Analysis of early host responses for asymptomatic disease detection and management of specialty crops.

PubWeight™: 0.94‹?›

🔗 View Article (PMID 20370635)

Published in Crit Rev Immunol on January 01, 2010

Authors

Abhaya M Dandekar1, Federico Martinelli, Cristina E Davis, Abhinav Bhushan, Weixiang Zhao, Oliver Fiehn, Kirsten Skogerson, Gert Wohlgemuth, Raissa D'Souza, Soumen Roy, Russell L Reagan, Dawei Lin, R Cary, Paige Pardington, Goutam Gupta

Author Affiliations

1: Plant Sciences, University of California, Davis, CA 95616, USA. amdandekar@ucdavis.edu

Articles by these authors

Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project. Nat Biotechnol (2008) 12.96

Assemblathon 1: a competitive assessment of de novo short read assembly methods. Genome Res (2011) 8.38

Proposed minimum reporting standards for chemical analysis Chemical Analysis Working Group (CAWG) Metabolomics Standards Initiative (MSI). Metabolomics (2007) 6.93

Potential of metabolomics as a functional genomics tool. Trends Plant Sci (2004) 4.10

FiehnLib: mass spectral and retention index libraries for metabolomics based on quadrupole and time-of-flight gas chromatography/mass spectrometry. Anal Chem (2009) 3.71

Seven Golden Rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry. BMC Bioinformatics (2007) 3.70

A proposed framework for the description of plant metabolomics experiments and their results. Nat Biotechnol (2004) 3.32

A comprehensive urinary metabolomic approach for identifying kidney cancerr. Anal Biochem (2007) 3.14

Metabolomic database annotations via query of elemental compositions: mass accuracy is insufficient even at less than 1 ppm. BMC Bioinformatics (2006) 3.02

Quality control for plant metabolomics: reporting MSI-compliant studies. Plant J (2008) 2.97

Process for the integrated extraction, identification and quantification of metabolites, proteins and RNA to reveal their co-regulation in biochemical networks. Proteomics (2004) 2.81

Mass spectrometry-based metabolic profiling reveals different metabolite patterns in invasive ovarian carcinomas and ovarian borderline tumors. Cancer Res (2006) 2.68

A prominent role for the CBF cold response pathway in configuring the low-temperature metabolome of Arabidopsis. Proc Natl Acad Sci U S A (2004) 2.64

Differential metabolic networks unravel the effects of silent plant phenotypes. Proc Natl Acad Sci U S A (2004) 2.63

The metabolomics standards initiative. Nat Biotechnol (2007) 2.54

The metabolic signature related to high plant growth rate in Arabidopsis thaliana. Proc Natl Acad Sci U S A (2007) 2.44

Mass-spectrometry-based metabolomics: limitations and recommendations for future progress with particular focus on nutrition research. Metabolomics (2009) 2.21

SetupX--a public study design database for metabolomic projects. Pac Symp Biocomput (2007) 2.20

Natural genetic variation of freezing tolerance in Arabidopsis. Plant Physiol (2006) 2.10

Human gut microbiome adopts an alternative state following small bowel transplantation. Proc Natl Acad Sci U S A (2009) 2.08

Novel theranostic opportunities offered by characterization of altered membrane lipid metabolism in breast cancer progression. Cancer Res (2011) 2.07

Metabolite profiling of human colon carcinoma--deregulation of TCA cycle and amino acid turnover. Mol Cancer (2008) 2.02

Analysis of highly polar compounds of plant origin: combination of hydrophilic interaction chromatography and electrospray ion trap mass spectrometry. Anal Biochem (2002) 1.93

Systems rebalancing of metabolism in response to sulfur deprivation, as revealed by metabolome analysis of Arabidopsis plants. Plant Physiol (2005) 1.89

LipidBlast in silico tandem mass spectrometry database for lipid identification. Nat Methods (2013) 1.78

Pathway analysis of kidney cancer using proteomics and metabolic profiling. Mol Cancer (2006) 1.78

Advances in structure elucidation of small molecules using mass spectrometry. Bioanal Rev (2010) 1.76

Hierarchical metabolomics demonstrates substantial compositional similarity between genetically modified and conventional potato crops. Proc Natl Acad Sci U S A (2005) 1.75

Activation of aryl hydrocarbon receptor induces vascular inflammation and promotes atherosclerosis in apolipoprotein E-/- mice. Arterioscler Thromb Vasc Biol (2011) 1.75

Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations. Plant J (2007) 1.74

How large is the metabolome? A critical analysis of data exchange practices in chemistry. PLoS One (2009) 1.73

A metabolomics approach using juvenile cystic mice to identify urinary biomarkers and altered pathways in polycystic kidney disease. Am J Physiol Renal Physiol (2010) 1.63

Metabolite profiling of Chlamydomonas reinhardtii under nutrient deprivation. Plant Physiol (2005) 1.62

Distinct cardiogenic preferences of two human embryonic stem cell (hESC) lines are imprinted in their proteomes in the pluripotent state. Biochem Biophys Res Commun (2008) 1.59

MetaMapp: mapping and visualizing metabolomic data by integrating information from biochemical pathways and chemical and mass spectral similarity. BMC Bioinformatics (2012) 1.56

The volatile compound BinBase mass spectral database. BMC Bioinformatics (2011) 1.55

The Chemical Translation Service--a web-based tool to improve standardization of metabolomic reports. Bioinformatics (2010) 1.51

Monolithic silica-based capillary reversed-phase liquid chromatography/electrospray mass spectrometry for plant metabolomics. Anal Chem (2003) 1.44

High copper selectively alters lipid metabolism and cell cycle machinery in the mouse model of Wilson disease. J Biol Chem (2007) 1.43

Divergent metabolome and proteome suggest functional independence of dual phloem transport systems in cucurbits. Proc Natl Acad Sci U S A (2010) 1.42

Soluble epoxide hydrolase inhibitors reduce the development of atherosclerosis in apolipoprotein e-knockout mouse model. J Cardiovasc Pharmacol (2008) 1.42

Plant metabolomics: the missing link in functional genomics strategies. Plant Cell (2002) 1.37

Novel peptide inhibitors of angiotensin-converting enzyme 2. J Biol Chem (2003) 1.36

Merging pharmacometabolomics with pharmacogenomics using '1000 Genomes' single-nucleotide polymorphism imputation: selective serotonin reuptake inhibitor response pharmacogenomics. Pharmacogenet Genomics (2012) 1.34

Life in the fast lane for protein crystallization and X-ray crystallography. Prog Biophys Mol Biol (2005) 1.33

MamuSNP: a resource for Rhesus Macaque (Macaca mulatta) genomics. PLoS One (2007) 1.29

Application of metabolomics to plant genotype discrimination using statistics and machine learning. Bioinformatics (2002) 1.25

Mitochondrial DNA variant discovery and evaluation in human Cardiomyopathies through next-generation sequencing. PLoS One (2010) 1.25

High quality metabolomic data for Chlamydomonas reinhardtii. Plant Methods (2008) 1.23

Metabolomics reveals amino acids contribute to variation in response to simvastatin treatment. PLoS One (2012) 1.22

Parameter-space screening: a powerful tool for high-throughput crystal structure determination. Acta Crystallogr D Biol Crystallogr (2005) 1.20

Applications of metabolomics in agriculture. J Agric Food Chem (2006) 1.20

Avian influenza in birds and mammals. Comp Immunol Microbiol Infect Dis (2008) 1.19

Defining the regulated secreted proteome of rodent adipocytes upon the induction of insulin resistance. J Proteome Res (2008) 1.19

Complete Genome Sequence of a Chinese Strain of "Candidatus Liberibacter asiaticus". Genome Announc (2013) 1.18

Metabolomics as a Hypothesis-Generating Functional Genomics Tool for the Annotation of Arabidopsis thaliana Genes of "Unknown Function". Front Plant Sci (2012) 1.17

Genome-Scale Analysis of Programmed DNA Elimination Sites in Tetrahymena thermophila. G3 (Bethesda) (2011) 1.16

PlantMetabolomics.org: a web portal for plant metabolomics experiments. Plant Physiol (2010) 1.15

Can we discover novel pathways using metabolomic analysis? Curr Opin Biotechnol (2002) 1.14

Species-specific bacteria identification using differential mobility spectrometry and bioinformatics pattern recognition. Anal Chem (2005) 1.12

Transcriptome profiling of citrus fruit response to huanglongbing disease. PLoS One (2012) 1.11

System response of metabolic networks in Chlamydomonas reinhardtii to total available ammonium. Mol Cell Proteomics (2012) 1.11

Pharmacometabolomics reveals racial differences in response to atenolol treatment. PLoS One (2013) 1.10

Qualitative analysis of algal secretions with multiple mass spectrometric platforms. J Chromatogr A (2012) 1.10

Remodeling of central metabolism in invasive breast cancer compared to normal breast tissue - a GC-TOFMS based metabolomics study. BMC Genomics (2012) 1.10

Statistical methods for comparing comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry results: metabolomic analysis of mouse tissue extracts. J Chromatogr A (2005) 1.10

Induction of cytokines and chemokines by Toll-like receptor signaling: strategies for control of inflammation. Crit Rev Immunol (2010) 1.10

Inner ear supporting cells protect hair cells by secreting HSP70. J Clin Invest (2013) 1.10

Heterosis manifestation during early Arabidopsis seedling development is characterized by intermediate gene expression and enhanced metabolic activity in the hybrids. Plant J (2012) 1.09

Metabolomics Standards Workshop and the development of international standards for reporting metabolomics experimental results. Brief Bioinform (2006) 1.09

Diagnostic potential of plasmatic MicroRNA signatures in stable and unstable angina. PLoS One (2013) 1.09

Changes in the proteomic and metabolic profiles of Beta vulgaris root tips in response to iron deficiency and resupply. BMC Plant Biol (2010) 1.09

Gene regulatory networks elucidating huanglongbing disease mechanisms. PLoS One (2013) 1.07

Computational annotation of genes differentially expressed along olive fruit development. BMC Plant Biol (2009) 1.07

Metabolomic and transcriptomic analysis of the rice response to the bacterial blight pathogen Xanthomonas oryzae pv. oryzae. Metabolomics (2010) 1.06

Metabolomics of human breast cancer: new approaches for tumor typing and biomarker discovery. Genome Med (2012) 1.06

Whole genome sequencing of peach (Prunus persica L.) for SNP identification and selection. BMC Genomics (2011) 1.04

Computer prediction of possible toxic action from chemical structure: an update on the DEREK system. Toxicology (1996) 1.04

Application of liquid chromatography-mass spectrometry analysis in metabolomics: reversed-phase monolithic capillary chromatography and hydrophilic chromatography coupled to electrospray ionization-mass spectrometry. Methods Mol Biol (2007) 1.04

Impact of genetics and environment on the metabolite composition of maize grain. J Agric Food Chem (2010) 1.04

Machine Learning: A Crucial Tool for Sensor Design. Algorithms (2008) 1.03

Effects of facultative symbionts and heat stress on the metabolome of pea aphids. ISME J (2009) 1.02