008) 1.03
Substitution rate variation at human CpG sites correlates with non-CpG divergence, methylation level and GC content. Genome Biol (2011) 1.01
MHC class II genes in European wolves: a comparison with dogs. Immunogenetics (2002) 1.01
A mapping and evolutionary study of porcine sex chromosome genes. Mamm Genome (2002) 1.00
Rapid evolution of female-biased, but not male-biased, genes expressed in the avian brain. Mol Biol Evol (2007) 1.00
Out of Florida: mtDNA reveals patterns of migration and Pleistocene range expansion of the Green Anole lizard (Anolis carolinensis). Ecol Evol (2012) 1.00
Parallel divergence and degradation of the avian W sex chromosome. Trends Ecol Evol (2007) 0.97
Twisted signatures of GC-biased gene conversion embedded in an evolutionary stable karyotype. Mol Biol Evol (2013) 0.97
Transcriptome sequencing reveals the character of incomplete dosage compensation across multiple tissues in flycatchers. Genome Biol Evol (2013) 0.96
A guide to the genomics of ecological speciation in natural animal populations. Ecol Lett (2010) 0.95
QTL linkage mapping of zebra finch beak color shows an oligogenic control of a sexually selected trait. Evolution (2011) 0.94
Quantification of adaptive evolution of genes expressed in avian brain and the population size effect on the efficacy of selection. Mol Biol Evol (2009) 0.93
A low rate of simultaneous double-nucleotide mutations in primates. Mol Biol Evol (2003) 0.93
Estimation of linkage disequilibrium and interspecific gene flow in Ficedula flycatchers by a newly developed 50k single-nucleotide polymorphism array. Mol Ecol Resour (2014) 0.93
Ancient DNA reveals traces of Iberian Neolithic and Bronze Age lineages in modern Iberian horses. Mol Ecol (2009) 0.91
Patterns of sequencing coverage bias revealed by ultra-deep sequencing of vertebrate mitochondria. BMC Genomics (2014) 0.91
Adaptive molecular evolution of HINTW, a female-specific gene in birds. Mol Biol Evol (2003) 0.90
Novel approach for deriving genome wide SNP analysis data from archived blood spots. BMC Res Notes (2012) 0.90
Individual variation in microsatellite mutation rate in barn swallows. Mutat Res (2004) 0.90