PubRank

Riu Yamashita

Author PubWeight™ 49.03‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Complete sequencing and characterization of 21,243 full-length human cDNAs. Nat Genet 2003 7.98
2 Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Genome Res 2005 5.22
3 DBTSS: DataBase of human Transcriptional Start Sites and full-length cDNAs. Nucleic Acids Res 2002 4.29
4 DBTSS, DataBase of Transcriptional Start Sites: progress report 2004. Nucleic Acids Res 2004 3.73
5 DBTSS: database of transcription start sites, progress report 2008. Nucleic Acids Res 2007 3.11
6 T cell receptor stimulation-induced epigenetic changes and Foxp3 expression are independent and complementary events required for Treg cell development. Immunity 2012 2.78
7 Massive transcriptional start site analysis of human genes in hypoxia cells. Nucleic Acids Res 2009 1.60
8 Distinct class of putative "non-conserved" promoters in humans: comparative studies of alternative promoters of human and mouse genes. Genome Res 2007 1.37
9 Cancer gene expression database (CGED): a database for gene expression profiling with accompanying clinical information of human cancer tissues. Nucleic Acids Res 2005 1.35
10 Identification of expressed genes linked to malignancy of human colorectal carcinoma by parametric clustering of quantitative expression data. Genome Biol 2003 1.31
11 Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. Genome Res 2004 1.25
12 BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. J Biomed Semantics 2014 1.12
13 The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications. J Biomed Semantics 2011 0.99
14 Large-scale collection and characterization of promoters of human and mouse genes. In Silico Biol 2004 0.97
15 DBTGR: a database of tunicate promoters and their regulatory elements. Nucleic Acids Res 2006 0.93
16 Genome-wide demethylation during neural differentiation of P19 embryonal carcinoma cells. J Hum Genet 2008 0.93
17 Genome-wide analysis of DNA methylation and expression of microRNAs in breast cancer cells. Int J Mol Sci 2012 0.92
18 Melina II: a web tool for comparisons among several predictive algorithms to find potential motifs from promoter regions. Nucleic Acids Res 2007 0.92
19 Effects of Alu elements on global nucleosome positioning in the human genome. BMC Genomics 2010 0.91
20 Diverse DNA methylation statuses at alternative promoters of human genes in various tissues. DNA Res 2006 0.89
21 RANK signaling induces interferon-stimulated genes in the fetal thymic stroma. Biochem Biophys Res Commun 2011 0.88
22 Intrinsic promoter activities of primary DNA sequences in the human genome. DNA Res 2007 0.84
23 Weak correlation between sequence conservation in promoter regions and in protein-coding regions of human-mouse orthologous gene pairs. BMC Genomics 2008 0.82
24 Predicting promoter activities of primary human DNA sequences. Nucleic Acids Res 2011 0.81
25 Profiling ascidian promoters as the primordial type of vertebrate promoter. BMC Genomics 2011 0.79
26 Characterization of transcription start sites of putative non-coding RNAs by multifaceted use of massively paralleled sequencer. DNA Res 2010 0.78
27 MicroRNA-126-mediated control of cell fate in B-cell myeloid progenitors as a potential alternative to transcriptional factors. Proc Natl Acad Sci U S A 2013 0.78
28 Spatial and temporal preferences for trans-splicing in Ciona intestinalis revealed by EST-based gene expression analysis. Gene 2008 0.77
29 The Babesia bovis gene and promoter model: an update from full-length EST analysis. BMC Genomics 2014 0.76
30 [Transcriptome analyses and transcriptome databases]. Tanpakushitsu Kakusan Koso 2004 0.75