Published in BMC Evol Biol on June 22, 2010
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A fungal phylogeny based on 82 complete genomes using the composition vector method. BMC Evol Biol (2009) 1.61
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Evidence of host-virus co-evolution in tetranucleotide usage patterns of bacteriophages and eukaryotic viruses. BMC Genomics (2006) 1.51
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Baculovirus phylogeny and evolution. Curr Drug Targets (2007) 1.01
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Genomic and phylogenetic analyses of an adenovirus isolated from a corn snake (Elaphe guttata) imply a common origin with members of the proposed new genus Atadenovirus. J Gen Virol (2002) 0.98
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Whole genome analysis of the Epiphyas postvittana nucleopolyhedrovirus. J Gen Virol (2002) 0.97
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Ribosomal RNA as molecular barcodes: a simple correlation analysis without sequence alignment. Bioinformatics (2006) 0.96
A whole genome perspective on the phylogeny of the plant virus family Tombusviridae. Arch Virol (2004) 0.88
Complete genome viral phylogenies suggests the concerted evolution of regulatory cores and accessory satellites. PLoS One (2008) 0.84
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Short regions of sequence identity between the genomes of human and rodent parvoviruses and their respective hosts occur within host genes for the cytoskeleton, cell adhesion and Wnt signalling. J Gen Virol (2006) 0.83
Proper distance metrics for phylogenetic analysis using complete genomes without sequence alignment. Int J Mol Sci (2010) 0.81
Evolutionary history of true crabs (Crustacea: Decapoda: Brachyura) and the origin of freshwater crabs. Mol Biol Evol (2014) 1.61
Composition and genetic diversity of picoeukaryotes in subtropical coastal waters as revealed by 454 pyrosequencing. ISME J (2010) 1.38
Origin and phylogeny of chloroplasts revealed by a simple correlation analysis of complete genomes. Mol Biol Evol (2003) 1.27
Rapid DNA barcoding analysis of large datasets using the composition vector method. BMC Bioinformatics (2009) 1.15
Multifractal and correlation analyses of protein sequences from complete genomes. Phys Rev E Stat Nonlin Soft Matter Phys (2003) 1.12
Phylogenetic relationships among genera of the Periclimenes complex (Crustacea: Decapoda: Pontoniinae) based on mitochondrial and nuclear DNA. Mol Phylogenet Evol (2013) 1.11
Host-associated speciation in the coral barnacle Wanella milleporae (Cirripedia: Pyrgomatidae) inhabiting the Millepora coral. Mol Ecol (2009) 1.04
Phylogeography of the mitten crab Eriocheir sensu stricto in East Asia: Pleistocene isolation, population expansion and secondary contact. Mol Phylogenet Evol (2009) 1.01
Phylogeography of the marine macroalga Sargassum hemiphyllum (Phaeophyceae, Heterokontophyta) in northwestern Pacific. Mol Ecol (2010) 0.98
Chaos game representation of protein sequences based on the detailed HP model and their multifractal and correlation analyses. J Theor Biol (2004) 0.97
Prediction of protein structural classes by recurrence quantification analysis based on chaos game representation. J Theor Biol (2009) 0.92
Hermit to king, or hermit to all: multiple transitions to crab-like forms from hermit crab ancestors. Syst Biol (2011) 0.88
A fractal method to distinguish coding and non-coding sequences in a complete genome based on a number sequence representation. J Theor Biol (2005) 0.88
An ensemble method for predicting subnuclear localizations from primary protein structures. PLoS One (2013) 0.87
Characterization of heat shock protein 90 in the shrimp Metapenaeus ensis: Evidence for its role in the regulation of vitellogenin synthesis. Mol Reprod Dev (2008) 0.87
Human Pol II promoter recognition based on primary sequences and free energy of dinucleotides. BMC Bioinformatics (2008) 0.87
Genetic differentiation, hybridization and adaptive divergence in two subspecies of the acorn barnacle Tetraclita japonica in the northwestern Pacific. Mol Ecol (2008) 0.85
First study on gene expression of cement proteins and potential adhesion-related genes of a membranous-based barnacle as revealed from Next-Generation Sequencing technology. Biofouling (2013) 0.84
Evolution and phylogeny of the mud shrimps (Crustacea: Decapoda) revealed from complete mitochondrial genomes. BMC Genomics (2012) 0.83
De novo transcriptome sequencing of the snail Echinolittorina malaccana: identification of genes responsive to thermal stress and development of genetic markers for population studies. Mar Biotechnol (NY) (2014) 0.82
Proper distance metrics for phylogenetic analysis using complete genomes without sequence alignment. Int J Mol Sci (2010) 0.81
Induction of shrimp tropomyosin-specific hypersensitivity in mice. Int Arch Allergy Immunol (2008) 0.81
Correlations between designability and various structural characteristics of protein lattice models. J Chem Phys (2007) 0.81
Molecular coordinated regulation of gene expression during ovarian development in the penaeid shrimp. Mar Biotechnol (NY) (2007) 0.81
Differential gene expression in hepatopancreas of the shrimp Metapenaeus ensis during ovarian maturation. Mar Biotechnol (NY) (2007) 0.80
Genome scan of the mitten crab Eriocheir sensu stricto in East Asia: population differentiation, hybridization and adaptive speciation. Mol Phylogenet Evol (2012) 0.80
Composition vector method based on maximum entropy principle for sequence comparison. IEEE/ACM Trans Comput Biol Bioinform (2011) 0.80
Using knowledge fusion to analyze avian influenza H5N1 in East and Southeast Asia. PLoS One (2012) 0.80
Host-specific phenotypic plasticity of the turtle barnacle Chelonibia testudinaria: a widespread generalist rather than a specialist. PLoS One (2013) 0.79
Inhibitory effects of the androgenic gland on ovarian development in the mud crab Scylla paramamosain. Comp Biochem Physiol A Mol Integr Physiol (2005) 0.79
Lack of genetic differentiation in the shrimp Penaeus chinensis in the Northwestern Pacific. Biochem Genet (2007) 0.78
cDNA cloning and mRNA expression of retinoid-X-receptor in the ovary of the shrimp Metapenaeus ensis. Mol Biol Rep (2013) 0.78
VIP Barcoding: composition vector-based software for rapid species identification based on DNA barcoding. Mol Ecol Resour (2014) 0.78
Origin and diversification of the clawed lobster genus Metanephrops (Crustacea: Decapoda: Nephropidae). Mol Phylogenet Evol (2008) 0.78
Complete mitogenome of the deep-sea hydrothermal vent shrimp Alvinocaris chelys Komai and Chan, 2010 (Decapoda: Caridea: Alvinocarididae). Mitochondrial DNA (2012) 0.78
Fuzzy C-means method with empirical mode decomposition for clustering microarray data. Int J Data Min Bioinform (2013) 0.77
Species delineation in Pampus (Perciformes) and the phylogenetic status of the Stromateoidei based on mitogenomics. Mol Biol Rep (2010) 0.77
Gastrointestinal Immune Response to the Shrimp Allergen Tropomyosin: Histological and Immunological Analysis in an Animal Model of Shrimp Tropomyosin Hypersensitivity. Int Arch Allergy Immunol (2015) 0.77
Current immunological and molecular biological perspectives on seafood allergy: a comprehensive review. Clin Rev Allergy Immunol (2014) 0.77
Genetic and morphological differentiation of the Indo-West Pacific intertidal barnacle Chthamalus malayensis. Integr Comp Biol (2012) 0.77
Zoogeography of intertidal communities in the West Indian Ocean as determined by ocean circulation systems: patterns from the Tetraclita barnacles. PLoS One (2012) 0.76
Origin and evolution of yolk proteins: expansion and functional diversification of large lipid transfer protein superfamily. Biol Reprod (2013) 0.76
Characterization of an ovary-specific glutathione peroxidase from the shrimp Metapenaeus ensis and its role in crustacean reproduction. Comp Biochem Physiol B Biochem Mol Biol (2009) 0.76
Comparative proteomic profiling during ovarian development of the shrimp Metapenaeus ensis. Mol Biol Rep (2013) 0.76
Analyzing multi-locus plant barcoding datasets with a composition vector method based on adjustable weighted distance. PLoS One (2012) 0.75
Low-Dose Allergen-Specific Immunotherapy Induces Tolerance in a Murine Model of Shrimp Allergy. Int Arch Allergy Immunol (2017) 0.75
The first mitochondrial genome from Mysida (Crustacea: Malacostraca) reveals an unusual gene arrangement. Mitochondrial DNA (2013) 0.75