Published in Microb Ecol on May 29, 2010
Non-invasive determination of conjugative transfer of plasmids bearing antibiotic-resistance genes in biofilm-bound bacteria: effects of substrate loading and antibiotic selection. Appl Microbiol Biotechnol (2012) 0.82
Soil nitrate reducing processes - drivers, mechanisms for spatial variation, and significance for nitrous oxide production. Front Microbiol (2012) 0.82
Quantification of biofilm structures by the novel computer program COMSTAT. Microbiology (2000) 11.05
Computational improvements reveal great bacterial diversity and high metal toxicity in soil. Science (2005) 9.75
Toward a census of bacteria in soil. PLoS Comput Biol (2006) 3.61
Interactions and self-organization in the soil-microbe complex. Science (2004) 3.25
Microscale nutrient patches in planktonic habitats shown by chemotactic bacteria Science (1998) 3.02
daime, a novel image analysis program for microbial ecology and biofilm research. Environ Microbiol (2006) 2.88
Multiscale responses of microbial life to spatial distance and environmental heterogeneity in a patchy ecosystem. Proc Natl Acad Sci U S A (2007) 2.78
Bacterial mercury resistance from atoms to ecosystems. FEMS Microbiol Rev (2003) 2.72
Big questions, small worlds: microbial model systems in ecology. Trends Ecol Evol (2004) 2.61
The acquisition of indigenous plasmids by a genetically marked pseudomonad population colonizing the sugar beet phytosphere is related to local environmental conditions. Appl Environ Microbiol (1997) 1.81
Evaluation of biofilm image thresholding methods. Water Res (2001) 1.77
What makes Pseudomonas bacteria rhizosphere competent? Environ Microbiol (1999) 1.63
Genetic diversity of 'satellite' bacteria present in cultures of marine diatoms. FEMS Microbiol Ecol (2002) 1.49
CMEIAS: A Computer-Aided System for the Image Analysis of Bacterial Morphotypes in Microbial Communities. Microb Ecol (2001) 1.48
Nitrite concentration influences the population structure of Nitrospira-like bacteria. Environ Microbiol (2006) 1.43
Phylogenetic diversity and specificity of bacteria closely associated with Alexandrium spp. and other phytoplankton. Appl Environ Microbiol (2005) 1.42
A soil microscale study to reveal the heterogeneity of Hg(II) impact on indigenous bacteria by quantification of adapted phenotypes and analysis of community DNA fingerprints. FEMS Microbiol Ecol (2000) 1.27
In situ quantitation of the spatial scale of calling distances and population density-independent N-acylhomoserine lactone-mediated communication by rhizobacteria colonized on plant roots. FEMS Microbiol Ecol (2006) 1.20
Mucoid mutants of the biocontrol strain pseudomonas fluorescens CHA0 show increased ability in biofilm formation on mycorrhizal and nonmycorrhizal carrot roots. Mol Plant Microbe Interact (2001) 1.16
The effect of long-term mercury pollution on the soil microbial community. FEMS Microbiol Ecol (2001) 1.16
Progress towards understanding the fate of plasmids in bacterial communities. FEMS Microbiol Ecol (2008) 1.12
Frequency-dependent advantages of plasmid carriage by Pseudomonas in homogeneous and spatially structured environments. ISME J (2007) 1.06
Attachment of bacteria to the roots of higher plants. FEMS Microbiol Lett (2007) 1.03
Effects of mercury contamination on the culturable heterotrophic, functional and genetic diversity of the bacterial community in soil. FEMS Microbiol Ecol (2001) 1.00
Sequence-based analysis of pQBR103; a representative of a unique, transfer-proficient mega plasmid resident in the microbial community of sugar beet. ISME J (2007) 0.94
Adaptation of the bacterial community to mercury contamination. FEMS Microbiol Lett (2001) 0.86
Heterogeneous selection in a spatially structured environment affects fitness tradeoffs of plasmid carriage in pseudomonads. Appl Environ Microbiol (2008) 0.81
Microstructural differences between single-species and dual-species biofilms of Streptococcus mutans and Veillonella parvula, before and after exposure to chlorhexidine. FEMS Microbiol Lett (2007) 0.80
Stereological estimation of covariance using linear dipole probes. J Microsc (1999) 0.78
The role of ecological theory in microbial ecology. Nat Rev Microbiol (2007) 4.50
Array CGH analysis of copy number variation identifies 1284 new genes variant in healthy white males: implications for association studies of complex diseases. Hum Mol Genet (2007) 4.07
The contribution of species richness and composition to bacterial services. Nature (2005) 4.07
Larger islands house more bacterial taxa. Science (2005) 3.36
CTLs are targeted to kill beta cells in patients with type 1 diabetes through recognition of a glucose-regulated preproinsulin epitope. J Clin Invest (2008) 3.11
Partitioning core and satellite taxa from within cystic fibrosis lung bacterial communities. ISME J (2010) 2.55
Next generation sequencing of viral RNA genomes. BMC Genomics (2013) 2.10
A deletion of the HBII-85 class of small nucleolar RNAs (snoRNAs) is associated with hyperphagia, obesity and hypogonadism. Hum Mol Genet (2009) 1.95
Transferable antibiotic resistance elements in Haemophilus influenzae share a common evolutionary origin with a diverse family of syntenic genomic islands. J Bacteriol (2004) 1.93
Bacterial activity in cystic fibrosis lung infections. Respir Res (2005) 1.74
Does bacterial density in cystic fibrosis sputum increase prior to pulmonary exacerbation? J Cyst Fibros (2011) 1.53
Reducing bias in bacterial community analysis of lower respiratory infections. ISME J (2012) 1.46
Studying bacterial infections through culture-independent approaches. J Med Microbiol (2009) 1.38
Assessing the diagnostic importance of nonviable bacterial cells in respiratory infections. Diagn Microbiol Infect Dis (2008) 1.34
Staphylococcus aureus small-colony variants are independently associated with worse lung disease in children with cystic fibrosis. Clin Infect Dis (2013) 1.34
Analysis of the bacterial communities present in lungs of patients with cystic fibrosis from American and British centers. J Clin Microbiol (2010) 1.32
Clinical measures of disease in adult non-CF bronchiectasis correlate with airway microbiota composition. Thorax (2013) 1.28
A linear model method for biodiversity-ecosystem functioning experiments. Am Nat (2009) 1.26
Lung infections in cystic fibrosis: deriving clinical insight from microbial complexity. Expert Rev Mol Diagn (2010) 1.24
Temporal scaling of bacterial taxa is influenced by both stochastic and deterministic ecological factors. Environ Microbiol (2008) 1.23
Studying bacteria in respiratory specimens by using conventional and molecular microbiological approaches. BMC Pulm Med (2009) 1.22
Genomic variation among contemporary Pseudomonas aeruginosa isolates from chronically infected cystic fibrosis patients. J Bacteriol (2012) 1.20
Island size and bacterial diversity in an archipelago of engineering machines. Environ Microbiol (2005) 1.18
A novel microbiota stratification system predicts future exacerbations in bronchiectasis. Ann Am Thorac Soc (2014) 1.17
Decoupling the direct and indirect effects of nitrogen deposition on ecosystem function. Ecol Lett (2006) 1.17
Biofilm formation by mycoplasma species and its role in environmental persistence and survival. Microbiology (2006) 1.15
Circulating preproinsulin signal peptide-specific CD8 T cells restricted by the susceptibility molecule HLA-A24 are expanded at onset of type 1 diabetes and kill β-cells. Diabetes (2012) 1.15
The cystic fibrosis airway microbiome. Cold Spring Harb Perspect Med (2013) 1.14
Determining cystic fibrosis-affected lung microbiology: comparison of spontaneous and serially induced sputum samples by use of terminal restriction fragment length polymorphism profiling. J Clin Microbiol (2009) 1.13
Progress towards understanding the fate of plasmids in bacterial communities. FEMS Microbiol Ecol (2008) 1.12
Frequency-dependent advantages of plasmid carriage by Pseudomonas in homogeneous and spatially structured environments. ISME J (2007) 1.06
A mid-gut microbiota is not required for the pathogenicity of Bacillus thuringiensis to diamondback moth larvae. Environ Microbiol (2009) 1.04
Large-scale comparative genomic ranking of taxonomically restricted genes (TRGs) in bacterial and archaeal genomes. PLoS One (2007) 1.04
Anthropogenic disturbance affects the structure of bacterial communities. Environ Microbiol (2009) 1.02
Revealing the dynamics of polymicrobial infections: implications for antibiotic therapy. Trends Microbiol (2010) 1.01
Cyclic antimicrobial R-, W-rich peptides: the role of peptide structure and E. coli outer and inner membranes in activity and the mode of action. Eur Biophys J (2011) 1.01
Complete genome sequence of Ikoma lyssavirus. J Virol (2012) 1.00
Quorum sensing in context: out of molecular biology and into microbial ecology. Microbiology (2002) 1.00
16S rDNA PCR and denaturing gradient gel electrophoresis; a single generic test for detecting and differentiating Mycoplasma species. J Med Microbiol (2005) 0.98
Comparing the microbiota of the cystic fibrosis lung and human gut. Gut Microbes (2010) 0.97
Genetic Characterization of Highly Pathogenic Avian Influenza (H5N8) Virus from Domestic Ducks, England, November 2014. Emerg Infect Dis (2015) 0.97
Interpreting infective microbiota: the importance of an ecological perspective. Trends Microbiol (2013) 0.96
TRPV1 deletion enhances local inflammation and accelerates the onset of systemic inflammatory response syndrome. J Immunol (2012) 0.95
Lyssavirus in Indian Flying Foxes, Sri Lanka. Emerg Infect Dis (2016) 0.95
Sequence-based analysis of pQBR103; a representative of a unique, transfer-proficient mega plasmid resident in the microbial community of sugar beet. ISME J (2007) 0.94
Environmental factors determining the epidemiology and population genetic structure of the Bacillus cereus group in the field. PLoS Pathog (2010) 0.94
Spatial variation in Bacillus thuringiensis/cereus populations within the phyllosphere of broad-leaved dock (Rumex obtusifolius) and surrounding habitats. FEMS Microbiol Ecol (2005) 0.93
Genome sequence of Mycoplasma hyorhinis strain GDL-1. J Bacteriol (2012) 0.92
Coevolution between cooperators and cheats in a microbial system. Evolution (2009) 0.92
The indigenous Pseudomonas plasmid pQBR103 encodes plant-inducible genes, including three putative helicases. FEMS Microbiol Ecol (2004) 0.92
Differentiation of Mycoplasma species by 16S ribosomal DNA PCR and denaturing gradient gel electrophoresis fingerprinting. J Clin Microbiol (2003) 0.89
Enhancing the utility of existing antibiotics by targeting bacterial behaviour? Br J Pharmacol (2012) 0.88
Ascitic microbiota composition is correlated with clinical severity in cirrhosis with portal hypertension. PLoS One (2013) 0.88
Porcine Epidemic Diarrhea Virus among Farmed Pigs, Ukraine. Emerg Infect Dis (2015) 0.87
Comparison of the distal gut microbiota from people and animals in Africa. PLoS One (2013) 0.87
Bacterial community diversity in cultures derived from healthy and inflamed ileal pouches after restorative proctocolectomy. Inflamm Bowel Dis (2009) 0.86
Molecular microbiological characterization of preterm neonates at risk of bronchopulmonary dysplasia. Pediatr Res (2010) 0.86
Three clinically distinct chronic pediatric airway infections share a common core microbiota. Ann Am Thorac Soc (2014) 0.85
Is there an association between microbial exposure and food allergy? A systematic review. Pediatr Allergy Immunol (2013) 0.84
Next-generation sequencing in the analysis of human microbiota: essential considerations for clinical application. Mol Diagn Ther (2010) 0.83
Life in earth: the impact of GM plants on soil ecology? Trends Biotechnol (2005) 0.83
Quantifying the reproduction of Bacillus thuringiensis HD1 in cadavers and live larvae of Plutella xylostella. J Invertebr Pathol (2008) 0.83
The use of culture-independent tools to characterize bacteria in endo-tracheal aspirates from pre-term infants at risk of bronchopulmonary dysplasia. J Perinat Med (2010) 0.82
Moderation of pathogen-induced mortality: the role of density in Bacillus thuringiensis virulence. Biol Lett (2008) 0.82
Complexity, temporal stability, and clinical correlates of airway bacterial community composition in primary ciliary dyskinesia. J Clin Microbiol (2013) 0.82
The effect of a competitor on a model adaptive radiation. Evolution (2012) 0.82
Heterogeneous selection in a spatially structured environment affects fitness tradeoffs of plasmid carriage in pseudomonads. Appl Environ Microbiol (2008) 0.81
Using bacterial biomarkers to identify early indicators of cystic fibrosis pulmonary exacerbation onset. Expert Rev Mol Diagn (2011) 0.81
Biofilm-grown Mycoplasma mycoides subsp. mycoides SC exhibit both phenotypic and genotypic variation compared with planktonic cells. Vet Microbiol (2007) 0.80
Bacterial community structure and function in a metal-working fluid. Environ Microbiol (2003) 0.80
Molecular analysis of diversity within the genus Pseudomonas in the lungs of cystic fibrosis patients. Diagn Microbiol Infect Dis (2009) 0.79
Functional and phylogenetic analysis of a plant-inducible oligoribonuclease (orn) gene from an indigenous Pseudomonas plasmid. Microbiology (2004) 0.78
Pallister-Killian syndrome: an unusual cause of epileptic spasms. Dev Med Child Neurol (2005) 0.78
Two dnaB genes are associated with the origin of replication of pQBR55, an exogenously isolated plasmid from the rhizosphere of sugar beet. FEMS Microbiol Ecol (2002) 0.78
Chromosome 19p13.3 deletion in a patient with macrocephaly, obesity, mental retardation, and behavior problems. Am J Med Genet A (2011) 0.78
Interstitial 3p25 deletion in a patient with features of 3p deletion syndrome: further evidence for the role of SRGAP3 in mental retardation. Clin Dysmorphol (2014) 0.77
A fetus with de novo 2q33.2q35 deletion including MAP2 with brain anomalies, esophageal atresia, and laryngeal stenosis. Am J Med Genet A (2013) 0.77
Effect of age on the fatty acid composition of the Bacillus subtilis PO270 isolated from wheat rhizosphere. Pol J Microbiol (2004) 0.76
Exploring the parallel development of microbial systems in neonates with cystic fibrosis. MBio (2012) 0.75
Louping ill virus genome sequence derived from the spinal cord of an infected lamb. Genome Announc (2013) 0.75
Evaluation of a rapid lateral flow immunoassay for Staphylococcus aureus detection in respiratory samples. Diagn Microbiol Infect Dis (2012) 0.75
Calibration and deployment of custom-designed bioreporters for protecting biological remediation consortia from toxic shock. Environ Microbiol (2005) 0.75
Epidemiology and health policy imperatives for AIDS. N Engl J Public Policy (1989) 0.75
How can the cystic fibrosis respiratory microbiome influence our clinical decision-making? Curr Opin Pulm Med (2017) 0.75