Published in Genetics on June 15, 2010
Genome-wide patterns of divergence during speciation: the lake whitefish case study. Philos Trans R Soc Lond B Biol Sci (2012) 1.12
A comparison of gene transcription profiles of domesticated and wild Atlantic salmon (Salmo salar L.) at early life stages, reared under controlled conditions. BMC Genomics (2014) 0.96
Relative risks of inbreeding and outbreeding depression in the wild in endangered salmon. Evol Appl (2011) 0.89
Stocking impacts the expression of candidate genes and physiological condition in introgressed brook charr (Salvelinus fontinalis) populations. Evol Appl (2012) 0.87
Coding Gene SNP Mapping Reveals QTL Linked to Growth and Stress Response in Brook Charr (Salvelinus fontinalis). G3 (Bethesda) (2012) 0.84
Influence of developmental stage and genotype on liver mRNA levels among wild, domesticated, and hybrid rainbow trout (Oncorhynchus mykiss). BMC Genomics (2013) 0.84
The influence of parental effects on transcriptomic landscape during early development in brook charr (Salvelinus fontinalis, Mitchill). Heredity (Edinb) (2013) 0.82
Loss of genetic integrity in wild lake trout populations following stocking: insights from an exhaustive study of 72 lakes from Québec, Canada. Evol Appl (2014) 0.81
Linking transcriptomic and genomic variation to growth in brook charr hybrids (Salvelinus fontinalis, Mitchill). Heredity (Edinb) (2013) 0.80
Does density influence relative growth performance of farm, wild and F1 hybrid Atlantic salmon in semi-natural and hatchery common garden conditions? R Soc Open Sci (2016) 0.78
Global transcriptional and miRNA insights into bases of heterosis in hybridization of Cyprinidae. Sci Rep (2015) 0.77
Genetically based population divergence in overwintering energy mobilization in brook charr (Salvelinus fontinalis). Genetica (2013) 0.75
Hybridization between Yellowstone Cutthroat Trout and Rainbow Trout Alters the Expression of Muscle Growth-Related Genes and Their Relationships with Growth Patterns. PLoS One (2015) 0.75
Comparing the transcriptomes of embryos from domesticated and wild Atlantic salmon (Salmo salar L.) stocks and examining factors that influence heritability of gene expression. Genet Sel Evol (2016) 0.75
Strain specific genotype-environment interactions and evolutionary potential for body mass in brook charr (Salvelinus fontinalis). G3 (Bethesda) (2013) 0.75
Stocking activities for the Arctic charr in Lake Geneva: Genetic effects in space and time. Ecol Evol (2017) 0.75
Analysis of variance for gene expression microarray data. J Comput Biol (2000) 16.28
Assessing gene significance from cDNA microarray expression data via mixed models. J Comput Biol (2001) 10.38
The landscape of genetic complexity across 5,700 gene expression traits in yeast. Proc Natl Acad Sci U S A (2005) 9.66
Variation in gene expression within and among natural populations. Nat Genet (2002) 7.19
Transcriptional regulatory elements in the human genome. Annu Rev Genomics Hum Genet (2006) 7.18
Estimating genetic parameters in natural populations using the "animal model". Philos Trans R Soc Lond B Biol Sci (2004) 6.93
Improved statistical tests for differential gene expression by shrinking variance components estimates. Biostatistics (2005) 5.57
The role of hybridization in evolution. Mol Ecol (2001) 5.46
Transgressive segregation, adaptation and speciation. Heredity (Edinb) (1999) 5.18
The alluring simplicity and complex reality of genetic rescue. Trends Ecol Evol (2004) 4.71
Extensive sex-specific nonadditivity of gene expression in Drosophila melanogaster. Genetics (2004) 3.12
In search of the molecular basis of heterosis. Plant Cell (2003) 2.98
Heterosis: revisiting the magic. Trends Genet (2006) 2.91
Development and application of a salmonid EST database and cDNA microarray: data mining and interspecific hybridization characteristics. Genome Res (2004) 2.72
All possible modes of gene action are observed in a global comparison of gene expression in a maize F1 hybrid and its inbred parents. Proc Natl Acad Sci U S A (2006) 2.68
A novel measure of genetic distance for highly polymorphic tandem repeat loci. Mol Biol Evol (1995) 2.65
Genetic interactions between transcription factors cause natural variation in yeast. Science (2009) 2.62
Genetics and the fitness of hybrids. Annu Rev Genet (2001) 2.56
Neutral and adaptive variation in gene expression. Proc Natl Acad Sci U S A (2006) 2.37
Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression patterns in the F1 hybrid. Genetics (2006) 2.29
Nonadditive gene expression in diploid and triploid hybrids of maize. Genetics (2004) 2.14
The genetic architecture necessary for transgressive segregation is common in both natural and domesticated populations. Philos Trans R Soc Lond B Biol Sci (2003) 2.04
A genomic view of introgression and hybrid speciation. Curr Opin Genet Dev (2007) 2.03
Genome-wide patterns of expression in Drosophila pure species and hybrid males. Mol Biol Evol (2003) 1.86
Fish and chips: various methodologies demonstrate utility of a 16,006-gene salmonid microarray. BMC Genomics (2005) 1.75
Anomalies in the expression profile of interspecific hybrids of Drosophila melanogaster and Drosophila simulans. Genome Res (2004) 1.72
A salmonid EST genomic study: genes, duplications, phylogeny and microarrays. BMC Genomics (2008) 1.68
Segregating variation in the transcriptome: cis regulation and additivity of effects. Genetics (2006) 1.55
Life history shapes gene expression in salmonids. Curr Biol (2006) 1.55
Gene expression analyses in maize inbreds and hybrids with varying levels of heterosis. BMC Plant Biol (2008) 1.51
Rapid parallel evolutionary changes of gene transcription profiles in farmed Atlantic salmon. Mol Ecol (2006) 1.38
Genetic consequences of interbreeding between farmed and wild Atlantic salmon: insights from the transcriptome. Mol Ecol (2008) 1.32
Genetic distance between species predicts novel trait expression in their hybrids. Evolution (2008) 1.26
Transcriptomic analysis of growth heterosis in larval Pacific oysters (Crassostrea gigas). Proc Natl Acad Sci U S A (2007) 1.18
Population-specific gene expression responses to hybridization between farm and wild Atlantic salmon. Evol Appl (2009) 1.17
The rise and fall of isolation by distance in the anadromous brook charr (Salvelinus fontinalis Mitchill). Genetics (2003) 1.15
Epigenetic, transposon and small RNA determinants of hybrid dysfunctions. Heredity (Edinb) (2008) 1.15
Inheritance patterns of transcript levels in F1 hybrid mice. Genetics (2006) 1.15
Growth and survival trade-offs and outbreeding depression in rainbow trout (Oncorhynchus mykiss). Evolution (2007) 1.15
Gene expression divergence and hybrid misexpression between lake whitefish species pairs (Coregonus spp. Salmonidae). Mol Biol Evol (2009) 1.14
Genome clashes in hybrids: insights from gene expression. Heredity (Edinb) (2007) 1.12
Extensive additivity of gene expression differentiates subspecies of the house mouse. Genetics (2007) 1.10
Maternal genetic effects on adaptive divergence between anadromous and resident brook charr during early life history. J Evol Biol (2005) 1.10
When invaders meet locally adapted types: rapid moulding of hybrid zones between sculpins (Cottus, Pisces) in the Rhine system. Mol Ecol (2006) 1.05
Is ectopic expression caused by deregulatory mutations or due to gene-regulation leaks with evolutionary potential? Bioessays (2005) 0.95
Major disruption of gene expression in hybrids between young sympatric anadromous and resident populations of brook charr (Salvelinus fontinalis Mitchill). J Evol Biol (2009) 0.92
Fast transcriptional responses to domestication in the brook charr Salvelinus fontinalis. Genetics (2010) 0.91
Little qualitative RNA misexpression in sterile male F1 hybrids of Drosophila pseudoobscura and D. persimilis. BMC Evol Biol (2002) 0.90
Migratory charr schools exhibit population and kin associations beyond juvenile stages. Mol Ecol (2005) 0.90
Transcriptomic profiling of mature embryo from an elite super-hybrid rice LYP9 and its parental lines. BMC Plant Biol (2008) 0.88
Changes in the rates of glycogenesis, glycogenolysis, lipogenesis, and lipolysis in selected tissues of the coho salmon (Oncorhynchus kisutch) associated with parr-smolt transformation. J Exp Zool (1985) 0.83
Variation in genetic architecture of olfactory behaviour among wild-derived populations of Drosophila melanogaster. J Evol Biol (2008) 0.82
Oceanic spawning migration of the European eel (Anguilla anguilla). Science (2009) 2.55
Identifying Canadian freshwater fishes through DNA barcodes. PLoS One (2008) 2.49
Generic scan using AFLP markers as a means to assess the role of directional selection in the divergence of sympatric whitefish ecotypes. Mol Biol Evol (2004) 2.15
All roads lead to home: panmixia of European eel in the Sargasso Sea. Mol Ecol (2011) 2.03
AFLP utility for population assignment studies: analytical investigation and empirical comparison with microsatellites. Mol Ecol (2003) 1.91
Mining transcriptome sequences towards identifying adaptive single nucleotide polymorphisms in lake whitefish species pairs (Coregonus spp. Salmonidae). Mol Ecol (2010) 1.71
Natural hybrids in Atlantic eels (Anguilla anguilla, A. rostrata): evidence for successful reproduction and fluctuating abundance in space and time. Mol Ecol (2006) 1.66
Population genetics of the American eel (Anguilla rostrata): FST = 0 and North Atlantic Oscillation effects on demographic fluctuations of a panmictic species. Mol Ecol (2012) 1.59
Differential reproductive success and heritability of alternative reproductive tactics in wild Atlantic salmon (Salmo salar L.). Evolution (2003) 1.54
SNP-array reveals genome-wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar). Mol Ecol (2012) 1.51
Detecting genotypic changes associated with selective mortality at sea in Atlantic salmon: polygenic multilocus analysis surpasses genome scan. Mol Ecol (2014) 1.44
Comparative estimation of effective population sizes and temporal gene flow in two contrasting population systems. Mol Ecol (2007) 1.43
Genetic calibration of species diversity among North America's freshwater fishes. Proc Natl Acad Sci U S A (2011) 1.41
Evolutionary change in human-altered environments. Mol Ecol (2008) 1.40
Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered European eel. BMC Genomics (2010) 1.39
Rapid parallel evolutionary changes of gene transcription profiles in farmed Atlantic salmon. Mol Ecol (2006) 1.38
Clinal variation in MHC diversity with temperature: evidence for the role of host-pathogen interaction on local adaptation in Atlantic salmon. Evolution (2007) 1.34
Landscape genetics and hierarchical genetic structure in Atlantic salmon: the interaction of gene flow and local adaptation. Mol Ecol (2008) 1.34
Genetic consequences of interbreeding between farmed and wild Atlantic salmon: insights from the transcriptome. Mol Ecol (2008) 1.32
Framing the Salmonidae family phylogenetic portrait: a more complete picture from increased taxon sampling. PLoS One (2012) 1.21
Consequences of unequal population size, asymmetric gene flow and sex-biased dispersal on population structure in brook charr (Salvelinus fontinalis). Mol Ecol (2004) 1.21
Decline of North Atlantic eels: a fatal synergy? Proc Biol Sci (2003) 1.20
Adaptive divergence between freshwater and marine sticklebacks: insights into the role of phenotypic plasticity from an integrated analysis of candidate gene expression. Evolution (2009) 1.17
The rise and fall of isolation by distance in the anadromous brook charr (Salvelinus fontinalis Mitchill). Genetics (2003) 1.15
The genetic architecture of reproductive isolation during speciation-with-gene-flow in lake whitefish species pairs assessed by RAD sequencing. Evolution (2013) 1.15
High genetic diversity and no inbreeding in the endangered copper redhorse, Moxostoma hubbsi (Catostomidae, Pisces): the positive sides of a long generation time. Mol Ecol (2006) 1.12
MHC standing genetic variation and pathogen resistance in wild Atlantic salmon. Philos Trans R Soc Lond B Biol Sci (2009) 1.11
Adaptive migratory divergence among sympatric brook charr populations. Evolution (2005) 1.10
MHC adaptive divergence between closely related and sympatric African cichlids. PLoS One (2007) 1.10
Divergence in gene regulation at young life history stages of whitefish (Coregonus sp.) and the emergence of genomic isolation. BMC Evol Biol (2009) 1.08
The transcriptomics of sympatric dwarf and normal lake whitefish (Coregonus clupeaformis spp., Salmonidae) divergence as revealed by next-generation sequencing. Mol Ecol (2010) 1.08
Mapping phenotypic, expression and transmission ratio distortion QTL using RAD markers in the Lake Whitefish (Coregonus clupeaformis). Mol Ecol (2012) 1.08
Strong and consistent natural selection associated with armour reduction in sticklebacks. Mol Ecol (2011) 1.08
Divergent selection maintains adaptive differentiation despite high gene flow between sympatric rainbow smelt ecotypes (Osmerus mordax Mitchill). Mol Ecol (2003) 1.07
Genetically based phenotype-environment association for swimming behavior in lake whitefish ecotypes (Coregonus clupeaformis Mitchill). Evolution (2002) 1.06
A comparative mitogenomic analysis of the potential adaptive value of Arctic charr mtDNA introgression in brook charr populations (Salvelinus fontinalis Mitchill). Mol Biol Evol (2002) 1.06
Differences in transcription levels among wild, domesticated, and hybrid Atlantic salmon (Salmo salar) from two environments. Mol Ecol (2012) 1.05
RNA-seq analysis reveals extensive transcriptional plasticity to temperature stress in a freshwater fish species. BMC Genomics (2013) 1.04
Glacial cycles as an allopatric speciation pump in north-eastern American freshwater fishes. Mol Ecol (2012) 1.03
Reduced fitness of Atlantic salmon released in the wild after one generation of captive breeding. Evol Appl (2012) 1.03
DNA barcoding of Cuban freshwater fishes: evidence for cryptic species and taxonomic conflicts. Mol Ecol Resour (2009) 1.02
Mating patterns and determinants of individual reproductive success in brown trout (Salmo trutta) revealed by parentage analysis of an entire stream living population. Mol Ecol (2010) 1.01
The phenomics and expression quantitative trait locus mapping of brain transcriptomes regulating adaptive divergence in lake whitefish species pairs (Coregonus sp.). Genetics (2008) 1.01
The seabird paradox: dispersal, genetic structure and population dynamics in a highly mobile, but philopatric albatross species. Mol Ecol (2008) 1.00
The genetic consequences of spatially varying selection in the panmictic American eel (Anguilla rostrata). Genetics (2011) 1.00
Landscape genetic analyses reveal cryptic population structure and putative selection gradients in a large-scale estuarine environment. Mol Ecol (2008) 1.00
Mitogenome sequencing reveals shallow evolutionary histories and recent divergence time between morphologically and ecologically distinct European whitefish (Coregonus spp.). Mol Ecol (2012) 0.99
Genetic evidence for kin aggregation in the intertidal acorn barnacle (Semibalanus balanoides). Mol Ecol (2006) 0.97
Dynamics of introgressive hybridization assessed by SNP population genomics of coding genes in stocked brook charr (Salvelinus fontinalis). Mol Ecol (2012) 0.97
Population genomics of wild and laboratory zebrafish (Danio rerio). Mol Ecol (2011) 0.96
A road map for molecular ecology. Mol Ecol (2013) 0.95
Integrative use of spatial, genetic, and demographic analyses for investigating genetic connectivity between migratory, montane, and sedentary caribou herds. Mol Ecol (2007) 0.95
The landscape genetics of yellow perch (Perca flavescens) in a large fluvial ecosystem. Mol Ecol (2008) 0.95
Genome-wide survey of the gene expression response to saprolegniasis in Atlantic salmon. Mol Immunol (2006) 0.94
Gene coexpression networks reveal key drivers of phenotypic divergence in lake whitefish. Mol Biol Evol (2013) 0.94
Comparative genomics reveals adaptive protein evolution and a possible cytonuclear incompatibility between European and American Eels. Mol Biol Evol (2012) 0.94
Antagonistic effect of indigenous skin bacteria of brook charr (Salvelinus fontinalis) against Flavobacterium columnare and F. psychrophilum. Vet Microbiol (2011) 0.94
Combining next-generation sequencing and online databases for microsatellite development in non-model organisms. Sci Rep (2013) 0.93
Life history and demographic determinants of effective/census size ratios as exemplified by brown trout (Salmo trutta). Evol Appl (2012) 0.92
Major disruption of gene expression in hybrids between young sympatric anadromous and resident populations of brook charr (Salvelinus fontinalis Mitchill). J Evol Biol (2009) 0.92
Candidate genes and adaptive radiation: insights from transcriptional adaptation to the limnetic niche among coregonine fishes (Coregonus spp., Salmonidae). Mol Biol Evol (2008) 0.91
Fast transcriptional responses to domestication in the brook charr Salvelinus fontinalis. Genetics (2010) 0.91
Geographic variation of multiple paternity in the American lobster, Homarus americanus. Mol Ecol (2005) 0.91
Migratory charr schools exhibit population and kin associations beyond juvenile stages. Mol Ecol (2005) 0.90
Surviving with low genetic diversity: the case of albatrosses. Proc Biol Sci (2007) 0.90
Shifting patterns in genetic control at the embryo-alevin boundary in brook charr. Evolution (2004) 0.89
Coding Gene Single Nucleotide Polymorphism Mapping and Quantitative Trait Loci Detection for Physiological Reproductive Traits in Brook Charr, Salvelinus fontinalis. G3 (Bethesda) (2012) 0.89
Conservation genomics of anadromous Atlantic salmon across its North American range: outlier loci identify the same patterns of population structure as neutral loci. Mol Ecol (2014) 0.88
Probiotic treatment by indigenous bacteria decreases mortality without disturbing the natural microbiota of Salvelinus fontinalis. Can J Microbiol (2013) 0.88
Mate choice for major histocompatibility complex genetic divergence as a bet-hedging strategy in the Atlantic salmon (Salmo salar). Proc Biol Sci (2011) 0.88
RNA-seq reveals transcriptomic shock involving transposable elements reactivation in hybrids of young lake whitefish species. Mol Biol Evol (2014) 0.88
Parallel and nonparallel genome-wide divergence among replicate population pairs of freshwater and anadromous Atlantic salmon. Mol Ecol (2013) 0.88
Parallelism in the oxygen transport system of the lake whitefish: the role of physiological divergence in ecological speciation. Mol Ecol (2012) 0.88
The influence of gene-environment interactions on GHR and IGF-1 expression and their association with growth in brook charr, Salvelinus fontinalis (Mitchill). BMC Genet (2007) 0.87
Stocking impacts the expression of candidate genes and physiological condition in introgressed brook charr (Salvelinus fontinalis) populations. Evol Appl (2012) 0.87
Evolutionary ecotoxicology of wild yellow perch (Perca flavescens) populations chronically exposed to a polymetallic gradient. Aquat Toxicol (2007) 0.86
Landscape genomics in Atlantic salmon (Salmo salar): searching for gene-environment interactions driving local adaptation. Evolution (2013) 0.86
Tug of war between continental gene flow and rearing site philopatry in a migratory bird: the sex-biased dispersal paradigm reconsidered. Mol Ecol (2009) 0.86
What is needed for next-generation ecological and evolutionary genomics? Trends Ecol Evol (2012) 0.85
Does catch and release affect the mating system and individual reproductive success of wild Atlantic salmon (Salmo salar L.)? Mol Ecol (2012) 0.84
Temperature and length-dependent modulation of the MH class II beta gene expression in brook charr (Salvelinus fontinalis) by a cis-acting minisatellite. Mol Immunol (2010) 0.84
Effects of chronic metal exposure on wild fish populations revealed by high-throughput cDNA sequencing. Ecotoxicology (2011) 0.84
Targeted sequence capture and resequencing implies a predominant role of regulatory regions in the divergence of a sympatric lake whitefish species pair (Coregonus clupeaformis). Mol Ecol (2013) 0.84
Coding Gene SNP Mapping Reveals QTL Linked to Growth and Stress Response in Brook Charr (Salvelinus fontinalis). G3 (Bethesda) (2012) 0.84
Nonparallelism in MHCIIβ diversity accompanies nonparallelism in pathogen infection of lake whitefish (Coregonus clupeaformis) species pairs as revealed by next-generation sequencing. Mol Ecol (2013) 0.84
Alternative life histories in the Atlantic salmon: genetic covariances within the sneaker sexual tactic in males. Proc Biol Sci (2010) 0.83
Local heterozygosity-fitness correlations with global positive effects on fitness in threespine stickleback. Evolution (2006) 0.83
Genomic footprints of speciation in Atlantic eels (Anguilla anguilla and A. rostrata). Mol Ecol (2014) 0.82
Negative density-dependent dispersal in the American black bear (Ursus americanus) revealed by noninvasive sampling and genotyping. Ecol Evol (2012) 0.82
Molecular phylogeny and phylogeography of the Cuban cave-fishes of the genus Lucifuga: evidence for cryptic allopatric diversity. Mol Phylogenet Evol (2011) 0.82
A fast, highly sensitive double-nested PCR-based method to screen fish immunobiomes. Mol Ecol Resour (2012) 0.82
Metabolic rate and climatic fluctuations shape continental wide pattern of genetic divergence and biodiversity in fishes. PLoS One (2013) 0.81
Nonlinear effects of female mate choice in wild threespine sticklebacks. Evolution (2004) 0.81
Identification of MHC class IIbeta resistance/susceptibility alleles to Aeromonas salmonicida in brook charr (Salvelinus fontinalis). Mol Immunol (2008) 0.81