Published in Microb Ecol on August 24, 2010
Microbiome diversity in the bronchial tracts of patients with chronic obstructive pulmonary disease. J Clin Microbiol (2012) 1.61
Molecular analysis of the luminal- and mucosal-associated intestinal microbiota in diarrhea-predominant irritable bowel syndrome. Am J Physiol Gastrointest Liver Physiol (2011) 1.49
Pyrosequencing-based analysis of the mucosal microbiota in healthy individuals reveals ubiquitous bacterial groups and micro-heterogeneity. PLoS One (2011) 1.38
The active human gut microbiota differs from the total microbiota. PLoS One (2011) 1.30
Brain-gut microbiome interactions and functional bowel disorders. Gastroenterology (2014) 1.22
Alterations in the colonic microbiota in response to osmotic diarrhea. PLoS One (2013) 1.16
Abrupt temporal fluctuations in the chicken fecal microbiota are explained by its gastrointestinal origin. Appl Environ Microbiol (2012) 1.14
Altered metabolism of gut microbiota contributes to chronic immune activation in HIV-infected individuals. Mucosal Immunol (2014) 1.13
Host-microbe relationships in inflammatory bowel disease detected by bacterial and metaproteomic analysis of the mucosal-luminal interface. Inflamm Bowel Dis (2011) 0.97
Characterisation of the faecal bacterial community in adult and elderly horses fed a high fibre, high oil or high starch diet using 454 pyrosequencing. PLoS One (2014) 0.96
Induction of bacterial antigen-specific colitis by a simplified human microbiota consortium in gnotobiotic interleukin-10-/- mice. Infect Immun (2014) 0.88
Comparison of bacterial quantities in left and right colon biopsies and faeces. World J Gastroenterol (2012) 0.87
Differences in microbial signatures between rectal mucosal biopsies and rectal swabs. Gut Microbes (2012) 0.84
The enterocyte-associated intestinal microbiota of breast-fed infants and adults responds differently to a TNF-α-mediated pro-inflammatory stimulus. PLoS One (2013) 0.84
Causes, consequences, and perspectives in the variations of intestinal density of colonization of multidrug-resistant enterobacteria. Front Microbiol (2013) 0.83
Shedding light on the microbial community of the macropod foregut using 454-amplicon pyrosequencing. PLoS One (2013) 0.81
16S rRNA gene pyrosequencing reveals shift in patient faecal microbiota during high-dose chemotherapy as conditioning regimen for bone marrow transplantation. Microb Ecol (2014) 0.80
High abundance of Escherichia during the establishment of fecal microbiota in Brazilian children. Microb Ecol (2014) 0.79
The gut microbiome and HIV-1 pathogenesis: a two-way street. AIDS (2016) 0.78
Spatial heterogeneity of gut microbiota reveals multiple bacterial communities with distinct characteristics. Sci Rep (2014) 0.78
Characterization of the gut microbiome in epidemiologic studies: the multiethnic cohort experience. Ann Epidemiol (2016) 0.78
The probiotic Bifidobacterium breve B632 inhibited the growth of Enterobacteriaceae within colicky infant microbiota cultures. Biomed Res Int (2014) 0.77
Time-dependent post mortem changes in the composition of intestinal bacteria using real-time quantitative PCR. Gut Pathog (2013) 0.76
Tissue-Associated Bacterial Alterations in Rectal Carcinoma Patients Revealed by 16S rRNA Community Profiling. Front Cell Infect Microbiol (2016) 0.75
Spatial Heterogeneity of Gut Microbial Composition along the Gastrointestinal Tract in Natural Populations of House Mice. PLoS One (2016) 0.75
Extending colonic mucosal microbiome analysis-assessment of colonic lavage as a proxy for endoscopic colonic biopsies. Microbiome (2016) 0.75
Comparisons of Gut Microbiota Among Healthy Control, Patients With Conventional Adenoma, Sessile Serrated Adenoma, and Colorectal Cancer. J Cancer Prev (2017) 0.75
Comparative Analysis of the Gut Microbiota Composition between Captive and Wild Forest Musk Deer. Front Microbiol (2017) 0.75
Teleosts as Model Organisms to Understand Host-Microbe Interactions. J Bacteriol (2017) 0.75
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol (2009) 77.55
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol (2006) 57.72
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res (2008) 52.43
A core gut microbiome in obese and lean twins. Nature (2008) 52.30
Diversity of the human intestinal microbial flora. Science (2005) 49.64
An obesity-associated gut microbiome with increased capacity for energy harvest. Nature (2006) 44.35
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics (2006) 43.68
A human gut microbial gene catalogue established by metagenomic sequencing. Nature (2010) 43.63
Metagenomic analysis of the human distal gut microbiome. Science (2006) 29.76
UniFrac--an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics (2006) 25.13
The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data. Nucleic Acids Res (2006) 16.26
Estimating the population size for capture-recapture data with unequal catchability. Biometrics (1987) 11.61
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Gut flora in health and disease. Lancet (2003) 9.85
Review and re-analysis of domain-specific 16S primers. J Microbiol Methods (2003) 9.49
Mucosa-associated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from feces. Appl Environ Microbiol (2002) 6.74
Towards the human intestinal microbiota phylogenetic core. Environ Microbiol (2009) 5.72
Microbes in gastrointestinal health and disease. Gastroenterology (2008) 4.65
High-throughput diversity and functionality analysis of the gastrointestinal tract microbiota. Gut (2008) 4.10
Biodiversity of the mucosa-associated microbiota is stable along the distal digestive tract in healthy individuals and patients with IBD. Inflamm Bowel Dis (2005) 2.93
Targeting the human microbiome with antibiotics, probiotics, and prebiotics: gastroenterology enters the metagenomics era. Gastroenterology (2009) 1.96
Analysis of bacterial bowel communities of IBD patients: what has it revealed? Inflamm Bowel Dis (2008) 1.72
Importance of microbial colonization of the gut in early life to the development of immunity. Mutat Res (2007) 1.62
In vitro alterations of intestinal bacterial microbiota in fecal samples during storage. Diagn Microbiol Infect Dis (2004) 1.51
A molecular analysis of fecal and mucosal bacterial communities in irritable bowel syndrome. Dig Dis Sci (2009) 1.39
EnvDB, a database for describing the environmental distribution of prokaryotic taxa. Environ Microbiol Rep (2009) 1.06
Microbiota composition of the intestinal mucosa: association with fecal microbiota? Microbiol Immunol (2004) 0.97
Differential clustering of bowel biopsy-associated bacterial profiles of specimens collected in Mexico and Canada: what do these profiles represent? J Med Microbiol (2008) 0.86
Colonoscopy versus fecal immunochemical testing in colorectal-cancer screening. N Engl J Med (2012) 7.18
Reductive genome evolution in Buchnera aphidicola. Proc Natl Acad Sci U S A (2003) 4.88
The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus. Proc Natl Acad Sci U S A (2004) 4.77
Determination of the core of a minimal bacterial gene set. Microbiol Mol Biol Rev (2004) 4.14
A small microbial genome: the end of a long symbiotic relationship? Science (2006) 3.81
The genome sequence of Blochmannia floridanus: comparative analysis of reduced genomes. Proc Natl Acad Sci U S A (2003) 3.81
Learning how to live together: genomic insights into prokaryote-animal symbioses. Nat Rev Genet (2008) 3.17
A nationwide study of mortality associated with hospital admission due to severe gastrointestinal events and those associated with nonsteroidal antiinflammatory drug use. Am J Gastroenterol (2005) 2.60
High diversity of the viral community from an Antarctic lake. Science (2009) 2.57
Time trends and impact of upper and lower gastrointestinal bleeding and perforation in clinical practice. Am J Gastroenterol (2009) 2.53
A classification scheme for mobilization regions of bacterial plasmids. FEMS Microbiol Rev (2004) 2.40
Evaluation of postsurgical recurrence in Crohn's disease: a new indication for capsule endoscopy? Gastrointest Endosc (2007) 2.36
The contribution of epistasis to the architecture of fitness in an RNA virus. Proc Natl Acad Sci U S A (2004) 2.35
Endosymbiotic bacteria: groEL buffers against deleterious mutations. Nature (2002) 2.21
The enigma of prokaryotic life in deep hypersaline anoxic basins. Science (2005) 2.17
Metatranscriptomic approach to analyze the functional human gut microbiota. PLoS One (2011) 2.14
Gut microbiota disturbance during antibiotic therapy: a multi-omic approach. Gut (2012) 2.10
Immunity and other defenses in pea aphids, Acyrthosiphon pisum. Genome Biol (2010) 2.09
Legionella pneumophila pangenome reveals strain-specific virulence factors. BMC Genomics (2010) 1.98
Extreme genome reduction in Buchnera spp.: toward the minimal genome needed for symbiotic life. Proc Natl Acad Sci U S A (2002) 1.93
Genome rearrangement distances and gene order phylogeny in gamma-Proteobacteria. Mol Biol Evol (2005) 1.88
Limits of life in MgCl2-containing environments: chaotropicity defines the window. Environ Microbiol (2007) 1.80
Microbiome diversity in the bronchial tracts of patients with chronic obstructive pulmonary disease. J Clin Microbiol (2012) 1.61
The bacterial pan-genome:a new paradigm in microbiology. Int Microbiol (2010) 1.60
The Gypsy Database (GyDB) of mobile genetic elements: release 2.0. Nucleic Acids Res (2010) 1.58
Effect of ribavirin on the mutation rate and spectrum of hepatitis C virus in vivo. J Virol (2009) 1.58
Selection for robustness in mutagenized RNA viruses. PLoS Genet (2007) 1.58
Stratified prokaryote network in the oxic-anoxic transition of a deep-sea halocline. Nature (2006) 1.54
Genomic plasticity in prokaryotes: the case of the square haloarchaeon. ISME J (2007) 1.54
Environmental distribution of prokaryotic taxa. BMC Microbiol (2010) 1.54
One year intermittent rifaximin plus fibre supplementation vs. fibre supplementation alone to prevent diverticulitis recurrence: a proof-of-concept study. Dig Liver Dis (2012) 1.54
Primary producing prokaryotic communities of brine, interface and seawater above the halocline of deep anoxic lake L'Atalante, Eastern Mediterranean Sea. ISME J (2007) 1.49
Is the quasispecies concept relevant to RNA viruses? J Virol (2002) 1.48
Risk of advanced proximal neoplasms according to distal colorectal findings: comparison of sigmoidoscopy-based strategies. J Natl Cancer Inst (2013) 1.47
Coexistence of Wolbachia with Buchnera aphidicola and a secondary symbiont in the aphid Cinara cedri. J Bacteriol (2004) 1.45
[Safety of proton pump inhibitors]. Med Clin (Barc) (2006) 1.41
Molecular basis of adaptive convergence in experimental populations of RNA viruses. Genetics (2002) 1.41
Evaluating the fidelity of de novo short read metagenomic assembly using simulated data. PLoS One (2011) 1.39
Evolutionary convergence and nitrogen metabolism in Blattabacterium strain Bge, primary endosymbiont of the cockroach Blattella germanica. PLoS Genet (2009) 1.38
The striking case of tryptophan provision in the cedar aphid Cinara cedri. J Bacteriol (2008) 1.36
Why are the genomes of endosymbiotic bacteria so stable? Trends Genet (2003) 1.36
Reconstructing the ancestor of Mycobacterium leprae: the dynamics of gene loss and genome reduction. Genome Res (2007) 1.34
Serratia symbiotica from the aphid Cinara cedri: a missing link from facultative to obligate insect endosymbiont. PLoS Genet (2011) 1.34
Clinical patterns and outcomes of ischaemic colitis: results of the Working Group for the Study of Ischaemic Colitis in Spain (CIE study). Scand J Gastroenterol (2010) 1.33
Toward minimal bacterial cells: evolution vs. design. FEMS Microbiol Rev (2008) 1.32
Epistasis and the adaptability of an RNA virus. Genetics (2005) 1.31
The active human gut microbiota differs from the total microbiota. PLoS One (2011) 1.30
The cost of replication fidelity in an RNA virus. Proc Natl Acad Sci U S A (2005) 1.28
Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees. Biol Direct (2009) 1.27
The frontier between cell and organelle: genome analysis of Candidatus Carsonella ruddii. BMC Evol Biol (2007) 1.27
Evolutionary trajectories of beta-lactamase CTX-M-1 cluster enzymes: predicting antibiotic resistance. PLoS Pathog (2010) 1.26
Estimating the extent of horizontal gene transfer in metagenomic sequences. BMC Genomics (2008) 1.24
Identification of the weevil immune genes and their expression in the bacteriome tissue. BMC Biol (2008) 1.24
The evolutionary fate of nonfunctional DNA in the bacterial endosymbiont Buchnera aphidicola. Mol Biol Evol (2004) 1.24
Evolution of the secondary symbiont "Candidatus serratia symbiotica" in aphid species of the subfamily lachninae. Appl Environ Microbiol (2008) 1.22
Natural microbial diversity in superficial sediments of Milazzo Harbor (Sicily) and community successions during microcosm enrichment with various hydrocarbons. Environ Microbiol (2005) 1.21
Irritable bowel syndrome subtypes according to bowel habit: revisiting the alternating subtype. Eur J Gastroenterol Hepatol (2003) 1.20
Mobile genetic element proliferation and gene inactivation impact over the genome structure and metabolic capabilities of Sodalis glossinidius, the secondary endosymbiont of tsetse flies. BMC Genomics (2010) 1.20
A sliding window-based method to detect selective constraints in protein-coding genes and its application to RNA viruses. J Mol Evol (2002) 1.19
Genome degeneration and adaptation in a nascent stage of symbiosis. Genome Biol Evol (2014) 1.18
The evolution of the heat-shock protein GroEL from Buchnera, the primary endosymbiont of aphids, is governed by positive selection. Mol Biol Evol (2002) 1.18
GroEL and the maintenance of bacterial endosymbiosis. Trends Genet (2004) 1.18
Prevalence of constipation: agreement among several criteria and evaluation of the diagnostic accuracy of qualifying symptoms and self-reported definition in a population-based survey in Spain. Am J Epidemiol (2004) 1.17
Phylogenomic evidence for the presence of a flagellum and cbb(3) oxidase in the free-living mitochondrial ancestor. Mol Biol Evol (2011) 1.16
Evidence of recombination in intrapatient populations of hepatitis C virus. PLoS One (2008) 1.16
Whole-genome sequence of Stenotrophomonas maltophilia D457, a clinical isolate and a model strain. J Bacteriol (2012) 1.16
Modifiable endoscopic factors that influence the adenoma detection rate in colorectal cancer screening colonoscopies. Gastrointest Endosc (2012) 1.15
Study of bacterial communities in Antarctic coastal waters by a combination of 16S rRNA and 16S rDNA sequencing. Environ Microbiol (2006) 1.15
Molecular epidemiology of a hepatitis C virus outbreak in a hemodialysis unit. J Clin Microbiol (2005) 1.14
Massive presence of insertion sequences in the genome of SOPE, the primary endosymbiont of the rice weevil Sitophilus oryzae. Int Microbiol (2008) 1.13
Mapping natural polymorphisms of hepatitis C virus NS3/4A protease and antiviral resistance to inhibitors in worldwide isolates. Antivir Ther (2008) 1.13
From phylogenetics to phylogenomics: the evolutionary relationships of insect endosymbiotic gamma-Proteobacteria as a test case. Syst Biol (2007) 1.13