Published in ISME J on April 15, 2010
The oral metagenome in health and disease. ISME J (2011) 2.25
Metagenomic analysis of kimchi, a traditional Korean fermented food. Appl Environ Microbiol (2011) 2.08
Abundant SAR11 viruses in the ocean. Nature (2013) 2.05
New abundant microbial groups in aquatic hypersaline environments. Sci Rep (2011) 1.84
Metagenomics of the water column in the pristine upper course of the Amazon river. PLoS One (2011) 1.74
Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean. ISME J (2010) 1.72
The microbiome of Brazilian mangrove sediments as revealed by metagenomics. PLoS One (2012) 1.50
Metavir 2: new tools for viral metagenome comparison and assembled virome analysis. BMC Bioinformatics (2014) 1.32
Expanding the marine virosphere using metagenomics. PLoS Genet (2013) 1.30
Going deeper: metagenome of a hadopelagic microbial community. PLoS One (2011) 1.23
Metagenomics uncovers a new group of low GC and ultra-small marine Actinobacteria. Sci Rep (2013) 1.13
Metagenomes of Mediterranean coastal lagoons. Sci Rep (2012) 1.11
Molecular detection of eukaryotes in a single human stool sample from Senegal. PLoS One (2012) 1.08
ProPortal: a resource for integrated systems biology of Prochlorococcus and its phage. Nucleic Acids Res (2011) 0.98
Polyclonality of concurrent natural populations of Alteromonas macleodii. Genome Biol Evol (2012) 0.98
Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus. Sci Data (2014) 0.96
Patterns of ecological specialization among microbial populations in the Red Sea and diverse oligotrophic marine environments. Ecol Evol (2013) 0.96
Pangenome evidence for extensive interdomain horizontal transfer affecting lineage core and shell genes in uncultured planktonic thaumarchaeota and euryarchaeota. Genome Biol Evol (2014) 0.95
Complete-fosmid and fosmid-end sequences reveal frequent horizontal gene transfers in marine uncultured planktonic archaea. ISME J (2011) 0.94
Ecophysiology of uncultivated marine euryarchaea is linked to particulate organic matter. ISME J (2015) 0.91
Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities. ISME J (2014) 0.90
Genetic diversity in cultured and wild marine cyanomyoviruses reveals phosphorus stress as a strong selective agent. ISME J (2013) 0.89
Bacterial gene import and mesophilic adaptation in archaea. Nat Rev Microbiol (2015) 0.89
Reconstruction of novel cyanobacterial siphovirus genomes from Mediterranean metagenomic fosmids. Appl Environ Microbiol (2012) 0.88
A new class of marine Euryarchaeota group II from the Mediterranean deep chlorophyll maximum. ISME J (2014) 0.88
Ribonucleotide reductases reveal novel viral diversity and predict biological and ecological features of unknown marine viruses. Proc Natl Acad Sci U S A (2014) 0.87
A metagenomics transect into the deepest point of the Baltic Sea reveals clear stratification of microbial functional capacities. PLoS One (2013) 0.86
Comparison of large-insert, small-insert and pyrosequencing libraries for metagenomic analysis. ISME J (2012) 0.85
Genomes of Alteromonas australica, a world apart. BMC Genomics (2014) 0.85
Marine Bacterial and Archaeal Ion-Pumping Rhodopsins: Genetic Diversity, Physiology, and Ecology. Microbiol Mol Biol Rev (2016) 0.84
Acid-shifted isoelectric point profiles of the proteins in a hypersaline microbial mat: an adaptation to life at high salt concentrations? Extremophiles (2012) 0.84
Tales from a thousand and one phages. Bacteriophage (2014) 0.83
Core microbial functional activities in ocean environments revealed by global metagenomic profiling analyses. PLoS One (2014) 0.83
Comparison of prokaryotic community structure from Mediterranean and Atlantic saltern concentrator ponds by a metagenomic approach. Front Microbiol (2014) 0.83
Genomes of planktonic Acidimicrobiales: widening horizons for marine Actinobacteria by metagenomics. MBio (2015) 0.82
Comparing and Evaluating Metagenome Assembly Tools from a Microbiologist's Perspective - Not Only Size Matters! PLoS One (2017) 0.82
Marine cyanophages demonstrate biogeographic patterns throughout the global ocean. Appl Environ Microbiol (2014) 0.79
Polar freshwater cyanophage S-EIV1 represents a new widespread evolutionary lineage of phages. ISME J (2015) 0.79
Genomes of Abundant and Widespread Viruses from the Deep Ocean. MBio (2016) 0.78
Insights into the Microbial and Viral Dynamics of a Coastal Downwelling-Upwelling Transition. PLoS One (2015) 0.78
Current and future resources for functional metagenomics. Front Microbiol (2015) 0.77
Prevalence of psbA-containing cyanobacterial podoviruses in the ocean. Sci Rep (2013) 0.76
New insights into marine group III Euryarchaeota, from dark to light. ISME J (2017) 0.75
Not All Particles Are Equal: The Selective Enrichment of Particle-Associated Bacteria from the Mediterranean Sea. Front Microbiol (2016) 0.75
Co-option of bacteriophage lysozyme genes by bivalve genomes. Open Biol (2017) 0.75
Abundance of Two Pelagibacter ubique Bacteriophage Genotypes along a Latitudinal Transect in the North and South Atlantic Oceans. Front Microbiol (2016) 0.75
Metagenomic covariation along densely sampled environmental gradients in the Red Sea. ISME J (2016) 0.75
Novel Synechococcus Genomes Reconstructed from Freshwater Reservoirs. Front Microbiol (2017) 0.75
Functional variants in the B-cell gene BANK1 are associated with systemic lupus erythematosus. Nat Genet (2008) 5.00
High-density genetic mapping identifies new susceptibility loci for rheumatoid arthritis. Nat Genet (2012) 4.46
Explaining microbial population genomics through phage predation. Nat Rev Microbiol (2009) 3.87
The human milk microbiome changes over lactation and is shaped by maternal weight and mode of delivery. Am J Clin Nutr (2012) 3.51
The molecular ecology of microbial eukaryotes unveils a hidden world. Trends Microbiol (2002) 3.32
Viral and microbial community dynamics in four aquatic environments. ISME J (2010) 2.95
Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci. Nat Genet (2013) 2.87
Genome-wide association study of systemic sclerosis identifies CD247 as a new susceptibility locus. Nat Genet (2010) 2.61
Association of a functional variant downstream of TNFAIP3 with systemic lupus erythematosus. Nat Genet (2011) 2.54
Ancestral lipid biosynthesis and early membrane evolution. Trends Biochem Sci (2004) 2.49
The genome of the square archaeon Haloquadratum walsbyi : life at the limits of water activity. BMC Genomics (2006) 2.48
Ten reasons to exclude viruses from the tree of life. Nat Rev Microbiol (2009) 2.39
HLA-DRB1 and persistent chronic inflammation contribute to cardiovascular events and cardiovascular mortality in patients with rheumatoid arthritis. Arthritis Rheum (2007) 2.28
The oral metagenome in health and disease. ISME J (2011) 2.25
Carotid intima-media thickness predicts the development of cardiovascular events in patients with rheumatoid arthritis. Semin Arthritis Rheum (2008) 2.21
Rheumatoid arthritis: a disease associated with accelerated atherogenesis. Semin Arthritis Rheum (2005) 2.12
Autochthonous eukaryotic diversity in hydrothermal sediment and experimental microcolonizers at the Mid-Atlantic Ridge. Proc Natl Acad Sci U S A (2003) 2.10
Modern Quaternary plant lineages promote diversity through facilitation of ancient Tertiary lineages. Proc Natl Acad Sci U S A (2006) 2.06
Tracking microbial biodiversity through molecular and genomic ecology. Res Microbiol (2007) 1.97
Eubacterial phylogeny based on translational apparatus proteins. Trends Genet (2002) 1.95
Facilitation can increase the phylogenetic diversity of plant communities. Ecol Lett (2007) 1.92
An early-branching microbialite cyanobacterium forms intracellular carbonates. Science (2012) 1.86
TNFA -308 (rs1800629) polymorphism is associated with a higher risk of cardiovascular disease in patients with rheumatoid arthritis. Atherosclerosis (2011) 1.81
Isolation and cultivation of Walsby's square archaeon. Environ Microbiol (2004) 1.81
Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy. PLoS Genet (2011) 1.80
Environmental genomics of "Haloquadratum walsbyi" in a saltern crystallizer indicates a large pool of accessory genes in an otherwise coherent species. BMC Genomics (2006) 1.80
Metagenomics of the deep Mediterranean, a warm bathypelagic habitat. PLoS One (2007) 1.78
Endothelial dysfunction in psoriatic arthritis patients without clinically evident cardiovascular disease or classic atherosclerosis risk factors. Arthritis Rheum (2007) 1.78
Metagenomics of the water column in the pristine upper course of the Amazon river. PLoS One (2011) 1.74
Epidemiology of giant cell arteritis and polymyalgia rheumatica. Arthritis Rheum (2009) 1.70
Microbiome diversity in the bronchial tracts of patients with chronic obstructive pulmonary disease. J Clin Microbiol (2012) 1.61
Global dispersal and ancient cryptic species in the smallest marine eukaryotes. Mol Biol Evol (2005) 1.57
Sealing, refurbishment and repair of Class I and Class II defective restorations: a three-year clinical trial. J Am Dent Assoc (2009) 1.56
The extent of protist diversity: insights from molecular ecology of freshwater eukaryotes. Proc Biol Sci (2005) 1.55
Genomic plasticity in prokaryotes: the case of the square haloarchaeon. ISME J (2007) 1.54
Kallikrein genes are associated with lupus and glomerular basement membrane-specific antibody-induced nephritis in mice and humans. J Clin Invest (2009) 1.54
The environmental clade LKM11 and Rozella form the deepest branching clade of fungi. Protist (2009) 1.52
Origins and early evolution of the mevalonate pathway of isoprenoid biosynthesis in the three domains of life. Mol Biol Evol (2010) 1.52
Ecological interactions are evolutionarily conserved across the entire tree of life. Nature (2010) 1.51
Neoceratium gen. nov., a new genus for all marine species currently assigned to Ceratium (Dinophyceae). Protist (2009) 1.50
Comparative metagenomics of bathypelagic plankton and bottom sediment from the Sea of Marmara. ISME J (2010) 1.49
Fire reduces morphospace occupation in plant communities. Ecology (2008) 1.47
A loss-of-function variant of PTPN22 is associated with reduced risk of systemic lupus erythematosus. Hum Mol Genet (2008) 1.43
Identification of a systemic lupus erythematosus susceptibility locus at 11p13 between PDHX and CD44 in a multiethnic study. Am J Hum Genet (2010) 1.43
Identification of IRF8, TMEM39A, and IKZF3-ZPBP2 as susceptibility loci for systemic lupus erythematosus in a large-scale multiracial replication study. Am J Hum Genet (2012) 1.41
Phenotypic associations of genetic susceptibility loci in systemic lupus erythematosus. Ann Rheum Dis (2011) 1.41
Bacterial diversity in hydrothermal sediment and epsilonproteobacterial dominance in experimental microcolonizers at the Mid-Atlantic Ridge. Environ Microbiol (2003) 1.40
Association of the C8orf13-BLK region with systemic sclerosis in North-American and European populations. J Autoimmun (2009) 1.38
Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida. Proc Natl Acad Sci U S A (2013) 1.36
Rare, low-frequency, and common variants in the protein-coding sequence of biological candidate genes from GWASs contribute to risk of rheumatoid arthritis. Am J Hum Genet (2012) 1.35
Wide bacterial diversity associated with tubes of the vent worm Riftia pachyptila. Environ Microbiol (2002) 1.34
Failure to clear persistent vaccine-derived neurovirulent poliovirus infection in an immunodeficient man. Lancet (2004) 1.33
Metabolic symbiosis and the birth of the plant kingdom. Mol Biol Evol (2007) 1.33
Evolutionary relationships of Fusobacterium nucleatum based on phylogenetic analysis and comparative genomics. BMC Evol Biol (2004) 1.32
Comparative genomics of gene-family size in closely related bacteria. Genome Biol (2004) 1.31
High prevalence of subclinical atherosclerosis in psoriatic arthritis patients without clinically evident cardiovascular disease or classic atherosclerosis risk factors. Arthritis Rheum (2007) 1.31
Co-circulation and evolution of polioviruses and species C enteroviruses in a district of Madagascar. PLoS Pathog (2007) 1.31
Breaking a paradigm: cosmopolitan and abundant freshwater actinobacteria are low GC. Environ Microbiol Rep (2011) 1.31
Microbiological survey of the human gastric ecosystem using culturing and pyrosequencing methods. Microb Ecol (2013) 1.28
The early evolution of lipid membranes and the three domains of life. Nat Rev Microbiol (2012) 1.28
Genomes of surface isolates of Alteromonas macleodii: the life of a widespread marine opportunistic copiotroph. Sci Rep (2012) 1.28
Endothelial dysfunction, carotid intima-media thickness, and accelerated atherosclerosis in rheumatoid arthritis. Semin Arthritis Rheum (2008) 1.26
Effect of anti-tumor necrosis factor alpha therapy on the progression of subclinical atherosclerosis in severe rheumatoid arthritis. Arthritis Rheum (2006) 1.24
A GWAS follow-up study reveals the association of the IL12RB2 gene with systemic sclerosis in Caucasian populations. Hum Mol Genet (2011) 1.24
In vitro evaluation of shear bond strengths of resin to densely-sintered high-purity zirconium-oxide ceramic after long-term storage and thermal cycling. J Prosthet Dent (2004) 1.23
Metagenomic islands of hyperhalophiles: the case of Salinibacter ruber. BMC Genomics (2009) 1.22
Association of PDCD1 with susceptibility to systemic lupus erythematosus: evidence of population-specific effects. Arthritis Rheum (2004) 1.22
Comment on "The 1.2-megabase genome sequence of Mimivirus". Science (2005) 1.21
Clinicopathologic profile of gastrointestinal stromal tumors (GISTs) with primary KIT exon 13 or exon 17 mutations: a multicenter study on 54 cases. Mod Pathol (2008) 1.20
Diversity and vertical distribution of microbial eukaryotes in the snow, sea ice and seawater near the north pole at the end of the polar night. Front Microbiol (2011) 1.20
Circadian clock regulation of starch metabolism establishes GBSSI as a major contributor to amylopectin synthesis in Chlamydomonas reinhardtii. Plant Physiol (2006) 1.20
A1298C polymorphism in the MTHFR gene predisposes to cardiovascular risk in rheumatoid arthritis. Arthritis Res Ther (2010) 1.20
Nanoscale detection of organic signatures in carbonate microbialites. Proc Natl Acad Sci U S A (2006) 1.19
Therapeutic effect of vasoactive intestinal peptide on experimental autoimmune encephalomyelitis: down-regulation of inflammatory and autoimmune responses. Am J Pathol (2006) 1.19
The TRAF1-C5 region on chromosome 9q33 is associated with multiple autoimmune diseases. Ann Rheum Dis (2009) 1.17
Eukaryotic diversity associated with carbonates and fluid-seawater interface in Lost City hydrothermal field. Environ Microbiol (2007) 1.17
Identification of CSK as a systemic sclerosis genetic risk factor through Genome Wide Association Study follow-up. Hum Mol Genet (2012) 1.17
Comparative analysis of a genome fragment of an uncultivated mesopelagic crenarchaeote reveals multiple horizontal gene transfers. Environ Microbiol (2004) 1.17
Effects of Culture Conditions on Poly(beta-Hydroxybutyric Acid) Production by Haloferax mediterranei. Appl Environ Microbiol (1990) 1.16
Plastidial phosphorylase is required for normal starch synthesis in Chlamydomonas reinhardtii. Plant J (2006) 1.15
Metagenomics uncovers a new group of low GC and ultra-small marine Actinobacteria. Sci Rep (2013) 1.13
Phytoplankton diversity and cyanobacterial dominance in a hypereutrophic shallow lake with biologically produced alkaline pH. Extremophiles (2003) 1.13