Published in IEEE Trans Biomed Eng on July 29, 2011
Detecting and removing inconsistencies between experimental data and signaling network topologies using integer linear programming on interaction graphs. PLoS Comput Biol (2013) 1.01
Fully Automated Complementary DNA Microarray Segmentation using a Novel Fuzzy-based Algorithm. J Med Signals Sens (2015) 0.86
Non Linear Programming (NLP) formulation for quantitative modeling of protein signal transduction pathways. PLoS One (2012) 0.82
What Can Interaction Webs Tell Us About Species Roles? PLoS Comput Biol (2015) 0.80
Network reconstruction based on proteomic data and prior knowledge of protein connectivity using graph theory. PLoS One (2015) 0.77
An evolutionary game approach for determination of the structural conflicts in signed networks. Sci Rep (2016) 0.75
Effect of screening and adjuvant therapy on mortality from breast cancer. N Engl J Med (2005) 16.70
Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum. Science (2011) 15.45
Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE. Nat Biotechnol (2011) 5.46
Effects of mammography screening under different screening schedules: model estimates of potential benefits and harms. Ann Intern Med (2009) 4.60
Association of a leukemic stem cell gene expression signature with clinical outcomes in acute myeloid leukemia. JAMA (2010) 3.25
Non-small cell lung cancer: identifying prognostic imaging biomarkers by leveraging public gene expression microarray data--methods and preliminary results. Radiology (2012) 2.98
Benefits and harms of computed tomography lung cancer screening strategies: a comparative modeling study for the U.S. Preventive Services Task Force. Ann Intern Med (2013) 2.77
Survival analysis of cancer risk reduction strategies for BRCA1/2 mutation carriers. J Clin Oncol (2009) 2.74
Ly6d marks the earliest stage of B-cell specification and identifies the branchpoint between B-cell and T-cell development. Genes Dev (2009) 2.46
Boolean implication networks derived from large scale, whole genome microarray datasets. Genome Biol (2008) 1.91
Hierarchy in somatic mutations arising during genomic evolution and progression of follicular lymphoma. Blood (2013) 1.86
A pluripotency signature predicts histologic transformation and influences survival in follicular lymphoma patients. Blood (2009) 1.74
Extracting binary signals from microarray time-course data. Nucleic Acids Res (2007) 1.67
Discovering biological progression underlying microarray samples. PLoS Comput Biol (2011) 1.65
Genomic and proteomic analysis reveals a threshold level of MYC required for tumor maintenance. Cancer Res (2008) 1.58
Prediction of survival in diffuse large B-cell lymphoma based on the expression of 2 genes reflecting tumor and microenvironment. Blood (2011) 1.41
Glioblastoma multiforme: exploratory radiogenomic analysis by using quantitative image features. Radiology (2014) 1.36
Online tool to guide decisions for BRCA1/2 mutation carriers. J Clin Oncol (2012) 1.35
Prognostic PET 18F-FDG uptake imaging features are associated with major oncogenomic alterations in patients with resected non-small cell lung cancer. Cancer Res (2012) 1.28
Impact of adjuvant therapy and mammography on U.S. mortality from 1975 to 2000: comparison of mortality results from the cisnet breast cancer base case analysis. J Natl Cancer Inst Monogr (2006) 1.23
Improvements in observed and relative survival in follicular grade 1-2 lymphoma during 4 decades: the Stanford University experience. Blood (2013) 1.20
A comparative review of CISNET breast models used to analyze U.S. breast cancer incidence and mortality trends. J Natl Cancer Inst Monogr (2006) 1.15
MiDReG: a method of mining developmentally regulated genes using Boolean implications. Proc Natl Acad Sci U S A (2010) 1.15
Lymphomas that recur after MYC suppression continue to exhibit oncogene addiction. Proc Natl Acad Sci U S A (2011) 1.13
Fast calculation of pairwise mutual information for gene regulatory network reconstruction. Comput Methods Programs Biomed (2009) 1.10
Comparative analysis of 5 lung cancer natural history and screening models that reproduce outcomes of the NLST and PLCO trials. Cancer (2014) 1.08
CytoSPADE: high-performance analysis and visualization of high-dimensional cytometry data. Bioinformatics (2012) 1.04
Incidental extracardiac findings at coronary CT: clinical and economic impact. AJR Am J Roentgenol (2010) 1.01
Breast magnetic resonance image screening and ductal lavage in women at high genetic risk for breast carcinoma. Cancer (2004) 0.99
A simulation model investigating the impact of tumor volume doubling time and mammographic tumor detectability on screening outcomes in women aged 40-49 years. J Natl Cancer Inst (2010) 0.96
A simulation model to predict the impact of prophylactic surgery and screening on the life expectancy of BRCA1 and BRCA2 mutation carriers. Cancer Epidemiol Biomarkers Prev (2012) 0.91
Ductal lavage of fluid-yielding and non-fluid-yielding ducts in BRCA1 and BRCA2 mutation carriers and other women at high inherited breast cancer risk. Cancer Epidemiol Biomarkers Prev (2005) 0.90
Modeling the impact of population screening on breast cancer mortality in the United States. Breast (2011) 0.87
Simulation-based parameter estimation for complex models: a breast cancer natural history modelling illustration. Stat Methods Med Res (2004) 0.87
Simultaneous class discovery and classification of microarray data using spectral analysis. J Comput Biol (2009) 0.86
Bayesian gene set analysis for identifying significant biological pathways. J R Stat Soc Ser C Appl Stat (2011) 0.84
Characterization of patient specific signaling via augmentation of Bayesian networks with disease and patient state nodes. Conf Proc IEEE Eng Med Biol Soc (2009) 0.84
Modeling the transition of lung cancer from early to advanced stage. Cancer Causes Control (2009) 0.83
Opinions of women with high inherited breast cancer risk about prophylactic mastectomy: an initial evaluation from a screening trial including magnetic resonance imaging and ductal lavage. Health Expect (2005) 0.82
Comparing the benefits of screening for breast cancer and lung cancer using a novel natural history model. Cancer Causes Control (2011) 0.80
TreeVis: a MATLAB-based tool for tree visualization. Comput Methods Programs Biomed (2012) 0.78
Quantitative proteomic profiling identifies protein correlates to EGFR kinase inhibition. Mol Cancer Ther (2012) 0.76
Reducing the computational complexity of information theoretic approaches for reconstructing gene regulatory networks. J Comput Biol (2010) 0.75
Feasibility evaluation of an online tool to guide decisions for BRCA1/2 mutation carriers. Fam Cancer (2013) 0.75
Raising the bar for the U.S. Preventive Services Task Force. Ann Intern Med (2014) 0.75
Ductal pattern enhancement on magnetic resonance imaging of the breast due to ductal lavage. Breast J (2007) 0.75
Glioblastoma Multiforme: Exploratory Radiogenomic Analysis by Using Quantitative Image Features. Radiology (2015) 0.75