Published in Curr Protein Pept Sci on September 01, 2011
Accurate prediction of protein catalytic residues by side chain orientation and residue contact density. PLoS One (2012) 0.83
EXIA2: web server of accurate and rapid protein catalytic residue prediction. Biomed Res Int (2014) 0.77
Using catalytic atom maps to predict the catalytic functions present in enzyme active sites. Biochemistry (2012) 0.77
On the packing density of the unbound protein-protein interaction interface and its implications in dynamics. BMC Bioinformatics (2015) 0.76
Sequence Conservation, Radial Distance and Packing Density in Spherical Viral Capsids. PLoS One (2015) 0.75
Prediction of protein subcellular localization. Proteins (2006) 4.46
Three-dimensional reconstruction of brain-wide wiring networks in Drosophila at single-cell resolution. Curr Biol (2010) 4.04
Predicting subcellular localization of proteins for Gram-negative bacteria by support vector machines based on n-peptide compositions. Protein Sci (2004) 3.02
KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns. Nucleic Acids Res (2007) 2.69
Proteinase-activated receptor-1 mediates elastase-induced apoptosis of human lung epithelial cells. Am J Respir Cell Mol Biol (2005) 1.83
(PS)2: protein structure prediction server. Nucleic Acids Res (2006) 1.59
Predicting RNA-binding sites of proteins using support vector machines and evolutionary information. BMC Bioinformatics (2008) 1.39
Protein subcellular localization prediction based on compartment-specific features and structure conservation. BMC Bioinformatics (2007) 1.25
Proportion of solvent-exposed amino acids in a protein and rate of protein evolution. Mol Biol Evol (2007) 1.23
Deriving protein dynamical properties from weighted protein contact number. Proteins (2008) 1.23
Prediction of the bonding states of cysteines using the support vector machines based on multiple feature vectors and cysteine state sequences. Proteins (2004) 1.19
(PS)2-v2: template-based protein structure prediction server. BMC Bioinformatics (2009) 1.15
pKNOT: the protein KNOT web server. Nucleic Acids Res (2007) 1.08
Relationship between protein structures and disulfide-bonding patterns. Proteins (2003) 1.07
A mechanistic stress model of protein evolution accounts for site-specific evolutionary rates and their relationship with packing density and flexibility. BMC Evol Biol (2014) 1.07
Site-specific structural constraints on protein sequence evolutionary divergence: local packing density versus solvent exposure. Mol Biol Evol (2013) 1.07
Relationship between local structural entropy and protein thermostability. Proteins (2004) 1.04
Computational analysis of KRAS mutations: implications for different effects on the KRAS p.G12D and p.G13D mutations. PLoS One (2013) 1.00
Evolutionary information hidden in a single protein structure. Proteins (2012) 0.99
Fine-grained protein fold assignment by support vector machines using generalized npeptide coding schemes and jury voting from multiple-parameter sets. Proteins (2003) 0.95
Prediction of disulfide connectivity from protein sequences. Proteins (2005) 0.94
Amino acid coupling patterns in thermophilic proteins. Proteins (2005) 0.92
Structure-stability-activity relationship in covalently cross-linked N-carbamoyl D-amino acid amidohydrolase and N-acylamino acid racemase. J Mol Biol (2006) 0.90
On the relationship between the protein structure and protein dynamics. Proteins (2008) 0.90
pKNOT v.2: the protein KNOT web server. Nucleic Acids Res (2012) 0.89
Codon-usage bias versus gene conversion in the evolution of yeast duplicate genes. Proc Natl Acad Sci U S A (2006) 0.88
GEM: a Gaussian Evolutionary Method for predicting protein side-chain conformations. Protein Sci (2002) 0.87
Predicting disulfide connectivity patterns. Proteins (2007) 0.86
Crystal structure of Helicobacter pylori formamidase AmiF reveals a cysteine-glutamate-lysine catalytic triad. J Biol Chem (2007) 0.86
Deciphering the preference and predicting the viability of circular permutations in proteins. PLoS One (2012) 0.85
Protein complexity, gene duplicability and gene dispensability in the yeast genome. Gene (2006) 0.84
Computational analysis of a novel mutation in ETFDH gene highlights its long-range effects on the FAD-binding motif. BMC Struct Biol (2011) 0.82
On the relationship between the sequence conservation and the packing density profiles of the protein complexes. Proteins (2013) 0.82
A simple way to compute protein dynamics without a mechanical model. Proteins (2007) 0.82
Detection and alignment of 3D domain swapping proteins using angle-distance image-based secondary structural matching techniques. PLoS One (2010) 0.81
CPred: a web server for predicting viable circular permutations in proteins. Nucleic Acids Res (2012) 0.79
The fragment transformation method to detect the protein structural motifs. Proteins (2006) 0.78
Molecular dynamics simulation of the enhancement of cobra cardiotoxin and E6 protein binding on mixed self-assembled monolayer molecules. Nanotechnology (2006) 0.77
Structural transformations in dinuclear zinc complexes involving Zn-Zn bonds. Chem Commun (Camb) (2007) 0.76
On the packing density of the unbound protein-protein interaction interface and its implications in dynamics. BMC Bioinformatics (2015) 0.76
Deriving correlated motions in proteins from X-ray structure refinement by using TLS parameters. Gene (2012) 0.75
Computing motif correlations in proteins. J Comput Chem (2003) 0.75
Functional investigation of transmembrane helix 3 in H⁺-translocating pyrophosphatase. J Membr Biol (2013) 0.75
A three-coordinate and quadruply bonded Mo-Mo complex. J Am Chem Soc (2006) 0.75
Numerical performance and throughput benchmark for electronic structure calculations in PC-Linux systems with new architectures, updated compilers, and libraries. J Chem Inf Comput Sci (2004) 0.75