Published in Appl Environ Microbiol on July 23, 2010
Intracontinental spread of human invasive Salmonella Typhimurium pathovariants in sub-Saharan Africa. Nat Genet (2012) 2.86
Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss. BMC Genomics (2010) 1.48
"Epidemic clones" of Listeria monocytogenes are widespread and ancient clonal groups. J Clin Microbiol (2013) 1.28
Reproductive clonality of pathogens: a perspective on pathogenic viruses, bacteria, fungi, and parasitic protozoa. Proc Natl Acad Sci U S A (2012) 1.26
Landscape and meteorological factors affecting prevalence of three food-borne pathogens in fruit and vegetable farms. Appl Environ Microbiol (2012) 1.23
Risk factors associated with Salmonella and Listeria monocytogenes contamination of produce fields. Appl Environ Microbiol (2013) 1.00
Diversity of Listeria species in urban and natural environments. Appl Environ Microbiol (2012) 0.99
FSL J1-208, a virulent uncommon phylogenetic lineage IV Listeria monocytogenes strain with a small chromosome size and a putative virulence plasmid carrying internalin-like genes. Appl Environ Microbiol (2012) 0.95
Evolutionary dynamics of the accessory genome of Listeria monocytogenes. PLoS One (2013) 0.94
Stress survival islet 1 (SSI-1) survey in Listeria monocytogenes reveals an insert common to listeria innocua in sequence type 121 L. monocytogenes strains. Appl Environ Microbiol (2011) 0.84
Atypical Listeria innocua strains possess an intact LIPI-3. BMC Microbiol (2014) 0.83
Characteristics and distribution of Listeria spp., including Listeria species newly described since 2009. Appl Microbiol Biotechnol (2016) 0.83
Recombination and positive selection contributed to the evolution of Listeria monocytogenes lineages III and IV, two distinct and well supported uncommon L. monocytogenes lineages. Infect Genet Evol (2011) 0.83
Spatial and Temporal Factors Associated with an Increased Prevalence of Listeria monocytogenes in Spinach Fields in New York State. Appl Environ Microbiol (2015) 0.81
Establishment of a simple and rapid identification method for Listeria spp. by using high-resolution melting analysis, and its application in food industry. PLoS One (2014) 0.79
Comparative Genomics of Listeria Sensu Lato: Genus-Wide Differences in Evolutionary Dynamics and the Progressive Gain of Complex, Potentially Pathogenicity-Related Traits through Lateral Gene Transfer. Genome Biol Evol (2015) 0.78
Novel PCR Assays Complement Laser Biosensor-Based Method and Facilitate Listeria Species Detection from Food. Sensors (Basel) (2015) 0.75
Validation of a Previously Developed Geospatial Model That Predicts the Prevalence of Listeria monocytogenes in New York State Produce Fields. Appl Environ Microbiol (2015) 0.75
Genetic stability and evolution of sigB allele used for Listeria sensu stricto subtyping and phylogenetic inference. Appl Environ Microbiol (2017) 0.75
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol (2003) 102.57
MODELTEST: testing the model of DNA substitution. Bioinformatics (1998) 101.19
BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol (2007) 74.13
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics (1989) 73.50
Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics (2003) 53.11
PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol (2007) 45.68
Relaxed phylogenetics and dating with confidence. PLoS Biol (2006) 37.68
DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics (2003) 32.63
How clonal are bacteria? Proc Natl Acad Sci U S A (1993) 18.19
Comparative genomics of Listeria species. Science (2001) 12.94
Analyzing the mosaic structure of genes. J Mol Evol (1992) 10.99
Listeria pathogenesis and molecular virulence determinants. Clin Microbiol Rev (2001) 10.41
Pathogenicity islands of virulent bacteria: structure, function and impact on microbial evolution. Mol Microbiol (1997) 9.50
Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Mol Biol Evol (2005) 8.74
Properties of statistical tests of neutrality for DNA polymorphism data. Genetics (1995) 7.62
Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proc Natl Acad Sci U S A (2001) 6.72
A simple and robust statistical test for detecting the presence of recombination. Genetics (2006) 6.71
Microevolution and history of the plague bacillus, Yersinia pestis. Proc Natl Acad Sci U S A (2004) 5.04
Evolutionary history of Salmonella typhi. Science (2006) 5.00
Genetic characterization of clones of the bacterium Listeria monocytogenes causing epidemic disease. Proc Natl Acad Sci U S A (1989) 5.00
Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species. Nucleic Acids Res (2004) 4.97
Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites. Genetics (2004) 4.22
Evolution, population structure, and phylogeography of genetically monomorphic bacterial pathogens. Annu Rev Microbiol (2008) 4.14
A new perspective on Listeria monocytogenes evolution. PLoS Pathog (2008) 3.85
Statistical tests of selective neutrality in the age of genomics. Heredity (Edinb) (2001) 3.64
A program for calculating and displaying compatibility matrices as an aid in determining reticulate evolution in molecular sequences. Comput Appl Biosci (1996) 3.11
Detection and identification of Listeria monocytogenes in cooked sausage products and in milk by in vitro amplification of haemolysin gene fragments. J Appl Bacteriol (1991) 2.96
Separation of pathogenic from apathogenic Listeria monocytogenes by three in vitro reactions. J Clin Microbiol (1977) 2.95
Listeria monocytogenes exists in at least three evolutionary lines: evidence from flagellin, invasive associated protein and listeriolysin O genes. Microbiology (1995) 2.55
Comparative genetic characterization of Listeria monocytogenes isolates from human and animal listeriosis cases. Microbiology (2001) 2.11
Intraspecific phylogeny and lineage group identification based on the prfA virulence gene cluster of Listeria monocytogenes. J Bacteriol (2004) 2.00
PriFi: using a multiple alignment of related sequences to find primers for amplification of homologs. Nucleic Acids Res (2005) 1.96
Internalins: a complex family of leucine-rich repeat-containing proteins in Listeria monocytogenes. Microbes Infect (2007) 1.81
Evolution and molecular phylogeny of Listeria monocytogenes isolated from human and animal listeriosis cases and foods. J Bacteriol (2005) 1.80
Listeria monocytogenes isolates from foods and humans form distinct but overlapping populations. Appl Environ Microbiol (2004) 1.73
The homologous and heterologous regions within the iap gene allow genus- and species-specific identification of Listeria spp. by polymerase chain reaction. Appl Environ Microbiol (1992) 1.72
When does a clone deserve a name? A perspective on bacterial species based on population genetics. Trends Microbiol (2001) 1.71
Pathogenicity islands and virulence evolution in Listeria. Microbes Infect (2001) 1.71
Genetic diversity and population structure of Escherichia coli isolated from freshwater beaches. Environ Microbiol (2007) 1.69
Evolution of pathogenicity in the Bacillus cereus group. Syst Appl Microbiol (2009) 1.52
Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes. J Bacteriol (2006) 1.48
Listeria marthii sp. nov., isolated from the natural environment, Finger Lakes National Forest. Int J Syst Evol Microbiol (2009) 1.41
Genome-wide analyses reveal lineage specific contributions of positive selection and recombination to the evolution of Listeria monocytogenes. BMC Evol Biol (2008) 1.41
Taxonomy of the genus Listeria by using multilocus enzyme electrophoresis. Int J Syst Bacteriol (1991) 1.38
Genetic and phenotypic characterization of Listeria monocytogenes lineage III. Microbiology (2006) 1.36
The bacterial virulence factor InlC perturbs apical cell junctions and promotes cell-to-cell spread of Listeria. Nat Cell Biol (2009) 1.36
Lineage specific recombination rates and microevolution in Listeria monocytogenes. BMC Evol Biol (2008) 1.30
Multilocus genotyping assays for single nucleotide polymorphism-based subtyping of Listeria monocytogenes isolates. Appl Environ Microbiol (2008) 1.29
Limited boundaries for extensive horizontal gene transfer among Salmonella pathogens. Proc Natl Acad Sci U S A (2003) 1.26
Evolutionary history of the genus Listeria and its virulence genes. Syst Appl Microbiol (2005) 1.25
Listeria ivanovii infection. J Infect (1994) 1.15
Natural atypical Listeria innocua strains with Listeria monocytogenes pathogenicity island 1 genes. Appl Environ Microbiol (2004) 1.09
A spontaneous genomic deletion in Listeria ivanovii identifies LIPI-2, a species-specific pathogenicity island encoding sphingomyelinase and numerous internalins. Mol Microbiol (2006) 1.09
Comparative and functional genomics of Listeria spp. J Biotechnol (2006) 1.08
The identification of Listeria species. Int J Food Microbiol (1997) 1.08
Molecular characterization of Listeria monocytogenes from natural and urban environments. J Food Prot (2006) 1.07
Spatial and temporal heterogeneity in nucleotide sequence evolution. Mol Biol Evol (2008) 1.04
The presence of the internalin gene in natural atypically hemolytic Listeria innocua strains suggests descent from L. monocytogenes. Appl Environ Microbiol (2007) 0.99
Characterisation of Listeria ivanovii isolates from the UK using pulsed-field gel electrophoresis. FEMS Microbiol Lett (1999) 0.90
Combined sigB allelic typing and multiplex PCR provide improved discriminatory power and reliability for Listeria monocytogenes molecular serotyping. J Microbiol Methods (2006) 0.87
Discovery of natural atypical nonhemolytic Listeria seeligeri isolates. Appl Environ Microbiol (2006) 0.86
Characterization of the prfA virulence gene cluster insertion site in non-hemolytic Listeria spp.: probing the evolution of the Listeria virulence gene island. Curr Microbiol (2001) 0.86
Contributions of six lineage-specific internalin-like genes to invasion efficiency of Listeria monocytogenes. Foodborne Pathog Dis (2009) 0.80
Listeria seeligeri isolates from food processing environments form two phylogenetic lineages. Appl Environ Microbiol (2010) 0.77
Oncogenic Ras and Akt signaling contribute to glioblastoma formation by differential recruitment of existing mRNAs to polysomes. Mol Cell (2003) 3.68
The organizing principle in the formation of the T cell receptor-CD3 complex. Cell (2002) 2.74
Listeria monocytogenes sigma B regulates stress response and virulence functions. J Bacteriol (2003) 2.70
Hormonally regulated alpha(4)beta(2)delta GABA(A) receptors are a target for alcohol. Nat Neurosci (2002) 2.62
Listeria monocytogenes lineages: Genomics, evolution, ecology, and phenotypic characteristics. Int J Med Microbiol (2010) 2.42
Alternative sigma factors and their roles in bacterial virulence. Microbiol Mol Biol Rev (2005) 2.15
Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs. BMC Genomics (2009) 1.99
Emergence, distribution, and molecular and phenotypic characteristics of Salmonella enterica serotype 4,5,12:i:-. Foodborne Pathog Dis (2009) 1.81
sigmaB-dependent gene induction and expression in Listeria monocytogenes during osmotic and acid stress conditions simulating the intestinal environment. Microbiology (2004) 1.75
Short-term genome evolution of Listeria monocytogenes in a non-controlled environment. BMC Genomics (2008) 1.74
Listeria monocytogenes isolates from foods and humans form distinct but overlapping populations. Appl Environ Microbiol (2004) 1.73
Sigma B contributes to PrfA-mediated virulence in Listeria monocytogenes. Infect Immun (2002) 1.66
Genome sequencing reveals diversification of virulence factor content and possible host adaptation in distinct subpopulations of Salmonella enterica. BMC Genomics (2011) 1.64
Multistate outbreak of Listeria monocytogenes infection linked to delicatessen turkey meat. Clin Infect Dis (2005) 1.55
Comparative analysis of the sigma B-dependent stress responses in Listeria monocytogenes and Listeria innocua strains exposed to selected stress conditions. Appl Environ Microbiol (2007) 1.54
Genome diversification in phylogenetic lineages I and II of Listeria monocytogenes: identification of segments unique to lineage II populations. J Bacteriol (2003) 1.53
Animal contact as a source of human non-typhoidal salmonellosis. Vet Res (2011) 1.52
Rational design of DNA sequence-based strategies for subtyping Listeria monocytogenes. J Clin Microbiol (2002) 1.51
Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss. BMC Genomics (2010) 1.48
The in vivo function of the ribosome-associated Hsp70, Ssz1, does not require its putative peptide-binding domain. Proc Natl Acad Sci U S A (2002) 1.48
Exploration of the role of the non-coding RNA SbrE in L. monocytogenes stress response. Int J Mol Sci (2012) 1.45
DNA sequence-based subtyping and evolutionary analysis of selected Salmonella enterica serotypes. J Clin Microbiol (2005) 1.44
Listeria marthii sp. nov., isolated from the natural environment, Finger Lakes National Forest. Int J Syst Evol Microbiol (2009) 1.41
Caspase-3 has a nonapoptotic function in erythroid maturation. Blood (2004) 1.41
Genome-wide analyses reveal lineage specific contributions of positive selection and recombination to the evolution of Listeria monocytogenes. BMC Evol Biol (2008) 1.41
Rapid whole-genome sequencing for surveillance of Salmonella enterica serovar enteritidis. Emerg Infect Dis (2014) 1.41
The mtDNA T8993G (NARP) mutation results in an impairment of oxidative phosphorylation that can be improved by antioxidants. Hum Mol Genet (2004) 1.40
Modulation of stress and virulence in Listeria monocytogenes. Trends Microbiol (2008) 1.38
Genetic and phenotypic characterization of Listeria monocytogenes lineage III. Microbiology (2006) 1.36
Molecular subtyping to detect human listeriosis clusters. Emerg Infect Dis (2003) 1.34
Multilocus sequence typing of Listeria monocytogenes by use of hypervariable genes reveals clonal and recombination histories of three lineages. Appl Environ Microbiol (2004) 1.31
Lineage specific recombination rates and microevolution in Listeria monocytogenes. BMC Evol Biol (2008) 1.30
Microarray-based characterization of the Listeria monocytogenes cold regulon in log- and stationary-phase cells. Appl Environ Microbiol (2007) 1.30
A whole-genome single nucleotide polymorphism-based approach to trace and identify outbreaks linked to a common Salmonella enterica subsp. enterica serovar Montevideo pulsed-field gel electrophoresis type. Appl Environ Microbiol (2011) 1.29
Genome wide evolutionary analyses reveal serotype specific patterns of positive selection in selected Salmonella serotypes. BMC Evol Biol (2009) 1.26
Genomic characterization provides new insight into Salmonella phage diversity. BMC Genomics (2013) 1.25
Role of sigmaB in regulating the compatible solute uptake systems of Listeria monocytogenes: osmotic induction of opuC is sigmaB dependent. Appl Environ Microbiol (2003) 1.25
Landscape and meteorological factors affecting prevalence of three food-borne pathogens in fruit and vegetable farms. Appl Environ Microbiol (2012) 1.23
Exposure to salt and organic acids increases the ability of Listeria monocytogenes to invade Caco-2 cells but decreases its ability to survive gastric stress. Appl Environ Microbiol (2006) 1.21
Multilocus sequence typing of outbreak-associated Listeria monocytogenes isolates to identify epidemic clones. Foodborne Pathog Dis (2010) 1.20
Evaluation of "Helicobacter heilmannii" subtypes in the gastric mucosas of cats and dogs. J Clin Microbiol (2004) 1.18
The Listeria monocytogenes prfAP2 promoter is regulated by sigma B in a growth phase dependent manner. FEMS Microbiol Lett (2005) 1.17
Contributions of Listeria monocytogenes sigmaB and PrfA to expression of virulence and stress response genes during extra- and intracellular growth. Microbiology (2006) 1.16
Interaction of the eukaryotic elongation factor 1A with newly synthesized polypeptides. J Biol Chem (2002) 1.16
International Life Sciences Institute North America Listeria monocytogenes strain collection: development of standard Listeria monocytogenes strain sets for research and validation studies. J Food Prot (2006) 1.15
Listeria monocytogenes sigmaB modulates PrfA-mediated virulence factor expression. Infect Immun (2009) 1.14
Physiology and genetics of Listeria monocytogenes survival and growth at cold temperatures. Crit Rev Food Sci Nutr (2009) 1.13
Growth and stress resistance variation in culture broth among Listeria monocytogenes strains of various serotypes and origins. J Food Prot (2006) 1.12
Sigma(B)-dependent expression patterns of compatible solute transporter genes opuCA and lmo1421 and the conjugated bile salt hydrolase gene bsh in Listeria monocytogenes. Microbiology (2003) 1.12
Transcriptomic and phenotypic analyses identify coregulated, overlapping regulons among PrfA, CtsR, HrcA, and the alternative sigma factors sigmaB, sigmaC, sigmaH, and sigmaL in Listeria monocytogenes. Appl Environ Microbiol (2010) 1.11
Molecular subtyping and characterization of bovine and human Streptococcus agalactiae isolates. J Clin Microbiol (2005) 1.09
Comparative genomic analysis of the sigB operon in Listeria monocytogenes and in other Gram-positive bacteria. Curr Microbiol (2004) 1.09
The alternative sigma factor sigma B and the virulence gene regulator PrfA both regulate transcription of Listeria monocytogenes internalins. Appl Environ Microbiol (2007) 1.09
Multilocus sequence typing of Streptococcus uberis provides sensitive and epidemiologically relevant subtype information and reveals positive selection in the virulence gene pauA. J Clin Microbiol (2005) 1.09
Phenotypic and transcriptomic analyses demonstrate interactions between the transcriptional regulators CtsR and Sigma B in Listeria monocytogenes. Appl Environ Microbiol (2007) 1.08
Transcriptomic and phenotypic analyses suggest a network between the transcriptional regulators HrcA and sigmaB in Listeria monocytogenes. Appl Environ Microbiol (2007) 1.08
Molecular characterization of Listeria monocytogenes from natural and urban environments. J Food Prot (2006) 1.07
Listeria monocytogenes subgroups IIIA, IIIB, and IIIC delineate genetically distinct populations with varied pathogenic potential. J Clin Microbiol (2006) 1.07
Temperature-dependent expression of Listeria monocytogenes internalin and internalin-like genes suggests functional diversity of these proteins among the listeriae. Appl Environ Microbiol (2007) 1.05
Molecular and phenotypic characterization of Listeria monocytogenes from U.S. Department of Agriculture Food Safety and Inspection Service surveillance of ready-to-eat foods and processing facilities. J Food Prot (2010) 1.03
Salmonella enterica serotype Cerro among dairy cattle in New York: an emerging pathogen? Foodborne Pathog Dis (2010) 1.03
Comparison of typing methods with a new procedure based on sequence characterization for Salmonella serovar prediction. J Clin Microbiol (2013) 1.02
Tracking of Listeria monocytogenes in smoked fish processing plants. J Food Prot (2004) 1.02
Molecular epidemiology and cluster analysis of human listeriosis cases in three U.S. states. J Food Prot (2006) 1.01
Multilocus variable-number tandem-repeat method for typing Salmonella enterica serovar Newport. J Clin Microbiol (2009) 1.01
Antimicrobial resistance in nontyphoidal Salmonella. J Food Prot (2007) 1.01
Distribution of Listeria monocytogenes molecular subtypes among human and food isolates from New York State shows persistence of human disease--associated Listeria monocytogenes strains in retail environments. J Food Prot (2004) 1.01
Longitudinal studies on Listeria in smoked fish plants: impact of intervention strategies on contamination patterns. J Food Prot (2004) 1.00
SigmaB-dependent and sigmaB-independent mechanisms contribute to transcription of Listeria monocytogenes cold stress genes during cold shock and cold growth. Appl Environ Microbiol (2007) 1.00
Homopolymeric tracts represent a general regulatory mechanism in prokaryotes. BMC Genomics (2010) 1.00
Risk factors associated with Salmonella and Listeria monocytogenes contamination of produce fields. Appl Environ Microbiol (2013) 1.00
Pulsed-field gel electrophoresis (PFGE) analysis of temporally matched Listeria monocytogenes isolates from human clinical cases, foods, ruminant farms, and urban and natural environments reveals source-associated as well as widely distributed PFGE types. J Clin Microbiol (2007) 1.00
A small RNA controls expression of the chitinase ChiA in Listeria monocytogenes. PLoS One (2011) 1.00
Diversity of Listeria species in urban and natural environments. Appl Environ Microbiol (2012) 0.99
Contributions of two-component regulatory systems, alternative sigma factors, and negative regulators to Listeria monocytogenes cold adaptation and cold growth. J Food Prot (2008) 0.98
Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages. Emerg Infect Dis (2014) 0.98
Attributing risk to Listeria monocytogenes subgroups: dose response in relation to genetic lineages. J Food Prot (2006) 0.97
Polypeptide-binding proteins mediate completion of co-translational protein translocation into the mammalian endoplasmic reticulum. EMBO Rep (2003) 0.97
A proposed new bacteriophage subfamily: "Jerseyvirinae". Arch Virol (2015) 0.97
Listeria monocytogenes in multiple habitats and host populations: review of available data for mathematical modeling. Foodborne Pathog Dis (2006) 0.97
Comparative genomic and morphological analyses of Listeria phages isolated from farm environments. Appl Environ Microbiol (2014) 0.96
Silage collected from dairy farms harbors an abundance of listeriaphages with considerable host range and genome size diversity. Appl Environ Microbiol (2012) 0.96
Development of a multilocus variable-number of tandem repeat typing method for Listeria monocytogenes serotype 4b strains. Int J Food Microbiol (2008) 0.96