Published in Environ Microbiol on September 01, 2011
Towards predictive models of the human gut microbiome. J Mol Biol (2014) 1.09
Metabolic and demographic feedbacks shape the emergent spatial structure and function of microbial communities. PLoS Comput Biol (2013) 0.97
Advancing microbial sciences by individual-based modelling. Nat Rev Microbiol (2016) 0.91
Novel multiscale modeling tool applied to Pseudomonas aeruginosa biofilm formation. PLoS One (2013) 0.85
Multicellular computing using conjugation for wiring. PLoS One (2013) 0.84
Repair rather than segregation of damage is the optimal unicellular aging strategy. BMC Biol (2014) 0.81
Novel assay to measure the plasmid mobilizing potential of mixed microbial communities. Front Microbiol (2014) 0.80
Speed of invasion of an expanding population by a horizontally transmitted trait. Genetics (2013) 0.78
Plasmid transfer in biofilms: a perspective on limitations and opportunities. NPJ Biofilms Microbiomes (2016) 0.78
Predictive Modeling of a Batch Filter Mating Process. Front Microbiol (2017) 0.75
Mycelia as a focal point for horizontal gene transfer among soil bacteria. Sci Rep (2016) 0.75
Does efficiency sensing unify diffusion and quorum sensing? Nat Rev Microbiol (2007) 2.92
Modeling nitrous oxide production during biological nitrogen removal via nitrification and denitrification: extensions to the general ASM models. Environ Sci Technol (2011) 2.06
Quality of pathology reports for advanced ovarian cancer: are we missing essential information? An audit of 479 pathology reports from the EORTC-GCG 55971/NCIC-CTG OV13 neoadjuvant trial. Eur J Cancer (2010) 1.57
iDynoMiCS: next-generation individual-based modelling of biofilms. Environ Microbiol (2011) 1.56
Dynamics of development and dispersal in sessile microbial communities: examples from Pseudomonas aeruginosa and Pseudomonas putida model biofilms. FEMS Microbiol Lett (2006) 1.40
Hydration-controlled bacterial motility and dispersal on surfaces. Proc Natl Acad Sci U S A (2010) 1.37
Why is metabolic labour divided in nitrification? Trends Microbiol (2006) 1.32
Particle-based multidimensional multispecies biofilm model. Appl Environ Microbiol (2004) 1.26
Limited diffusive fluxes of substrate facilitate coexistence of two competing bacterial strains. FEMS Microbiol Ecol (2008) 1.20
Characterization of an autotrophic nitrogen-removing biofilm from a highly loaded lab-scale rotating biological contactor. Appl Environ Microbiol (2003) 1.18
Aggregate size and architecture determine microbial activity balance for one-stage partial nitritation and anammox. Appl Environ Microbiol (2009) 1.02
Use of game-theoretical methods in biochemistry and biophysics. J Biol Phys (2008) 1.01
The porous surface model, a novel experimental system for online quantitative observation of microbial processes under unsaturated conditions. Appl Environ Microbiol (2008) 0.99
Start-up of autotrophic nitrogen removal reactors via sequential biocatalyst addition. Environ Sci Technol (2004) 0.94
Generalized voronoi tessellation as a model of two-dimensional cell tissue dynamics. Bull Math Biol (2010) 0.94
Heterotrophic activity compromises autotrophic nitrogen removal in membrane-aerated biofilms: results of a modeling study. Water Res (2007) 0.92
Nitrogen removal from digested black water by one-stage partial nitritation and anammox. Environ Sci Technol (2009) 0.92
Impact of metal sorption and internalization on nitrification inhibition. Environ Sci Technol (2003) 0.92
Conjugal TOL transfer from Pseudomonas putida to Pseudomonas aeruginosa: effects of restriction proficiency, toxicant exposure, cell density ratios, and conjugation detection method on observed transfer efficiencies. Appl Environ Microbiol (2005) 0.90
Presence, distribution, and diversity of iron-oxidizing bacteria at a landfill leachate-impacted groundwater surface water interface. FEMS Microbiol Ecol (2009) 0.88
An individual-based approach to explain plasmid invasion in bacterial populations. FEMS Microbiol Ecol (2010) 0.87
Effect of nickel and cadmium speciation on nitrification inhibition. Environ Sci Technol (2002) 0.87
Cooperation and cheating in microbial exoenzyme production--theoretical analysis for biotechnological applications. Biotechnol J (2010) 0.87
Redox-stratification controlled biofilm (ReSCoBi) for completely autotrophic nitrogen removal: the effect of co- versus counter-diffusion on reactor performance. Biotechnol Bioeng (2007) 0.86
High diversity among environmental Escherichia coli isolates from a bovine feedlot. Appl Environ Microbiol (2004) 0.86
Transcriptome dynamics of Pseudomonas putida KT2440 under water stress. Appl Environ Microbiol (2011) 0.86
Sequential aeration of membrane-aerated biofilm reactors for high-rate autotrophic nitrogen removal: experimental demonstration. Environ Sci Technol (2010) 0.85
Optimizing experimental design to estimate ammonia and nitrite oxidation biokinetic parameters from batch respirograms. Water Res (2005) 0.85
Biodegradation in a partially saturated sand matrix: compounding effects of water content, bacterial spatial distribution, and motility. Environ Sci Technol (2010) 0.84
Novel assay to assess permissiveness of a soil microbial community toward receipt of mobile genetic elements. Appl Environ Microbiol (2010) 0.84
TOL plasmid carriage enhances biofilm formation and increases extracellular DNA content in Pseudomonas putida KT2440. FEMS Microbiol Lett (2010) 0.84
Saturation mutagenesis of Burkholderia cepacia R34 2,4-dinitrotoluene dioxygenase at DntAc valine 350 for synthesizing nitrohydroquinone, methylhydroquinone, and methoxyhydroquinone. Appl Environ Microbiol (2004) 0.84
Effects of heat-activated persulfate oxidation on soil microorganisms. Water Res (2007) 0.84
Saturation mutagenesis of 2,4-DNT dioxygenase of Burkholderia sp. strain DNT for enhanced dinitrotoluene degradation. Biotechnol Bioeng (2005) 0.83
Reductive transformation of TNT by Escherichia coli: pathway description. Appl Microbiol Biotechnol (2004) 0.83
α-1-antitrypsin variants and the proteinase/antiproteinase imbalance in chronic obstructive pulmonary disease. Am J Physiol Lung Cell Mol Physiol (2015) 0.83
Long-term manure exposure increases soil bacterial community potential for plasmid uptake. Environ Microbiol Rep (2014) 0.82
Structure and activity of lacustrine sediment bacteria involved in nutrient and iron cycles. FEMS Microbiol Ecol (2011) 0.82
Comparison of nitrification inhibition by metals in batch and continuous flow reactors. Water Res (2004) 0.82
Evaluation on the microbial interactions of anaerobic ammonium oxidizers and heterotrophs in Anammox biofilm. Water Res (2012) 0.81
Biokinetic characterization of the acceleration phase in autotrophic ammonia oxidation. Water Environ Res (2008) 0.81
Bench-scale evaluation of in situ bioremediation strategies for soil at a former manufactured gas plant site. Environ Toxicol Chem (2005) 0.81
The Pressurized Porous Surface Model: an improved tool to study bacterial behavior under a wide range of environmentally relevant matric potentials. J Microbiol Methods (2010) 0.81
Pseudomonad swarming motility is restricted to a narrow range of high matric water potentials. Appl Environ Microbiol (2012) 0.80
A new extant respirometric assay to estimate intrinsic growth parameters applied to study plasmid metabolic burden. Biotechnol Bioeng (2010) 0.80
Sequentially aerated membrane biofilm reactors for autotrophic nitrogen removal: microbial community composition and dynamics. Microb Biotechnol (2013) 0.79
TNT and nitroaromatic compounds are chemoattractants for Burkholderia cepacia R34 and Burkholderia sp. strain DNT. Appl Microbiol Biotechnol (2005) 0.79
Nitritation performance and biofilm development of co- and counter-diffusion biofilm reactors: modeling and experimental comparison. Water Res (2009) 0.79
Effect of long-term exposure, biogenic substrate presence, and electron acceptor conditions on the biodegradation of multiple substituted benzoates and phenolates. Water Res (2005) 0.79
Evaluation of bioaugmentation with entrapped degrading cells as a soil remediation technology. Environ Sci Technol (2010) 0.79
Reductive transformation of TNT by Escherichia coli resting cells: kinetic analysis. Appl Microbiol Biotechnol (2005) 0.79
A mathematical model for growth and osmoregulation in halophilic bacteria. Microbiology (2008) 0.78
Sampling methods to determine the spatial gradients and flux of arsenic at a groundwater seepage zone. Environ Toxicol Chem (2006) 0.78
Intestinal versus external growth conditions change the surficial properties in a collection of environmental Escherichia coli isolates. Environ Sci Technol (2006) 0.78
Inoculum effects on community composition and nitritation performance of autotrophic nitrifying biofilm reactors with counter-diffusion geometry. Environ Microbiol (2010) 0.78
A critical comparison of extant batch respirometric and substrate depletion assays for estimation of nitrification biokinetics. Biotechnol Bioeng (2008) 0.78
Seasonal arsenic accumulation in stream sediments at a groundwater discharge zone. Environ Sci Technol (2013) 0.77
The effect of hydroxylamine on the activity and aggregate structure of autotrophic nitrifying bioreactor cultures. Biotechnol Bioeng (2009) 0.77
Conditions for partial nitrification in biofilm reactors and a kinetic explanation. Biotechnol Bioeng (2009) 0.77
Colony morphology and transcriptome profiling of Pseudomonas putida KT2440 and its mutants deficient in alginate or all EPS synthesis under controlled matric potentials. Microbiologyopen (2014) 0.77
Biomass characteristics in three sequencing batch reactors treating a wastewater containing synthetic organic chemicals. Water Res (2005) 0.77
Critical assessment of extracellular polymeric substances extraction methods from mixed culture biomass. Water Res (2013) 0.77
Efficient total nitrogen removal in an ammonia gas biofilter through high-rate OLAND. Environ Sci Technol (2012) 0.76
Protein nanoarrays for high-resolution patterning of bacteria on gold surfaces. Methods Mol Biol (2011) 0.76
NAD(P)H:flavin mononucleotide oxidoreductase inactivation during 2,4,6-trinitrotoluene reduction. Appl Environ Microbiol (2002) 0.76
Evaluation of a rapid physical-chemical method for the determination of extant soluble COD. Water Res (2002) 0.76
Reply to comment on "Modeling nitrous oxide production during biological nitrogen removal via nitrification and denitrification: extensions to the general asm models". Environ Sci Technol (2013) 0.75
Explaining bacterial dispersion on leaf surfaces with an individual-based model (PHYLLOSIM). PLoS One (2013) 0.75
Antecedent growth conditions alter retention of environmental Escherichia coli isolates in transiently wetted porous media. Environ Sci Technol (2008) 0.75
Relative efficacy of intrinsic and extant parameters for modeling biodegradation of synthetic organic compounds in activated sludge: dynamic systems. Water Environ Res (2004) 0.75
Seasonal and spatial variations in microbial activity at various phylogenetic resolutions at a groundwater - surface water interface. Can J Microbiol (2014) 0.75
Sensitivity analysis of autotrophic N removal by a granule based bioreactor: Influence of mass transfer versus microbial kinetics. Bioresour Technol (2012) 0.75
Relative efficacy of intrinsic and extant parameters for modeling biodegradation of synthetic organic compounds in activated sludge: steady-state systems. Water Environ Res (2003) 0.75
Oxidation of aminonitrotoluenes by 2,4-DNT dioxygenase of Burkholderia sp. strain DNT. Biotechnol Bioeng (2006) 0.75
Enhancing the formation and shear resistance of nitrifying biofilms on membranes by surface modification. Water Res (2009) 0.75
Aeration strategies to mitigate nitrous oxide emissions from single-stage nitritation/anammox reactors. Environ Sci Technol (2014) 0.75
Evaluating alternate biokinetic models for trace pollutant cometabolism. Environ Sci Technol (2015) 0.75
Nitritation performance in membrane-aerated biofilm reactors differs from conventional biofilm systems. Water Res (2010) 0.75
Comparison of a type curve and a least-squared errors method to estimate biofilm kinetic parameters. Water Res (2003) 0.75
An improved cell recovery method for iron oxidizing bacterial (IOB) enrichments. J Microbiol Methods (2007) 0.75
A model framework to describe growth-linked biodegradation of trace-level pollutants in the presence of coincidental carbon substrates and microbes. Environ Sci Technol (2014) 0.75
Suppression of nitrite-oxidizing bacteria in intermittently membrane-aerated biofilms: a model-based explanation. Environ Sci Technol (2017) 0.75