|
1
|
An efficient algorithm for sorting by block-interchanges and its application to the evolution of vibrio species.
|
J Comput Biol
|
2005
|
1.32
|
|
2
|
SPRING: a tool for the analysis of genome rearrangement using reversals and block-interchanges.
|
Nucleic Acids Res
|
2006
|
1.23
|
|
3
|
SARSA: a web tool for structural alignment of RNA using a structural alphabet.
|
Nucleic Acids Res
|
2008
|
1.14
|
|
4
|
iPARTS: an improved tool of pairwise alignment of RNA tertiary structures.
|
Nucleic Acids Res
|
2010
|
1.08
|
|
5
|
FASTR3D: a fast and accurate search tool for similar RNA 3D structures.
|
Nucleic Acids Res
|
2009
|
1.06
|
|
6
|
Sorting by reversals, generalized transpositions, and translocations using permutation groups.
|
J Comput Biol
|
2010
|
0.95
|
|
7
|
Evolutionary analysis of the two-component systems in Pseudomonas aeruginosa PAO1.
|
J Mol Evol
|
2004
|
0.89
|
|
8
|
Analysis of genome rearrangement by block-interchanges.
|
Methods Mol Biol
|
2007
|
0.86
|
|
9
|
SoRT2: a tool for sorting genomes and reconstructing phylogenetic trees by reversals, generalized transpositions and translocations.
|
Nucleic Acids Res
|
2010
|
0.86
|
|
10
|
OGtree: a tool for creating genome trees of prokaryotes based on overlapping genes.
|
Nucleic Acids Res
|
2008
|
0.85
|
|
11
|
A heuristic approach for detecting RNA H-type pseudoknots.
|
Bioinformatics
|
2005
|
0.85
|
|
12
|
Reconstructing genome trees of prokaryotes using overlapping genes.
|
BMC Bioinformatics
|
2010
|
0.84
|
|
13
|
R3D-BLAST: a search tool for similar RNA 3D substructures.
|
Nucleic Acids Res
|
2011
|
0.84
|
|
14
|
Assembling contigs in draft genomes using reversals and block-interchanges.
|
BMC Bioinformatics
|
2013
|
0.83
|
|
15
|
Constrained multiple sequence alignment tool development and its application to RNase family alignment.
|
J Bioinform Comput Biol
|
2003
|
0.78
|
|
16
|
Sorting permutations by cut-circularize-linearize-and-paste operations.
|
BMC Genomics
|
2011
|
0.77
|
|
17
|
MuSiC: a tool for multiple sequence alignment with constraints.
|
Bioinformatics
|
2004
|
0.77
|
|
18
|
RE-MuSiC: a tool for multiple sequence alignment with regular expression constraints.
|
Nucleic Acids Res
|
2007
|
0.75
|
|
19
|
Constrained multiple sequence alignment tool development and its application to RNase family alignment.
|
Proc IEEE Comput Soc Bioinform Conf
|
2002
|
0.75
|