Published in Bioinformatics on September 21, 2010
The genomes of two key bumblebee species with primitive eusocial organization. Genome Biol (2015) 1.21
Composition and evolution of the vertebrate and mammalian selenoproteomes. PLoS One (2012) 1.11
Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection. Proc Natl Acad Sci U S A (2015) 1.05
Translation in giant viruses: a unique mixture of bacterial and eukaryotic termination schemes. PLoS Genet (2012) 0.89
SECISearch3 and Seblastian: new tools for prediction of SECIS elements and selenoproteins. Nucleic Acids Res (2013) 0.88
Novel Ciliate Genetic Code Variants Including the Reassignment of All Three Stop Codons to Sense Codons in Condylostoma magnum. Mol Biol Evol (2016) 0.79
Evolution of selenophosphate synthetases: emergence and relocation of function through independent duplications and recurrent subfunctionalization. Genome Res (2015) 0.78
Lokiarchaeota Marks the Transition between the Archaeal and Eukaryotic Selenocysteine Encoding Systems. Mol Biol Evol (2016) 0.78
Detecting and comparing non-coding RNAs in the high-throughput era. Int J Mol Sci (2013) 0.78
SelenoDB 2.0: annotation of selenoprotein genes in animals and their genetic diversity in humans. Nucleic Acids Res (2013) 0.78
Computational identification of the selenocysteine tRNA (tRNASec) in genomes. PLoS Comput Biol (2017) 0.75
Human selenoprotein P and S variant mRNAs with different numbers of SECIS elements and inferences from mutant mice of the roles of multiple SECIS elements. Open Biol (2016) 0.75
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31
T-Coffee: A novel method for fast and accurate multiple sequence alignment. J Mol Biol (2000) 57.88
Automated generation of heuristics for biological sequence comparison. BMC Bioinformatics (2005) 24.54
GeneWise and Genomewise. Genome Res (2004) 17.87
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2009) 12.51
Evaluation of gene structure prediction programs. Genomics (1996) 8.57
EGASP: the human ENCODE Genome Annotation Assessment Project. Genome Biol (2006) 7.06
The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. Proc Natl Acad Sci U S A (2007) 3.58
New mammalian selenocysteine-containing proteins identified with an algorithm that searches for selenocysteine insertion sequence elements. J Biol Chem (1999) 2.62
Selenoproteins and selenocysteine insertion system in the model plant cell system, Chlamydomonas reinhardtii. EMBO J (2002) 2.13
Two distinct SECIS structures capable of directing selenocysteine incorporation in eukaryotes. RNA (1999) 2.06
Selenocysteine incorporation machinery and the role of selenoproteins in development and health. Prog Nucleic Acid Res Mol Biol (2006) 1.89
Insight into mammalian selenocysteine insertion: domain structure and ribosome binding properties of Sec insertion sequence binding protein 2. Mol Cell Biol (2001) 1.74
Eukaryotic selenoproteins and selenoproteomes. Biochim Biophys Acta (2009) 1.59
Reconsidering the evolution of eukaryotic selenoproteins: a novel nonmammalian family with scattered phylogenetic distribution. EMBO Rep (2004) 1.58
An algorithm for identification of bacterial selenocysteine insertion sequence elements and selenoprotein genes. Bioinformatics (2005) 1.50
2x genomes--depth does matter. Genome Biol (2010) 1.47
A highly efficient form of the selenocysteine insertion sequence element in protozoan parasites and its use in mammalian cells. Proc Natl Acad Sci U S A (2007) 1.38
Human selenoproteins at a glance. Cell Mol Life Sci (2005) 1.34
Selenophosphate synthetase 2 is essential for selenoprotein biosynthesis. Biochem J (2007) 1.34
Evolutionarily different RNA motifs and RNA-protein complexes to achieve selenoprotein synthesis. Biochimie (2002) 1.33
The selenium to selenoprotein pathway in eukaryotes: more molecular partners than anticipated. Biochim Biophys Acta (2009) 1.33
Selenium metabolism in Trypanosoma: characterization of selenoproteomes and identification of a Kinetoplastida-specific selenoprotein. Nucleic Acids Res (2006) 1.32
Identifying protein-coding genes in genomic sequences. Genome Biol (2009) 1.26
Diversity and functional plasticity of eukaryotic selenoproteins: identification and characterization of the SelJ family. Proc Natl Acad Sci U S A (2005) 1.23
The Plasmodium selenoproteome. Nucleic Acids Res (2006) 1.21
Identification and characterization of a selenoprotein family containing a diselenide bond in a redox motif. Proc Natl Acad Sci U S A (2007) 1.18
Relaxation of selective constraints causes independent selenoprotein extinction in insect genomes. PLoS One (2008) 1.15
A novel eukaryotic selenoprotein in the haptophyte alga Emiliania huxleyi. J Biol Chem (2005) 1.02
Finding needles in a haystack. In silico identification of eukaryotic selenoprotein genes. EMBO Rep (2004) 1.01
SelenoDB 1.0 : a database of selenoprotein genes, proteins and SECIS elements. Nucleic Acids Res (2008) 1.00
Identification of Leishmania selenoproteins and SECIS element. Mol Biochem Parasitol (2006) 0.98
SECISaln, a web-based tool for the creation of structure-based alignments of eukaryotic SECIS elements. Bioinformatics (2009) 0.97
In silico identification of the sea squirt selenoproteome. BMC Genomics (2010) 0.95
Identification and characterization of Fep15, a new selenocysteine-containing member of the Sep15 protein family. Biochem J (2006) 0.95
Low exchangeability of selenocysteine, the 21st amino acid, in vertebrate proteins. Mol Biol Evol (2009) 0.85
A method for identification of selenoprotein genes in archaeal genomes. Genomics Proteomics Bioinformatics (2009) 0.81
The sequence of the human genome. Science (2001) 101.55
Evaluation of gene structure prediction programs. Genomics (1996) 8.57
SGP-1: prediction and validation of homologous genes based on sequence alignments. Genome Res (2001) 8.15
GeneID in Drosophila. Genome Res (2000) 6.61
gff2ps: visualizing genomic annotations. Bioinformatics (2000) 2.69
Exon structure conservation despite low sequence similarity: a relic of dramatic events in evolution? EMBO J (2001) 2.50
Fusion of the human gene for the polyubiquitination coeffector UEV1 with Kua, a newly identified gene. Genome Res (2000) 2.19
In silico identification of novel selenoproteins in the Drosophila melanogaster genome. EMBO Rep (2001) 2.12
Genome sequence comparisons: hurdles in the fast lane to functional genomics. Brief Bioinform (2000) 1.71
Improving data and knowledge management to better integrate health care and research. J Intern Med (2013) 1.15
SPIn: model selection for phylogenetic mixtures via linear invariants. Mol Biol Evol (2011) 0.93
Autoimmune response in AIDS. Nature (1990) 0.85
Estimation of protein coding density in a corpus of DNA sequence data. Nucleic Acids Res (1993) 0.78
A common pattern between the TGF-beta family and glutaredoxin. Biochem J (1991) 0.77
Three-dimensional modelling of human cytochrome P450 1A2 and its interaction with caffeine and MeIQ. J Comput Aided Mol Des (1997) 0.77