Published in Database (Oxford) on January 18, 2011
DNorm: disease name normalization with pairwise learning to rank. Bioinformatics (2013) 2.83
BioContext: an integrated text mining system for large-scale extraction and contextualization of biomolecular events. Bioinformatics (2012) 1.29
GeneView: a comprehensive semantic search engine for PubMed. Nucleic Acids Res (2012) 1.23
Trendspotting in the Protein Data Bank. FEBS Lett (2013) 1.19
A survey of current trends in computational drug repositioning. Brief Bioinform (2015) 1.18
Neurocarta: aggregating and sharing disease-gene relations for the neurosciences. BMC Genomics (2013) 1.06
e!DAL--a framework to store, share and publish research data. BMC Bioinformatics (2014) 1.02
GNormPlus: An Integrative Approach for Tagging Genes, Gene Families, and Protein Domains. Biomed Res Int (2015) 1.02
Community challenges in biomedical text mining over 10 years: success, failure and the future. Brief Bioinform (2015) 1.00
Improving information retrieval using Medical Subject Headings Concepts: a test case on rare and chronic diseases. J Med Libr Assoc (2012) 1.00
Biological databases for human research. Genomics Proteomics Bioinformatics (2015) 0.96
Studying PubMed usages in the field for complex problem solving: Implications for tool design. J Am Soc Inf Sci Technol (2013) 0.95
OMIT: dynamic, semi-automated ontology development for the microRNA domain. PLoS One (2014) 0.94
Big data in medicine is driving big changes. Yearb Med Inform (2014) 0.94
mirEX: a platform for comparative exploration of plant pri-miRNA expression data. Nucleic Acids Res (2011) 0.92
Performance evaluation of Unified Medical Language System®'s synonyms expansion to query PubMed. BMC Med Inform Decis Mak (2012) 0.91
PESCADOR, a web-based tool to assist text-mining of biointeractions extracted from PubMed queries. BMC Bioinformatics (2011) 0.90
Leveraging medical thesauri and physician feedback for improving medical literature retrieval for case queries. J Am Med Inform Assoc (2012) 0.90
GO2PUB: Querying PubMed with semantic expansion of gene ontology terms. J Biomed Semantics (2012) 0.89
PolySearch2: a significantly improved text-mining system for discovering associations between human diseases, genes, drugs, metabolites, toxins and more. Nucleic Acids Res (2015) 0.89
pubmed2ensembl: a resource for mining the biological literature on genes. PLoS One (2011) 0.89
A framework for annotating human genome in disease context. PLoS One (2012) 0.89
A method for integrating and ranking the evidence for biochemical pathways by mining reactions from text. Bioinformatics (2013) 0.89
Mapping patient safety: a large-scale literature review using bibliometric visualisation techniques. BMJ Open (2014) 0.88
How Twitter Is Studied in the Medical Professions: A Classification of Twitter Papers Indexed in PubMed. Med 2 0 (2013) 0.87
Topics in machine learning for biomedical literature analysis and text retrieval. J Biomed Semantics (2012) 0.86
Mining the Gene Wiki for functional genomic knowledge. BMC Genomics (2011) 0.86
Evaluating gold standard corpora against gene/protein tagging solutions and lexical resources. J Biomed Semantics (2013) 0.85
Tumor microenvironment-associated modifications of alternative splicing. RNA (2013) 0.85
PubMedMiner: Mining and Visualizing MeSH-based Associations in PubMed. AMIA Annu Symp Proc (2014) 0.85
Recent Advances and Emerging Applications in Text and Data Mining for Biomedical Discovery. Brief Bioinform (2015) 0.84
What's that gene (or protein)? Online resources for exploring functions of genes, transcripts, and proteins. Mol Biol Cell (2014) 0.84
Micropublications: a semantic model for claims, evidence, arguments and annotations in biomedical communications. J Biomed Semantics (2014) 0.84
Towards Transforming Expert-based Content to Evidence-based Content. AMIA Jt Summits Transl Sci Proc (2014) 0.83
Publication Trends in Acupuncture Research: A 20-Year Bibliometric Analysis Based on PubMed. PLoS One (2016) 0.83
Literature classification for semi-automated updating of biological knowledgebases. BMC Genomics (2013) 0.80
CDAPubMed: a browser extension to retrieve EHR-based biomedical literature. BMC Med Inform Decis Mak (2012) 0.79
OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data. J Biomed Semantics (2016) 0.79
Accessing biomedical literature in the current information landscape. Methods Mol Biol (2014) 0.79
Network based integrated analysis of phenotype-genotype data for prioritization of candidate symptom genes. Biomed Res Int (2014) 0.79
Unsupervised gene function extraction using semantic vectors. Database (Oxford) (2014) 0.79
Protein Kinase CK2: Intricate Relationships within Regulatory Cellular Networks. Pharmaceuticals (Basel) (2017) 0.79
AuDis: an automatic CRF-enhanced disease normalization in biomedical text. Database (Oxford) (2016) 0.77
PubServer: literature searches by homology. Nucleic Acids Res (2014) 0.77
Past and future trends in cancer and biomedical research: a comparison between Egypt and the world using PubMed-indexed publications. BMC Res Notes (2012) 0.77
Improving the predictive value of interventional animal models data. Drug Discov Today (2014) 0.76
Editorial: A home for virology, ecology, epidemiology, and evolutionary biology. Virus Evol (2015) 0.76
Technology and Information Tool Preferences of Academics in the Field of Anaesthesiology. Turk J Anaesthesiol Reanim (2014) 0.75
Topics in machine learning for biomedical literature analysis and text retrieval. BMC Bioinformatics (2011) 0.75
Predicting clicks of PubMed articles. AMIA Annu Symp Proc (2013) 0.75
Using noun phrases for navigating biomedical literature on Pubmed: how many updates are we losing track of? PLoS One (2011) 0.75
Publication Productivity of Faculty of Medicine, Mansoura University Indexed in PubMed. Ann Med Health Sci Res (2014) 0.75
Biomedical image representation approach using visualness and spatial information in a concept feature space for interactive region-of-interest-based retrieval. J Med Imaging (Bellingham) (2015) 0.75
Prediction of relevant biomedical documents: a human microbiome case study. BioData Min (2015) 0.75
Integrated network analysis reveals potentially novel molecular mechanisms and therapeutic targets of refractory epilepsies. PLoS One (2017) 0.75
Improving the utility of MeSH® terms using the TopicalMeSH representation. J Biomed Inform (2016) 0.75
Constructing a molecular interaction network for thyroid cancer via large-scale text mining of gene and pathway events. BMC Syst Biol (2015) 0.75
A search engine to access PubMed monolingual subsets: proof of concept and evaluation in French. J Med Internet Res (2014) 0.75
Learning the Structure of Biomedical Relationships from Unstructured Text. PLoS Comput Biol (2015) 0.75
Disease named entity recognition by combining conditional random fields and bidirectional recurrent neural networks. Database (Oxford) (2016) 0.75
Chemical-induced disease relation extraction with various linguistic features. Database (Oxford) (2016) 0.75
A MeSH-based text mining method for identifying novel prebiotics. Medicine (Baltimore) (2016) 0.75
Mining locus tags in PubMed Central to improve microbial gene annotation. BMC Bioinformatics (2014) 0.75
neXtA5: accelerating annotation of articles via automated approaches in neXtProt. Database (Oxford) (2016) 0.75
Automated systems to identify relevant documents in product risk management. BMC Med Inform Decis Mak (2012) 0.75
Highly cited publications in pediatric neurosurgery: part 2. Childs Nerv Syst (2013) 0.75
Ontology-Driven Search and Triage: Design of a Web-Based Visual Interface for MEDLINE. JMIR Med Inform (2017) 0.75
Empirical study using network of semantically related associations in bridging the knowledge gap. J Transl Med (2014) 0.75
Improving the dictionary lookup approach for disease normalization using enhanced dictionary and query expansion. Database (Oxford) (2016) 0.75
Mining biomedical images towards valuable information retrieval in biomedical and life sciences. Database (Oxford) (2016) 0.75
A practical application of text mining to literature on cognitive rehabilitation and enhancement through neurostimulation. Front Syst Neurosci (2014) 0.75
Leveraging user query sessions to improve searching of medical literature. AMIA Annu Symp Proc (2013) 0.75
Researcher and Author Profiles: Opportunities, Advantages, and Limitations. J Korean Med Sci (2017) 0.75
Revealing topics and their evolution in biomedical literature using Bio-DTM: a case study of ginseng. Chin Med (2017) 0.75
Rapid and Reusable Text Visualization and Exploration Development with DELVE. AMIA Jt Summits Transl Sci Proc (2017) 0.75
Evaluation of the informatician perspective: determining types of research papers preferred by clinicians. BMC Med Inform Decis Mak (2017) 0.75
Exploring Wound-Healing Genomic Machinery with a Network-Based Approach. Pharmaceuticals (Basel) (2017) 0.75
Issues Associated With the Use of Semantic Web Technology in Knowledge Acquisition for Clinical Decision Support Systems: Systematic Review of the Literature. JMIR Med Inform (2017) 0.75
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res (2009) 12.51
Literature mining for the biologist: from information retrieval to biological discovery. Nat Rev Genet (2006) 8.23
GoPubMed: exploring PubMed with the Gene Ontology. Nucleic Acids Res (2005) 6.95
Overview of the protein-protein interaction annotation extraction task of BioCreative II. Genome Biol (2008) 6.38
MedMiner: an Internet text-mining tool for biomedical information, with application to gene expression profiling. Biotechniques (1999) 5.56
PubMed related articles: a probabilistic topic-based model for content similarity. BMC Bioinformatics (2007) 5.30
Overview of BioCreative II gene normalization. Genome Biol (2008) 5.05
Content-rich biological network constructed by mining PubMed abstracts. BMC Bioinformatics (2004) 4.97
EBIMed--text crunching to gather facts for proteins from Medline. Bioinformatics (2007) 4.53
Linking genes to literature: text mining, information extraction, and retrieval applications for biology. Genome Biol (2008) 4.36
Biomedical language processing: what's beyond PubMed? Mol Cell (2006) 4.27
Utilization of the PICO framework to improve searching PubMed for clinical questions. BMC Med Inform Decis Mak (2007) 3.83
Understanding PubMed user search behavior through log analysis. Database (Oxford) (2009) 3.27
SLIM: an alternative Web interface for MEDLINE/PubMed searches - a preliminary study. BMC Med Inform Decis Mak (2005) 3.24
PubNet: a flexible system for visualizing literature derived networks. Genome Biol (2005) 2.89
AliBaba: PubMed as a graph. Bioinformatics (2006) 2.82
BioText Search Engine: beyond abstract search. Bioinformatics (2007) 2.77
Yale Image Finder (YIF): a new search engine for retrieving biomedical images. Bioinformatics (2008) 2.67
iHOP web services. Nucleic Acids Res (2007) 2.65
PolySearch: a web-based text mining system for extracting relationships between human diseases, genes, mutations, drugs and metabolites. Nucleic Acids Res (2008) 2.63
Evaluation of Query Expansion Using MeSH in PubMed. Inf Retr Boston (2009) 2.39
Author Name Disambiguation in MEDLINE. ACM Trans Knowl Discov Data (2009) 2.35
XplorMed: a tool for exploring MEDLINE abstracts. Trends Biochem Sci (2001) 2.34
High-performance gene name normalization with GeNo. Bioinformatics (2009) 2.26
MScanner: a classifier for retrieving Medline citations. BMC Bioinformatics (2008) 2.24
eTBLAST: a web server to identify expert reviewers, appropriate journals and similar publications. Nucleic Acids Res (2007) 2.10
PubFinder: a tool for improving retrieval rate of relevant PubMed abstracts. Nucleic Acids Res (2005) 1.98
Text-mining approaches in molecular biology and biomedicine. Drug Discov Today (2005) 1.91
Semi-automatic semantic annotation of PubMed queries: a study on quality, efficiency, satisfaction. J Biomed Inform (2010) 1.91
Towards automatic recognition of scientifically rigorous clinical research evidence. J Am Med Inform Assoc (2008) 1.86
Getting started in text mining. PLoS Comput Biol (2008) 1.79
askMEDLINE: a free-text, natural language query tool for MEDLINE/PubMed. BMC Med Inform Decis Mak (2005) 1.77
Biomedical knowledge navigation by literature clustering. J Biomed Inform (2006) 1.71
Relemed: sentence-level search engine with relevance score for the MEDLINE database of biomedical articles. BMC Med Inform Decis Mak (2007) 1.66
PubCrawler: keeping up comfortably with PubMed and GenBank. Nucleic Acids Res (2004) 1.66
MedlineRanker: flexible ranking of biomedical literature. Nucleic Acids Res (2009) 1.64
For I dipped into the future. EMBO Rep (2010) 1.59
What's new in the library? What's new in GenBank? let PubCrawler tell you. Trends Genet (1999) 1.55
BabelMeSH: development of a cross-language tool for MEDLINE/PubMed. AMIA Annu Symp Proc (2006) 1.49
Biomedical text mining and its applications. PLoS Comput Biol (2009) 1.46
Anne O'Tate: A tool to support user-driven summarization, drill-down and browsing of PubMed search results. J Biomed Discov Collab (2008) 1.46
MiSearch adaptive pubMed search tool. Bioinformatics (2008) 1.46
MedEvi: retrieving textual evidence of relations between biomedical concepts from Medline. Bioinformatics (2008) 1.43
PubFocus: semantic MEDLINE/PubMed citations analytics through integration of controlled biomedical dictionaries and ranking algorithm. BMC Bioinformatics (2006) 1.41
PubMed Assistant: a biologist-friendly interface for enhanced PubMed search. Bioinformatics (2005) 1.40
HubMed: a web-based biomedical literature search interface. Nucleic Acids Res (2006) 1.36
Finding query suggestions for PubMed. AMIA Annu Symp Proc (2009) 1.25
Enabling multi-level relevance feedback on PubMed by integrating rank learning into DBMS. BMC Bioinformatics (2010) 1.24
The usefulness of dynamically categorizing search results. J Am Med Inform Assoc (2000) 1.23
Categorization of services for seeking information in biomedical literature: a typology for improvement of practice. Brief Bioinform (2008) 1.08
Interactive and fuzzy search: a dynamic way to explore MEDLINE. Bioinformatics (2010) 1.01
PubMed-EX: a web browser extension to enhance PubMed search with text mining features. Bioinformatics (2009) 0.97
Getting started in text mining: part two. PLoS Comput Biol (2009) 0.97
askMEDLINE: a report on a year-long experience. AMIA Annu Symp Proc (2006) 0.93
Knowledge discovery and system biology in molecular medicine: an application on neurodegenerative diseases. In Silico Biol (2005) 0.84
Probabilistic self-organizing maps for qualitative data. Neural Netw (2010) 0.81
Text mining. Methods Mol Biol (2008) 0.80