PubRank

Sacha A F T van Hijum

Author PubWeight™ 53.50‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 The Lactococcus lactis CodY regulon: identification of a conserved cis-regulatory element. J Biol Chem 2005 2.11
2 Inferring patient to patient transmission of Mycobacterium tuberculosis from whole genome sequencing data. BMC Infect Dis 2013 2.01
3 Data mining in the Life Sciences with Random Forest: a walk in the park or lost in the jungle? Brief Bioinform 2012 2.00
4 Complete genome sequence of Lactococcus lactis subsp. lactis KF147, a plant-associated lactic acid bacterium. J Bacteriol 2010 1.90
5 The relative value of operon predictions. Brief Bioinform 2008 1.81
6 Complete resequencing and reannotation of the Lactobacillus plantarum WCFS1 genome. J Bacteriol 2012 1.71
7 Degenerate target sites mediate rapid primed CRISPR adaptation. Proc Natl Acad Sci U S A 2014 1.68
8 FIVA: Functional Information Viewer and Analyzer extracting biological knowledge from transcriptome data of prokaryotes. Bioinformatics 2007 1.65
9 BAGEL: a web-based bacteriocin genome mining tool. Nucleic Acids Res 2006 1.64
10 Genome analysis of Moraxella catarrhalis strain BBH18, [corrected] a human respiratory tract pathogen. J Bacteriol 2010 1.57
11 Regulation of glutamine and glutamate metabolism by GlnR and GlnA in Streptococcus pneumoniae. J Biol Chem 2006 1.50
12 ESSENTIALS: software for rapid analysis of high throughput transposon insertion sequencing data. PLoS One 2012 1.35
13 Multifactorial diversity sustains microbial community stability. ISME J 2013 1.29
14 Transcriptome analysis and related databases of Lactococcus lactis. Antonie Van Leeuwenhoek 2002 1.25
15 Genome-scale diversity and niche adaptation analysis of Lactococcus lactis by comparative genome hybridization using multi-strain arrays. Microb Biotechnol 2011 1.19
16 Transcriptome analysis reveals mechanisms by which Lactococcus lactis acquires nisin resistance. Antimicrob Agents Chemother 2006 1.19
17 Fructose utilization in Lactococcus lactis as a model for low-GC gram-positive bacteria: its regulator, signal, and DNA-binding site. J Bacteriol 2005 1.18
18 Microbiome dynamics of human epidermis following skin barrier disruption. Genome Biol 2012 1.15
19 Comparative and functional genomics of lactococci. FEMS Microbiol Rev 2005 1.05
20 Mixed-culture transcriptome analysis reveals the molecular basis of mixed-culture growth in Streptococcus thermophilus and Lactobacillus bulgaricus. Appl Environ Microbiol 2010 1.03
21 PhenoLink--a web-tool for linking phenotype to ~omics data for bacteria: application to gene-trait matching for Lactobacillus plantarum strains. BMC Genomics 2012 1.02
22 PanCGHweb: a web tool for genotype calling in pangenome CGH data. Bioinformatics 2010 1.00
23 Defining the structure of the general stress regulon of Bacillus subtilis using targeted microarray analysis and random forest classification. Microbiology 2011 0.98
24 Complete Genome of Lactococcus lactis subsp. cremoris UC509.9, Host for a Model Lactococcal P335 Bacteriophage. Genome Announc 2013 0.97
25 SpotXplore: a Cytoscape plugin for visual exploration of hotspot expression in gene regulatory networks. Bioinformatics 2010 0.92
26 DISCLOSE : DISsection of CLusters Obtained by SEries of transcriptome data using functional annotations and putative transcription factor binding sites. BMC Bioinformatics 2008 0.91
27 MINOMICS: visualizing prokaryote transcriptomics and proteomics data in a genomic context. Bioinformatics 2008 0.89
28 Fractional factorial design for optimization of the SELDI protocol for human adipose tissue culture media. Biotechnol Prog 2007 0.88
29 FACIL: Fast and Accurate Genetic Code Inference and Logo. Bioinformatics 2011 0.87
30 Genome (re-)annotation and open-source annotation pipelines. Microb Biotechnol 2010 0.87
31 Molecular description and industrial potential of Tn6098 conjugative transfer conferring alpha-galactoside metabolism in Lactococcus lactis. Appl Environ Microbiol 2010 0.87
32 Prosecutor: parameter-free inference of gene function for prokaryotes using DNA microarray data, genomic context and multiple gene annotation sources. BMC Genomics 2008 0.85
33 MOTIFATOR: detection and characterization of regulatory motifs using prokaryote transcriptome data. Bioinformatics 2009 0.85
34 Transcriptome analysis of the Lactococcus lactis ArgR and AhrC regulons. Appl Environ Microbiol 2008 0.85
35 Explaining microbial phenotypes on a genomic scale: GWAS for microbes. Brief Funct Genomics 2013 0.85
36 Diversity in robustness of Lactococcus lactis strains during heat stress, oxidative stress, and spray drying stress. Appl Environ Microbiol 2013 0.85
37 Reduce manual curation by combining gene predictions from multiple annotation engines, a case study of start codon prediction. PLoS One 2013 0.83
38 A predicted physicochemically distinct sub-proteome associated with the intracellular organelle of the anammox bacterium Kuenenia stuttgartiensis. BMC Genomics 2010 0.82
39 Genotype-phenotype matching analysis of 38 Lactococcus lactis strains using random forest methods. BMC Microbiol 2013 0.82
40 Screening metatranscriptomes for toxin genes as functional drivers of human colorectal cancer. Best Pract Res Clin Gastroenterol 2013 0.82
41 Genome sequence of Lactobacillus pentosus KCA1: vaginal isolate from a healthy premenopausal woman. PLoS One 2013 0.80
42 Genome-wide prediction and validation of sigma70 promoters in Lactobacillus plantarum WCFS1. PLoS One 2012 0.79
43 Genotypic adaptations associated with prolonged persistence of Lactobacillus plantarum in the murine digestive tract. Biotechnol J 2013 0.79
44 Microbial bioinformatics for food safety and production. Brief Bioinform 2015 0.78
45 Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes. BMC Genomics 2013 0.77
46 Transcriptomic signatures of peroxisome proliferator-activated receptor α (PPARα) in different mouse liver models identify novel aspects of its biology. BMC Genomics 2014 0.76
47 Draft Genome Sequence of Lactobacillus plantarum Lp90 Isolated from Wine. Genome Announc 2015 0.76
48 Advances and perspectives in computational prediction of microbial gene essentiality. Brief Funct Genomics 2017 0.76
49 An In vitro Model for Bacterial Growth on Human Stratum Corneum. Acta Derm Venereol 2016 0.75