1
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eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data.
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J Bacteriol
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2004
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17.92
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2
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The evolutionary history of methicillin-resistant Staphylococcus aureus (MRSA).
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Proc Natl Acad Sci U S A
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2002
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15.85
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3
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Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance.
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Proc Natl Acad Sci U S A
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2004
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8.95
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4
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How clonal is Staphylococcus aureus?
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J Bacteriol
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2003
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7.97
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5
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Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei.
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J Clin Microbiol
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2003
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7.38
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6
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Opinion: Re-evaluating prokaryotic species.
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Nat Rev Microbiol
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2005
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7.19
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7
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Genetic analysis of the capsular biosynthetic locus from all 90 pneumococcal serotypes.
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PLoS Genet
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2006
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6.43
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8
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Multilocus sequence typing system for group B streptococcus.
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J Clin Microbiol
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2003
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6.22
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9
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Clonal relationships between invasive and carriage Streptococcus pneumoniae and serotype- and clone-specific differences in invasive disease potential.
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J Infect Dis
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2003
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5.73
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10
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EpiCollect: linking smartphones to web applications for epidemiology, ecology and community data collection.
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PLoS One
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2009
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4.76
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11
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Characterization of encapsulated and noncapsulated Haemophilus influenzae and determination of phylogenetic relationships by multilocus sequence typing.
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J Clin Microbiol
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2003
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4.47
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12
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Geographic distribution of Staphylococcus aureus causing invasive infections in Europe: a molecular-epidemiological analysis.
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PLoS Med
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2010
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4.05
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13
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Recombination and the nature of bacterial speciation.
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Science
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2007
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3.98
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14
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Evolutionary genetics of the capsular locus of serogroup 6 pneumococci.
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J Bacteriol
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2004
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3.81
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15
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The multilocus sequence typing network: mlst.net.
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Nucleic Acids Res
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2005
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3.49
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16
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Fuzzy species among recombinogenic bacteria.
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BMC Biol
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2005
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3.47
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17
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Rapid sequence-based identification of gonococcal transmission clusters in a large metropolitan area.
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J Infect Dis
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2004
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3.34
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18
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Temporal and geographic stability of the serogroup-specific invasive disease potential of Streptococcus pneumoniae in children.
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J Infect Dis
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2004
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3.31
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19
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The bacterial species challenge: making sense of genetic and ecological diversity.
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Science
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2009
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2.88
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20
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Predicted functions and linkage specificities of the products of the Streptococcus pneumoniae capsular biosynthetic loci.
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J Bacteriol
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2007
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2.67
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21
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A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic.
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Genome Res
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2013
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2.59
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22
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Assigning strains to bacterial species via the internet.
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BMC Biol
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2009
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2.49
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23
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Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing.
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Nat Genet
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2012
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2.44
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24
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Neutral microepidemic evolution of bacterial pathogens.
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Proc Natl Acad Sci U S A
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2005
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2.42
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25
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Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis.
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PLoS One
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2009
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2.38
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26
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Assessing the reliability of eBURST using simulated populations with known ancestry.
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BMC Microbiol
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2007
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2.36
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27
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Nonrandom distribution of Burkholderia pseudomallei clones in relation to geographical location and virulence.
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J Clin Microbiol
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2006
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2.34
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28
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Geographic distribution and clonal diversity of Streptococcus pneumoniae serotype 1 isolates.
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J Clin Microbiol
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2003
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2.17
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29
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Multilocus sequence typing of Swedish invasive group B streptococcus isolates indicates a neonatally associated genetic lineage and capsule switching.
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J Clin Microbiol
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2005
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2.06
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30
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The impact of homologous recombination on the generation of diversity in bacteria.
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J Theor Biol
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2005
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1.99
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31
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Invasiveness of serotypes and clones of Streptococcus pneumoniae among children in Finland.
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Infect Immun
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2005
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1.96
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32
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Multilocus sequence typing of Streptococcus pyogenes representing most known emm types and distinctions among subpopulation genetic structures.
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J Bacteriol
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2004
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1.95
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33
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Genetic relatedness of the Streptococcus pneumoniae capsular biosynthetic loci.
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J Bacteriol
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2007
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1.92
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34
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Sequences, sequence clusters and bacterial species.
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Philos Trans R Soc Lond B Biol Sci
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2006
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1.91
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35
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Isolates of Burkholderia pseudomallei from Northern Australia are distinct by multilocus sequence typing, but strain types do not correlate with clinical presentation.
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J Clin Microbiol
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2004
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1.88
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36
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Genomic evidence for the evolution of Streptococcus equi: host restriction, increased virulence, and genetic exchange with human pathogens.
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PLoS Pathog
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2009
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1.87
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37
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Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus.
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Proc Natl Acad Sci U S A
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2012
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1.83
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38
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Using multilocus sequence data to define the pneumococcus.
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J Bacteriol
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2005
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1.82
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39
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Stability of serotypes during nasopharyngeal carriage of Streptococcus pneumoniae.
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J Clin Microbiol
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2003
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1.78
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40
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Identification of individuals with gonorrhoea within sexual networks: a population-based study.
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Lancet
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2006
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1.61
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41
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Pneumonia and septicemia caused by Burkholderia thailandensis in the United States.
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J Clin Microbiol
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2006
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1.61
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42
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Multilocus sequence typing of Candida albicans: strategies, data exchange and applications.
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Infect Genet Evol
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2004
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1.59
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43
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Predicting phenotype and emerging strains among Chlamydia trachomatis infections.
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Emerg Infect Dis
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2009
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1.58
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44
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Genetic diversity of Burkholderia pseudomallei isolates in Australia.
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J Clin Microbiol
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2007
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1.56
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45
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Modelling bacterial speciation.
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Philos Trans R Soc Lond B Biol Sci
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2006
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1.55
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46
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Ability of pneumococcal serotypes and clones to cause acute otitis media: implications for the prevention of otitis media by conjugate vaccines.
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Infect Immun
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2004
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1.55
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47
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Enhanced invasiveness of bovine-derived neonatal sequence type 17 group B streptococcus is independent of capsular serotype.
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Clin Infect Dis
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2006
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1.47
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48
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Identification of melioidosis outbreak by multilocus variable number tandem repeat analysis.
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Emerg Infect Dis
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2009
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1.40
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49
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Depleted uranium munitions-where are we now?
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J Radiol Prot
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2002
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1.39
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50
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Diversity of methicillin-resistant Staphylococcus aureus (MRSA) strains isolated from inpatients of 30 hospitals in Orange County, California.
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PLoS One
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2013
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1.37
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51
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Risk factors of Streptococcus suis infection in Vietnam. A case-control study.
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PLoS One
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2011
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1.36
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52
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Influence of recombination and niche separation on the population genetic structure of the pathogen Streptococcus pyogenes.
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Infect Immun
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2002
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1.31
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53
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Group A streptococci from a remote community have novel multilocus genotypes but share emm types and housekeeping alleles with isolates from worldwide sources.
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J Infect Dis
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2004
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1.27
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54
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Emergence of penicillin-nonsusceptible Streptococcus pneumoniae clones expressing serotypes not present in the antipneumococcal conjugate vaccine.
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J Infect Dis
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2004
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1.25
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55
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Using BOX-PCR to exclude a clonal outbreak of melioidosis.
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BMC Infect Dis
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2007
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1.24
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56
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A single multilocus sequence typing (MLST) scheme for seven pathogenic Leptospira species.
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PLoS Negl Trop Dis
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2013
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1.17
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57
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Emergence in Vietnam of Streptococcus pneumoniae resistant to multiple antimicrobial agents as a result of dissemination of the multiresistant Spain(23F)-1 clone.
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Antimicrob Agents Chemother
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2002
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1.14
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58
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Australian and Thai isolates of Burkholderia pseudomallei are distinct by multilocus sequence typing: revision of a case of mistaken identity.
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J Clin Microbiol
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2007
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1.14
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59
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Group A streptococcal infections in Sweden: a comparative study of invasive and noninvasive infections and analysis of dominant T28 emm28 isolates.
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Clin Infect Dis
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2003
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1.13
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60
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Burkholderia pseudomallei in unchlorinated domestic bore water, Tropical Northern Australia.
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Emerg Infect Dis
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2011
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1.13
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61
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A locus contained within a variable region of pneumococcal pathogenicity island 1 contributes to virulence in mice.
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Infect Immun
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2004
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1.12
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62
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Diversity of methicillin-resistant Staphylococcus aureus strains isolated from residents of 26 nursing homes in Orange County, California.
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J Clin Microbiol
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2013
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1.12
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63
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Poor clinical outcome for meningitis caused by Haemophilus influenzae serotype A strains containing the IS1016-bexA deletion.
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J Infect Dis
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2010
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1.03
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64
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Geographical and demographic clustering of gonorrhoea in London.
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Sex Transm Infect
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2007
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1.03
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65
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Molecular characterization of clinical Burkholderia pseudomallei isolates from India.
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Am J Trop Med Hyg
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2011
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1.01
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66
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Changing epidemiologic profile of quinolone-resistant Neisseria gonorrhoeae in London.
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J Infect Dis
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2005
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0.98
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67
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Patient sharing and population genetic structure of methicillin-resistant Staphylococcus aureus.
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Proc Natl Acad Sci U S A
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2012
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0.97
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68
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Differences in methicillin-resistant Staphylococcus aureus strains isolated from pediatric and adult patients from hospitals in a large county in California.
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J Clin Microbiol
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2012
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0.97
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69
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Epidemiological tracking and population assignment of the non-clonal bacterium, Burkholderia pseudomallei.
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PLoS Negl Trop Dis
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2011
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0.97
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70
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Comparison of two multilocus sequence based genotyping schemes for Leptospira species.
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PLoS Negl Trop Dis
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2011
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0.97
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71
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Melioidosis in Birds and Burkholderia pseudomallei Dispersal, Australia.
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Emerg Infect Dis
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2011
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0.96
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72
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Concordance between Neisseria gonorrhoeae genotypes recovered from known sexual contacts.
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J Clin Microbiol
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2007
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0.96
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73
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Bayesian semi-supervised classification of bacterial samples using MLST databases.
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BMC Bioinformatics
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2011
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0.91
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74
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Relative contributions of recombination and mutation to the diversification of the opa gene repertoire of Neisseria gonorrhoeae.
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J Bacteriol
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2008
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0.91
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75
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Melioidosis in New Caledonia.
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Emerg Infect Dis
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2005
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0.90
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76
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Analysis of emergence of quinolone-resistant gonococci in Greece by combined use of Neisseria gonorrhoeae multiantigen sequence typing and multilocus sequence typing.
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J Clin Microbiol
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2011
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0.90
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77
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Predicting high prevalence of community methicillin-resistant Staphylococcus aureus strains in nursing homes.
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Infect Control Hosp Epidemiol
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2013
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0.90
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78
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Identity and prevalence of multilocus sequence typing-defined clones of group A streptococci within a hospital setting.
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J Clin Microbiol
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2005
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0.89
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79
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Identification of multidrug-resistant Streptococcus pneumoniae strains isolated in Poland by multilocus sequence typing.
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Microb Drug Resist
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2003
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0.89
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80
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Distribution of Burkholderia pseudomallei in northern Australia, a land of diversity.
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Appl Environ Microbiol
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2014
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0.88
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81
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Endemic melioidosis in residents of desert region after atypically intense rainfall in central Australia, 2011.
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Emerg Infect Dis
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2015
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0.87
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82
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Melioidosis from contaminated bore water and successful UV sterilization.
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Am J Trop Med Hyg
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2013
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0.87
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83
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Melioidosis as a consequence of sporting activity.
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Am J Trop Med Hyg
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2013
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0.87
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Genomics. The genomic view of bacterial diversification.
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Science
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2011
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0.83
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85
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Effects of Streptococcus pneumoniae strain background on complement resistance.
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PLoS One
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2011
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0.83
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86
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Characterization of German penicillin non-susceptible serotype 23F pneumococci using multilocus sequence typing.
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J Med Microbiol
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2003
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0.83
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87
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Retraction.
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Science
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2002
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0.82
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Predictors of hospitals with endemic community-associated methicillin-resistant Staphylococcus aureus.
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Infect Control Hosp Epidemiol
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2013
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0.80
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89
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Depleted uranium: a new battlefield hazard.
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Lancet
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2002
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0.79
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90
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Multilocus sequence typing scheme for Staphylococcus aureus: revision of the gmk locus.
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J Clin Microbiol
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2012
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0.79
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91
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Superantigenic activity of emm3 Streptococcus pyogenes is abrogated by a conserved, naturally occurring smeZ mutation.
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PLoS One
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2012
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0.78
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92
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Primary ocular melioidosis due to a single genotype of Burkholderia pseudomallei in two cats from Arnhem Land in the Northern Territory of Australia.
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J Feline Med Surg
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2009
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0.78
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Corrigendum: Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland.
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Genome Res
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2017
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0.75
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