Published in BMC Bioinformatics on September 09, 2010
Genome-wide RNA-seq analysis of human and mouse platelet transcriptomes. Blood (2011) 3.37
LabKey Server: an open source platform for scientific data integration, analysis and collaboration. BMC Bioinformatics (2011) 1.94
openBIS: a flexible framework for managing and analyzing complex data in biology research. BMC Bioinformatics (2011) 1.91
TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data. Bioinformatics (2011) 1.29
Coordinate expression of transcripts and proteins in platelets. Blood (2013) 1.18
The detection of microRNA associated with Alzheimer's disease in biological fluids using next-generation sequencing technologies. Front Genet (2013) 1.08
MendeLIMS: a web-based laboratory information management system for clinical genome sequencing. BMC Bioinformatics (2014) 1.01
QTREDS: a Ruby on Rails-based platform for omics laboratories. BMC Bioinformatics (2014) 0.90
Ccdc94 protects cells from ionizing radiation by inhibiting the expression of p53. PLoS Genet (2012) 0.90
SMITH: a LIMS for handling next-generation sequencing workflows. BMC Bioinformatics (2014) 0.88
The RON receptor tyrosine kinase promotes metastasis by triggering MBD4-dependent DNA methylation reprogramming. Cell Rep (2014) 0.87
SeqBench: integrated solution for the management and analysis of exome sequencing data. BMC Res Notes (2014) 0.84
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Personalized Oncology Suite: integrating next-generation sequencing data and whole-slide bioimages. BMC Bioinformatics (2014) 0.78
A case study for efficient management of high throughput primary lab data. BMC Res Notes (2011) 0.78
Onco-STS: a web-based laboratory information management system for sample and analysis tracking in oncogenomic experiments. Source Code Biol Med (2014) 0.75
High-resolution profiling of histone methylations in the human genome. Cell (2007) 85.74
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature (2007) 65.18
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The generic genome browser: a building block for a model organism system database. Genome Res (2002) 42.64
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The MGED Ontology: a resource for semantics-based description of microarray experiments. Bioinformatics (2006) 7.37
Integrating biological data--the Distributed Annotation System. BMC Bioinformatics (2008) 6.56
ENCODE whole-genome data in the UCSC Genome Browser. Nucleic Acids Res (2009) 5.98
Integrating sequence and structural biology with DAS. BMC Bioinformatics (2007) 5.12
Open annotation offers a democratic solution to genome sequencing. Nature (2000) 4.48
Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks. BMC Bioinformatics (2008) 4.41
Genoviz Software Development Kit: Java tool kit for building genomics visualization applications. BMC Bioinformatics (2009) 1.91
Tumor grafts derived from women with breast cancer authentically reflect tumor pathology, growth, metastasis and disease outcomes. Nat Med (2011) 4.47
Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks. BMC Bioinformatics (2008) 4.41
Patient-derived models of human breast cancer: protocols for in vitro and in vivo applications in tumor biology and translational medicine. Curr Protoc Pharmacol (2013) 1.04
Novel venom peptides from the cone snail Conus pulicarius discovered through next-generation sequencing of its venom duct transcriptome. Mar Genomics (2012) 0.99
Radiosensitization of cervical cancer cells via double-strand DNA break repair inhibition. Gynecol Oncol (2008) 0.99
Identifying clinical/translational research cohorts: ascertainment via querying an integrated multi-source database. J Am Med Inform Assoc (2012) 0.90
Combining quantitative genetic footprinting and trait enrichment analysis to identify fitness determinants of a bacterial pathogen. PLoS Genet (2013) 0.87
Global expression profiling identifies a novel biosignature for protein aggregation R120GCryAB cardiomyopathy in mice. Physiol Genomics (2008) 0.87
Polymorphisms in the NPY2R gene show significant associations with BMI that are additive to FTO, MC4R, and NPFFR2 gene effects. Obesity (Silver Spring) (2011) 0.87
Gains in sensitivity with a device that mixes microarray hybridization solution in a 25-microm-thick chamber. Anal Chem (2002) 0.86