Published in Brief Bioinform on July 29, 2011
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Phylogenomic analysis of the GIY-YIG nuclease superfamily. BMC Genomics (2006) 1.56
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Molecular phylogenetics of the RrmJ/fibrillarin superfamily of ribose 2'-O-methyltransferases. Gene (2003) 1.54
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Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses. Nucleic Acids Res (2008) 1.49
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A primordial RNA modification enzyme: the case of tRNA (m1A) methyltransferase. Nucleic Acids Res (2004) 1.44
Inference of relationships in the 'twilight zone' of homology using a combination of bioinformatics and site-directed mutagenesis: a case study of restriction endonucleases Bsp6I and PvuII. Nucleic Acids Res (2005) 1.39
Insights into the structure, function and evolution of the radical-SAM 23S rRNA methyltransferase Cfr that confers antibiotic resistance in bacteria. Nucleic Acids Res (2009) 1.38
Bud23 methylates G1575 of 18S rRNA and is required for efficient nuclear export of pre-40S subunits. Mol Cell Biol (2008) 1.38
The structure of M.EcoKI Type I DNA methyltransferase with a DNA mimic antirestriction protein. Nucleic Acids Res (2008) 1.37
Cloning and characterization of tRNA (m1A58) methyltransferase (TrmI) from Thermus thermophilus HB27, a protein required for cell growth at extreme temperatures. Nucleic Acids Res (2003) 1.35
Trm11p and Trm112p are both required for the formation of 2-methylguanosine at position 10 in yeast tRNA. Mol Cell Biol (2005) 1.35
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Common design principles in the spliceosomal RNA helicase Brr2 and in the Hel308 DNA helicase. Mol Cell (2009) 1.32
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YgdE is the 2'-O-ribose methyltransferase RlmM specific for nucleotide C2498 in bacterial 23S rRNA. Mol Microbiol (2009) 1.30
Structural and functional characterization of mitochondrial EndoG, a sugar non-specific nuclease which plays an important role during apoptosis. J Mol Biol (2004) 1.29
YccW is the m5C methyltransferase specific for 23S rRNA nucleotide 1962. J Mol Biol (2008) 1.26
Novel protein fold discovered in the PabI family of restriction enzymes. Nucleic Acids Res (2007) 1.22
The yeast Arr4p ATPase binds the chloride transporter Gef1p when copper is available in the cytosol. J Biol Chem (2005) 1.19
RNA and protein 3D structure modeling: similarities and differences. J Mol Model (2011) 1.19
The yggH gene of Escherichia coli encodes a tRNA (m7G46) methyltransferase. J Bacteriol (2003) 1.18
Identification of a single HNH active site in type IIS restriction endonuclease Eco31I. J Mol Biol (2007) 1.18
Computational methods for prediction of protein-RNA interactions. J Struct Biol (2011) 1.17
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DARS-RNP and QUASI-RNP: new statistical potentials for protein-RNA docking. BMC Bioinformatics (2011) 1.15
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Integrating ELF4 into the circadian system through combined structural and functional studies. HFSP J (2009) 1.13
EXOG, a novel paralog of Endonuclease G in higher eukaryotes. Nucleic Acids Res (2008) 1.13
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Phylogenetic analysis of haloalkane dehalogenases. Proteins (2007) 1.12
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Molecular phylogenetics and comparative modeling of HEN1, a methyltransferase involved in plant microRNA biogenesis. BMC Evol Biol (2006) 1.12
Functional specialization of domains tandemly duplicated within 16S rRNA methyltransferase RsmC. Nucleic Acids Res (2007) 1.11
Evolutionary relationship between different subgroups of restriction endonucleases. J Biol Chem (2002) 1.11
Binding of the low-density lipoprotein by streptococcal collagen-like protein Scl1 of Streptococcus pyogenes. Mol Microbiol (2006) 1.10
Angiogenesis inhibitors specific for methionine aminopeptidase 2 as drugs for malaria and leishmaniasis. J Biomed Sci (2002) 1.09
The PMS2 subunit of human MutLalpha contains a metal ion binding domain of the iron-dependent repressor protein family. J Mol Biol (2008) 1.08
THUMP from archaeal tRNA:m22G10 methyltransferase, a genuine autonomously folding domain. Nucleic Acids Res (2006) 1.04
Novel non-specific DNA adenine methyltransferases. Nucleic Acids Res (2011) 1.04
Structural basis for the methylation of G1405 in 16S rRNA by aminoglycoside resistance methyltransferase Sgm from an antibiotic producer: a diversity of active sites in m7G methyltransferases. Nucleic Acids Res (2010) 1.04
Discovery of a novel restriction endonuclease by genome comparison and application of a wheat-germ-based cell-free translation assay: PabI (5'-GTA/C) from the hyperthermophilic archaeon Pyrococcus abyssi. Nucleic Acids Res (2005) 1.03
Crystal structure of the Escherichia coli 23S rRNA:m5C methyltransferase RlmI (YccW) reveals evolutionary links between RNA modification enzymes. J Mol Biol (2008) 1.02
ModeRNA server: an online tool for modeling RNA 3D structures. Bioinformatics (2011) 1.02
Identification of Lynch syndrome mutations in the MLH1-PMS2 interface that disturb dimerization and mismatch repair. Hum Mutat (2010) 1.02
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STAT1 as a novel therapeutical target in pro-atherogenic signal integration of IFNγ, TLR4 and IL-6 in vascular disease. Cytokine Growth Factor Rev (2011) 1.01
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The yfhQ gene of Escherichia coli encodes a tRNA:Cm32/Um32 methyltransferase. BMC Mol Biol (2006) 1.00
HsdR subunit of the type I restriction-modification enzyme EcoR124I: biophysical characterisation and structural modelling. J Mol Biol (2007) 1.00
Conserved amino acids in each subunit of the heteroligomeric tRNA m1A58 Mtase from Saccharomyces cerevisiae contribute to tRNA binding. Nucleic Acids Res (2007) 1.00
Complete cap 4 formation is not required for viability in Trypanosoma brucei. Eukaryot Cell (2006) 1.00
Analysis of solvent content and oligomeric states in protein crystals--does symmetry matter? Protein Sci (2008) 1.00
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Identification of a new subfamily of HNH nucleases and experimental characterization of a representative member, HphI restriction endonuclease. Proteins (2006) 0.99
New archaeal methyltransferases forming 1-methyladenosine or 1-methyladenosine and 1-methylguanosine at position 9 of tRNA. Nucleic Acids Res (2010) 0.98
RNA Bricks--a database of RNA 3D motifs and their interactions. Nucleic Acids Res (2013) 0.98
Characterization of new DsbB-like thiol-oxidoreductases of Campylobacter jejuni and Helicobacter pylori and classification of the DsbB family based on phylogenomic, structural and functional criteria. Microbiology (2005) 0.98
CompaRNA: a server for continuous benchmarking of automated methods for RNA secondary structure prediction. Nucleic Acids Res (2013) 0.97
REPAIRtoire--a database of DNA repair pathways. Nucleic Acids Res (2010) 0.97
Functional analysis of MmeI from methanol utilizer Methylophilus methylotrophus, a subtype IIC restriction-modification enzyme related to type I enzymes. Appl Environ Microbiol (2008) 0.97
Mutational analysis defines the roles of conserved amino acid residues in the predicted catalytic pocket of the rRNA:m6A methyltransferase ErmC'. J Mol Biol (2003) 0.97
Distribution and frequencies of post-transcriptional modifications in tRNAs. RNA Biol (2014) 0.97
Identification of a new family of putative PD-(D/E)XK nucleases with unusual phylogenomic distribution and a new type of the active site. BMC Genomics (2005) 0.97
Structural model for the multisubunit Type IC restriction-modification DNA methyltransferase M.EcoR124I in complex with DNA. Nucleic Acids Res (2006) 0.97