Published in J Biomed Sci on May 11, 2010
RNA-sequencing from single nuclei. Proc Natl Acad Sci U S A (2013) 1.15
Human mesenchymal stem cell expression program upon extended ex-vivo cultivation, as revealed by 2-DE-based quantitative proteomics. PLoS One (2012) 0.99
In vitro cell migration and invasion assays. J Vis Exp (2014) 0.96
Mitochondrial proteomics analysis of tumorigenic and metastatic breast cancer markers. Funct Integr Genomics (2011) 0.94
Orthotopic injection of breast cancer cells into the mammary fat pad of mice to study tumor growth. J Vis Exp (2015) 0.93
A novel ATAC-seq approach reveals lineage-specific reinforcement of the open chromatin landscape via cooperation between BAF and p63. Genome Biol (2015) 0.88
Prioritizing therapeutic targets using patient-derived xenograft models. Biochim Biophys Acta (2015) 0.88
Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons. Nat Protoc (2016) 0.88
Spatial mapping of the biologic effectiveness of scanned particle beams: towards biologically optimized particle therapy. Sci Rep (2015) 0.86
Stem cell death and survival in heart regeneration and repair. Apoptosis (2016) 0.84
CD133-positive tumor cell content is a predictor of early recurrence in colorectal cancer. J Gastrointest Oncol (2014) 0.83
Single exosome study reveals subpopulations distributed among cell lines with variability related to membrane content. J Extracell Vesicles (2015) 0.82
A cell line resource derived from honey bee (Apis mellifera) embryonic tissues. PLoS One (2013) 0.81
Copy number variants are produced in response to low-dose ionizing radiation in cultured cells. Environ Mol Mutagen (2013) 0.81
Research applications of proteolytic enzymes in molecular biology. Biomolecules (2013) 0.81
Automated Electrophysiological and Pharmacological Evaluation of Human Pluripotent Stem Cell-Derived Cardiomyocytes. Stem Cells Dev (2016) 0.80
Bone marrow-derived mesenchymal stem cells for the treatment of heart failure. Heart Fail Rev (2015) 0.80
Influence of cell detachment on the respiration rate of tumor and endothelial cells. PLoS One (2013) 0.79
A safe and efficient method to retrieve mesenchymal stem cells from three-dimensional fibrin gels. Tissue Eng Part C Methods (2013) 0.78
An apical actin-rich domain drives the establishment of cell polarity during cell adhesion. Histochem Cell Biol (2012) 0.78
Characterization of growth suppressive functions of a splice variant of cyclin D2. PLoS One (2013) 0.78
Dissecting the stem cell niche with organoid models: an engineering-based approach. Development (2017) 0.77
Proteome differences between male and female fetal cells in amniotic fluid. OMICS (2012) 0.77
Effect of glutathione reductase knockdown in response to UVB-induced oxidative stress in human lung adenocarcinoma. Proteome Sci (2014) 0.76
A thermoresponsive and magnetic colloid for 3D cell expansion and reconfiguration. Adv Mater (2014) 0.76
The Effects of TiO2 Nanodot Films with RGD Immobilization on Light-Induced Cell Sheet Technology. Biomed Res Int (2015) 0.75
Use of Mesothelial Cells and Biological Matrices for Tissue Engineering of Simple Epithelium Surrogates. Front Bioeng Biotechnol (2015) 0.75
Activation of the Notch1 Stem Cell Signaling Pathway during Routine Cell Line Subculture. Front Oncol (2014) 0.75
Sol-Generating Chemical Vapor into Liquid (SG-CViL) Deposition- A Facile Method for Encapsulation of Diverse Cell Types in Silica Matrices. J Mater Chem B Mater Biol Med (2015) 0.75
The likely role of proteolytic enzymes in unwanted differentiation of stem cells in culture. Future Sci OA (2015) 0.75
Best practices for naming, receiving, and managing cells in culture. In Vitro Cell Dev Biol Anim (2017) 0.75
Microcarriers with Synthetic Hydrogel Surfaces for Stem Cell Expansion. Adv Healthc Mater (2017) 0.75
Global profiling of the cell surface proteome of cancer cells uncovers an abundance of proteins with chaperone function. J Biol Chem (2002) 3.02
The development of the DIGE system: 2D fluorescence difference gel analysis technology. Anal Bioanal Chem (2005) 2.64
The voltage-dependent anion channel: an essential player in apoptosis. Biochimie (2002) 1.75
Profiling of the cell surface proteome. Proteomics (2003) 1.38
Difference gel electrophoresis. Proteomics (2008) 1.29
Expression of E-cadherin and N-cadherin in surface epithelial-stromal tumors of the ovary distinguishes mucinous from serous and endometrioid tumors. Hum Pathol (1997) 1.28
DIGE compatible labelling of surface proteins on vital cells in vitro and in vivo. Proteomics (2006) 1.17
Proteomic analysis of redox- and ErbB2-dependent changes in mammary luminal epithelial cells using cysteine- and lysine-labelling two-dimensional difference gel electrophoresis. Proteomics (2005) 1.14
A novel mutation in the tyrosine kinase domain of ERBB2 in hepatocellular carcinoma. BMC Cancer (2006) 1.10
Secretomic and proteomic analysis of potential breast cancer markers by two-dimensional differential gel electrophoresis. J Proteome Res (2010) 1.09
Influence of the cytoplasmic domain of E-cadherin on endogenous N-cadherin expression in malignant melanoma. Oncogene (2006) 1.08
Identification of heat shock protein 60 as a molecular mediator of alpha 3 beta 1 integrin activation. Cancer Res (2002) 1.08
Neoexpression of N-cadherin in E-cadherin positive colon cancers. Int J Cancer (2004) 0.99
Proteomics study of oxidative stress and Src kinase inhibition in H9C2 cardiomyocytes: a cell model of heart ischemia-reperfusion injury and treatment. Free Radic Biol Med (2010) 0.99
Major role of epidermal growth factor receptor and Src kinases in promoting oxidative stress-dependent loss of adhesion and apoptosis in epithelial cells. J Biol Chem (2009) 0.97
Proteomic analysis of UVC irradiation-induced damage of plasma proteins: Serum amyloid P component as a major target of photolysis. FEBS Lett (2006) 0.92
Difference gel electrophoresis based on lys/cys tagging. Methods Mol Biol (2008) 0.92
ERBB2 kinase domain mutation in a gastric cancer metastasis. APMIS (2005) 0.86
DUX4, a candidate gene of facioscapulohumeral muscular dystrophy, encodes a transcriptional activator of PITX1. Proc Natl Acad Sci U S A (2007) 3.32
Expression profiling of FSHD muscle supports a defect in specific stages of myogenic differentiation. Hum Mol Genet (2003) 2.50
Sources of variability and effect of experimental approach on expression profiling data interpretation. BMC Bioinformatics (2002) 2.31
Nuclear envelope dystrophies show a transcriptional fingerprint suggesting disruption of Rb-MyoD pathways in muscle regeneration. Brain (2006) 2.22
Structural basis of a flavivirus recognized by its neutralizing antibody: solution structure of the domain III of the Japanese encephalitis virus envelope protein. J Biol Chem (2003) 2.09
Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays. Bioinformatics (2004) 1.98
Activation of the endoplasmic reticulum stress response in autoimmune myositis: potential role in muscle fiber damage and dysfunction. Arthritis Rheum (2005) 1.67
Alterations in mRNA expression and protein products following spinal cord injury in humans. J Physiol (2007) 1.55
Microtubules underlie dysfunction in duchenne muscular dystrophy. Sci Signal (2012) 1.54
An analysis of anesthesia-controlled operating room time after propofol-based total intravenous anesthesia compared with desflurane anesthesia in ophthalmic surgery: a retrospective study. Anesth Analg (2014) 1.52
Analysis of human skeletal muscle after 48 h immobilization reveals alterations in mRNA and protein for extracellular matrix components. J Appl Physiol (1985) (2006) 1.45
DSAP: deep-sequencing small RNA analysis pipeline. Nucleic Acids Res (2010) 1.41
SDF-1alpha up-regulates interleukin-6 through CXCR4, PI3K/Akt, ERK, and NF-kappaB-dependent pathway in microglia. Eur J Pharmacol (2009) 1.35
Wiskott-Aldrich syndrome protein and the cytoskeletal dynamics of dendritic cells. J Pathol (2004) 1.31
Combinational polymorphisms of four DNA repair genes XRCC1, XRCC2, XRCC3, and XRCC4 and their association with oral cancer in Taiwan. J Oral Pathol Med (2008) 1.29
Laboratory-based surveillance and molecular epidemiology of influenza virus in Taiwan. J Clin Microbiol (2005) 1.26
Downregulation of myelination, energy, and translational genes in Menkes disease brain. Mol Genet Metab (2005) 1.24
Role of WASP in cell polarity and podosome dynamics of myeloid cells. Eur J Cell Biol (2010) 1.20
Cloning, purification, crystallization and preliminary X-ray crystallographic analysis of XC847, a 3'-5' oligoribonuclease from Xanthomonas campestris. Acta Crystallogr Sect F Struct Biol Cryst Commun (2005) 1.19
Nuclear factor 90 mediates activation of the cellular antiviral expression cascade. AIDS Res Hum Retroviruses (2002) 1.16
Hypoxia induces BMP-2 expression via ILK, Akt, mTOR, and HIF-1 pathways in osteoblasts. J Cell Physiol (2010) 1.12
Solution structure of plant nonspecific lipid transfer protein-2 from rice (Oryza sativa). J Biol Chem (2002) 1.12
Predicting helix-helix interactions from residue contacts in membrane proteins. Bioinformatics (2009) 1.11
Secretomic and proteomic analysis of potential breast cancer markers by two-dimensional differential gel electrophoresis. J Proteome Res (2010) 1.09
Gene expression responses over 24 h to lengthening and shortening contractions in human muscle: major changes in CSRP3, MUSTN1, SIX1, and FBXO32. Physiol Genomics (2007) 1.09
CTGF enhances migration and MMP-13 up-regulation via alphavbeta3 integrin, FAK, ERK, and NF-kappaB-dependent pathway in human chondrosarcoma cells. J Cell Biochem (2009) 1.08
Human antimicrobial peptide LL-37 inhibits adhesion of Candida albicans by interacting with yeast cell-wall carbohydrates. PLoS One (2011) 1.08
Relationship between protein structures and disulfide-bonding patterns. Proteins (2003) 1.07
Identification of MYO18A as a novel interacting partner of the PAK2/betaPIX/GIT1 complex and its potential function in modulating epithelial cell migration. Mol Biol Cell (2009) 1.07
DUX4 expression in FSHD muscle cells: how could such a rare protein cause a myopathy? J Cell Mol Med (2012) 1.06
ISG15 over-expression inhibits replication of the Japanese encephalitis virus in human medulloblastoma cells. Antiviral Res (2009) 1.05
Prediction of B-cell linear epitopes with a combination of support vector machine classification and amino acid propensity identification. J Biomed Biotechnol (2011) 1.05
CPDB: a database of circular permutation in proteins. Nucleic Acids Res (2008) 1.05
Vibrio ruber sp. nov., a red, facultatively anaerobic, marine bacterium isolated from sea water. Int J Syst Evol Microbiol (2003) 1.05
Relationship between local structural entropy and protein thermostability. Proteins (2004) 1.04
Protein structural similarity search by Ramachandran codes. BMC Bioinformatics (2007) 1.04
Proteomic identification of salivary transferrin as a biomarker for early detection of oral cancer. Anal Chim Acta (2010) 1.03
NADPH oxidase-derived superoxide anion-induced apoptosis is mediated via the JNK-dependent activation of NF-κB in cardiomyocytes exposed to high glucose. J Cell Physiol (2012) 1.03
Dominant-negative effects of episodic ataxia type 2 mutations involve disruption of membrane trafficking of human P/Q-type Ca2+ channels. J Cell Physiol (2008) 1.03
Retrospective evaluation of serum markers APRI and AST/ALT for assessing liver fibrosis and cirrhosis in chronic hepatitis B and C patients with hepatocellular carcinoma. Intern Med (2008) 1.03
Inhibition of high-mobility group box 1 in lung reduced airway inflammation and remodeling in a mouse model of chronic asthma. Biochem Pharmacol (2013) 1.03
CPSARST: an efficient circular permutation search tool applied to the detection of novel protein structural relationships. Genome Biol (2008) 1.03
Rhein induces apoptosis in human breast cancer cells. Evid Based Complement Alternat Med (2011) 1.01
Thrombin-induced IL-6 production in human synovial fibroblasts is mediated by PAR1, phospholipase C, protein kinase C alpha, c-Src, NF-kappa B and p300 pathway. Mol Immunol (2007) 1.00
Synergistic contribution of CD14 and HLA loci in the susceptibility to Buerger disease. Hum Genet (2007) 1.00
Construction and analysis of a plant non-specific lipid transfer protein database (nsLTPDB). BMC Genomics (2012) 1.00
Proteomics study of oxidative stress and Src kinase inhibition in H9C2 cardiomyocytes: a cell model of heart ischemia-reperfusion injury and treatment. Free Radic Biol Med (2010) 0.99
Elevated IgG titers to periodontal pathogens related to Buerger disease. Int J Cardiol (2007) 0.99
Binding mechanism of nonspecific lipid transfer proteins and their role in plant defense. Biochemistry (2004) 0.99
Forty-eight hours of unloading and 24 h of reloading lead to changes in global gene expression patterns related to ubiquitination and oxidative stress in humans. J Appl Physiol (1985) (2010) 0.98
DNA damage and endoplasmic reticulum stress mediated curcumin-induced cell cycle arrest and apoptosis in human lung carcinoma A-549 cells through the activation caspases cascade- and mitochondrial-dependent pathway. Cancer Lett (2008) 0.98
WNT10A plays an oncogenic role in renal cell carcinoma by activating WNT/β-catenin pathway. PLoS One (2012) 0.97
Major role of epidermal growth factor receptor and Src kinases in promoting oxidative stress-dependent loss of adhesion and apoptosis in epithelial cells. J Biol Chem (2009) 0.97
Peptidoglycan induces interleukin-6 expression through the TLR2 receptor, JNK, c-Jun, and AP-1 pathways in microglia. J Cell Physiol (2011) 0.96
Suppression of ERCC1 and Rad51 expression through ERK1/2 inactivation is essential in emodin-mediated cytotoxicity in human non-small cell lung cancer cells. Biochem Pharmacol (2010) 0.96
Functional proteomic and structural insights into molecular targets related to the growth inhibitory effect of tanshinone IIA on HeLa cells. Proteomics (2010) 0.96
GI-POP: a combinational annotation and genomic island prediction pipeline for ongoing microbial genome projects. Gene (2013) 0.96
AmpN-AmpG operon is essential for expression of L1 and L2 beta-lactamases in Stenotrophomonas maltophilia. Antimicrob Agents Chemother (2010) 0.96
Helicobacter pylori cholesteryl glucosides interfere with host membrane phase and affect type IV secretion system function during infection in AGS cells. Mol Microbiol (2011) 0.96
A heparan sulfate-facilitated and raft-dependent macropinocytosis of eosinophil cationic protein. Traffic (2007) 0.96
Type I IFN induced IL1-Ra expression in hepatocytes is mediated by activating STAT6 through the formation of STAT2: STAT6 heterodimer. J Cell Mol Med (2008) 0.95
Fine-grained protein fold assignment by support vector machines using generalized npeptide coding schemes and jury voting from multiple-parameter sets. Proteins (2003) 0.95
Gene expression and muscle fiber function in a porcine ICU model. Physiol Genomics (2009) 0.95
Hypoxia-induced matrix metalloproteinase-13 expression in astrocytes enhances permeability of brain endothelial cells. J Cell Physiol (2009) 0.94
The domain III fragment of Japanese encephalitis virus envelope protein: mouse immunogenicity and liposome adjuvanticity. Vaccine (2003) 0.94
Nosocomial outbreak of infection with multidrug-resistant Acinetobacter baumannii in a medical center in Taiwan. Infect Control Hosp Epidemiol (2009) 0.94
Mitochondrial proteomics analysis of tumorigenic and metastatic breast cancer markers. Funct Integr Genomics (2011) 0.94
Puerariae radix isoflavones and their metabolites inhibit growth and induce apoptosis in breast cancer cells. Biochem Biophys Res Commun (2008) 0.94
Molecular epidemiology of the 2005 enterovirus 71 outbreak in central Taiwan. Scand J Infect Dis (2011) 0.93
Endothelial cell activation and neovascularization are prominent in dermatomyositis. J Autoimmune Dis (2006) 0.93
Structure-based protein engineering for alpha-amylase inhibitory activity of plant defensin. Proteins (2007) 0.92
Exercise prescription for hospitalized people with chronic obstructive pulmonary disease and comorbidities: a synthesis of systematic reviews. Int J Chron Obstruct Pulmon Dis (2012) 0.92
Antiviral Activity of Isatis indigotica Extract and Its Derived Indirubin against Japanese Encephalitis Virus. Evid Based Complement Alternat Med (2012) 0.92
Enhanced membrane protein topology prediction using a hierarchical classification method and a new scoring function. J Proteome Res (2008) 0.92
Interferon antagonist function of Japanese encephalitis virus NS4A and its interaction with DEAD-box RNA helicase DDX42. Virus Res (2008) 0.91
miR-411 is up-regulated in FSHD myoblasts and suppresses myogenic factors. Orphanet J Rare Dis (2013) 0.91
Human pancreatitis-associated protein forms fibrillar aggregates with a native-like conformation. J Biol Chem (2006) 0.91