Published in J Bioinform Comput Biol on December 01, 2010
Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling. Cancer Cell (2002) 11.83
Mapping human genetic diversity in Asia. Science (2009) 7.40
Accomplishments and challenges in literature data mining for biology. Bioinformatics (2002) 5.19
Selection and evaluation of tagging SNPs in the neuronal-sodium-channel gene SCN1A: implications for linkage-disequilibrium gene mapping. Am J Hum Genet (2003) 4.58
Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions. Bioinformatics (2006) 3.94
Complex discovery from weighted PPI networks. Bioinformatics (2009) 2.74
DNAFSMiner: a web-based software toolbox to recognize two types of functional sites in DNA sequences. Bioinformatics (2004) 2.42
A comparative study on feature selection and classification methods using gene expression profiles and proteomic patterns. Genome Inform (2002) 1.90
An empirical comparison of several recent epistatic interaction detection methods. Bioinformatics (2011) 1.70
Using indirect protein-protein interactions for protein complex prediction. J Bioinform Comput Biol (2008) 1.52
High incidence of allelic loss at 16q12.2 region spanning RBL2/p130 gene in retinoblastoma. Cancer Biol Ther (2009) 1.47
Consistency, comprehensiveness, and compatibility of pathway databases. BMC Bioinformatics (2010) 1.47
Low cytosine triphosphate synthase 2 expression renders resistance to 5-fluorouracil in colorectal cancer. Cancer Biol Ther (2011) 1.45
A generative model based approach to retrieving ischemic stroke images. AMIA Annu Symp Proc (2011) 1.41
The contributions of oxytocin and vasopressin pathway genes to human behavior. Horm Behav (2011) 1.40
Optimal gene expression analysis by microarrays. Cancer Cell (2002) 1.34
How advancement in biological network analysis methods empowers proteomics. Proteomics (2012) 1.30
IntPath--an integrated pathway gene relationship database for model organisms and important pathogens. BMC Syst Biol (2012) 1.28
Spinal muscular atrophy: from gene discovery to clinical trials. Ann Hum Genet (2013) 1.15
Comparative analysis and assessment of M. tuberculosis H37Rv protein-protein interaction datasets. BMC Genomics (2011) 1.14
Using indirect protein interactions for the prediction of Gene Ontology functions. BMC Bioinformatics (2007) 1.13
Data mining tools for biological sequences. J Bioinform Comput Biol (2003) 1.10
Dynamics of co-transcriptional pre-mRNA folding influences the induction of dystrophin exon skipping by antisense oligonucleotides. PLoS One (2008) 1.09
Network-based pipeline for analyzing MS data: an application toward liver cancer. J Proteome Res (2011) 1.07
An in-silico method for prediction of polyadenylation signals in human sequences. Genome Inform (2003) 1.06
FIMM, a database of functional molecular immunology: update 2002. Nucleic Acids Res (2002) 1.06
Discovery of significant rules for classifying cancer diagnosis data. Bioinformatics (2003) 1.06
PLncDB: plant long non-coding RNA database. Bioinformatics (2013) 1.05
Identifying good diagnostic gene groups from gene expression profiles using the concept of emerging patterns. Bioinformatics (2002) 1.05
Increasing the reliability of protein interactomes. Drug Discov Today (2008) 1.04
Finding consistent disease subnetworks using PFSNet. Bioinformatics (2013) 1.00
Discovering motif pairs at interaction sites from protein sequences on a proteome-wide scale. Bioinformatics (2006) 1.00
Using feature generation and feature selection for accurate prediction of translation initiation sites. Genome Inform (2002) 0.98
Assessing and predicting protein interactions using both local and global network topological metrics. Genome Inform (2008) 0.97
Random forests on Hadoop for genome-wide association studies of multivariate neuroimaging phenotypes. BMC Bioinformatics (2013) 0.97
Stringent DDI-based prediction of H. sapiens-M. tuberculosis H37Rv protein-protein interactions. BMC Syst Biol (2013) 0.96
Epstein-Barr virus nuclear antigen leader protein localizes to promoters and enhancers with cell transcription factors and EBNA2. Proc Natl Acad Sci U S A (2013) 0.95
Finding consistent disease subnetworks across microarray datasets. BMC Bioinformatics (2011) 0.95
An efficient strategy for extensive integration of diverse biological data for protein function prediction. Bioinformatics (2007) 0.95
Simple rules underlying gene expression profiles of more than six subtypes of acute lymphoblastic leukemia (ALL) patients. Bioinformatics (2003) 0.95
Using indirect protein-protein interactions for protein complex predication. Comput Syst Bioinformatics Conf (2007) 0.94
MIRACH: efficient model checker for quantitative biological pathway models. Bioinformatics (2011) 0.94
eCEO: an efficient Cloud Epistasis cOmputing model in genome-wide association study. Bioinformatics (2011) 0.93
Antibody-specified B-cell epitope prediction in line with the principle of context-awareness. IEEE/ACM Trans Comput Biol Bioinform (2011) 0.93
Proteomics signature profiling (PSP): a novel contextualization approach for cancer proteomics. J Proteome Res (2012) 0.93
Improved statistical model checking methods for pathway analysis. BMC Bioinformatics (2012) 0.92
Increasing confidence of protein-protein interactomes. Genome Inform (2006) 0.91
Using amino acid patterns to accurately predict translation initiation sites. In Silico Biol (2004) 0.90
Intrinsically disordered proteins aggregate at fungal cell-to-cell channels and regulate intercellular connectivity. Proc Natl Acad Sci U S A (2012) 0.90
Characterization of medical time series using fuzzy similarity-based fractal dimensions. Artif Intell Med (2003) 0.90
Protein complex prediction based on k-connected subgraphs in protein interaction network. BMC Syst Biol (2010) 0.89
U-shaped relation between plasma oxytocin levels and behavior in the trust game. PLoS One (2012) 0.88
Use of extreme patient samples for outcome prediction from gene expression data. Bioinformatics (2005) 0.88
DA 1.0: parameter estimation of biological pathways using data assimilation approach. Bioinformatics (2010) 0.88
Accurate prediction of hot spot residues through physicochemical characteristics of amino acid sequences. Proteins (2013) 0.88
FastTagger: an efficient algorithm for genome-wide tag SNP selection using multi-marker linkage disequilibrium. BMC Bioinformatics (2010) 0.87
Dopaminergic polymorphisms associated with time-on-task declines and fatigue in the Psychomotor Vigilance Test. PLoS One (2012) 0.87
Enhancing the utility of Proteomics Signature Profiling (PSP) with Pathway Derived Subnets (PDSs), performance analysis and specialised ontologies. BMC Genomics (2013) 0.87
An approach to identifying drug resistance associated mutations in bacterial strains. BMC Genomics (2012) 0.86
A prospective study in the rational design of efficient antisense oligonucleotides for exon skipping in the DMD gene. Hum Gene Ther (2012) 0.86
Discovery of protein complexes with core-attachment structures from Tandem Affinity Purification (TAP) data. J Comput Biol (2011) 0.86
The role of miRNAs in complex formation and control. Bioinformatics (2011) 0.86
CAMBer: an approach to support comparative analysis of multiple bacterial strains. BMC Genomics (2011) 0.85
Comparative network-based recovery analysis and proteomic profiling of neurological changes in valproic acid-treated mice. J Proteome Res (2013) 0.85
Next generation sequencing unravels the biosynthetic ability of spearmint (Mentha spicata) peltate glandular trichomes through comparative transcriptomics. BMC Plant Biol (2014) 0.85
Identification and characterisation of human dysferlin transcript variants: implications for dysferlin mutational screening and isoforms. Hum Genet (2009) 0.84
Supervised maximum-likelihood weighting of composite protein networks for complex prediction. BMC Syst Biol (2012) 0.84
Brief overview of bioinformatics activities in Singapore. PLoS Comput Biol (2009) 0.84
Progress in computational studies of host-pathogen interactions. J Bioinform Comput Biol (2012) 0.84
Decomposing PPI networks for complex discovery. Proteome Sci (2011) 0.83
Wrestling with biomedical research results: language resources and literature analysis. Introduction. J Bioinform Comput Biol (2010) 0.83
Integrating water exclusion theory into β contacts to predict binding free energy changes and binding hot spots. BMC Bioinformatics (2014) 0.82
A probabilistic graph-theoretic approach to integrate multiple predictions for the protein-protein subnetwork prediction challenge. Ann N Y Acad Sci (2009) 0.82
From the static interactome to dynamic protein complexes: Three challenges. J Bioinform Comput Biol (2015) 0.82
B-cell epitope prediction through a graph model. BMC Bioinformatics (2012) 0.81
Paramyotonia congenita: from clinical diagnosis to in silico protein modeling analysis. Pediatr Int (2012) 0.81
Temporal factors in school closure policy for mitigating the spread of influenza. J Public Health Policy (2011) 0.81
Progressive dry-core-wet-rim hydration trend in a nested-ring topology of protein binding interfaces. BMC Bioinformatics (2012) 0.81
A database of annotated promoters of genes associated with common respiratory and related diseases. Am J Respir Cell Mol Biol (2012) 0.81
Discovery of small protein complexes from PPI networks with size-specific supervised weighting. BMC Syst Biol (2014) 0.81
Automated DNA mutation detection using universal conditions direct sequencing: application to ten muscular dystrophy genes. BMC Genet (2009) 0.81
Networks in proteomics analysis of cancer. Curr Opin Biotechnol (2013) 0.81
Identification and characterization of a novel human dysferlin transcript: dysferlin_v1. Hum Genet (2006) 0.80
LipidGO: database for lipid-related GO terms and applications. Bioinformatics (2013) 0.80
Structural analysis of the hot spots in the binding between H1N1 HA and the 2D1 antibody: do mutations of H1N1 from 1918 to 2009 affect much on this binding? Bioinformatics (2011) 0.80
A model driven approach to imbalanced data sampling in medical decision making. Stud Health Technol Inform (2010) 0.80
Rule discovery and distance separation to detect reliable miRNA biomarkers for the diagnosis of lung squamous cell carcinoma. BMC Genomics (2014) 0.80
An automated pathological class level annotation system for volumetric brain images. AMIA Annu Symp Proc (2012) 0.79
JBCB, the first decade. J Bioinform Comput Biol (2014) 0.79
Cost-effectiveness analysis of colorectal cancer screening strategies in Singapore: a dynamic decision analytic approach. Stud Health Technol Inform (2004) 0.79
Dimeric gold nanoparticle assembly for detection and discrimination of single nucleotide mutation in Duchenne muscular dystrophy. Biosens Bioelectron (2010) 0.79
Genome-wide analysis of regions similar to promoters of histone genes. BMC Syst Biol (2010) 0.79
CMPF: class-switching minimized pathfinding in metabolic networks. BMC Bioinformatics (2012) 0.78
PGMC: a framework for probabilistic graphic model combination. AMIA Annu Symp Proc (2005) 0.78
Detection of outlier residues for improving interface prediction in protein heterocomplexes. IEEE/ACM Trans Comput Biol Bioinform (2012) 0.78
eCAMBer: efficient support for large-scale comparative analysis of multiple bacterial strains. BMC Bioinformatics (2014) 0.78
Sirius PSB: a generic system for analysis of biological sequences. J Bioinform Comput Biol (2009) 0.78
Dragon Promoter Mapper (DPM): a Bayesian framework for modelling promoter structures. Bioinformatics (2006) 0.78
Molecular diagnosis of neurogenetic disorders involving trinucleotide repeat expansions. Expert Rev Mol Diagn (2005) 0.77
Recognition of polyadenylation sites from Arabidopsis genomic sequences. Genome Inform (2007) 0.77