Published in Environ Microbiol on October 26, 2011
A multifactor analysis of fungal and bacterial community structure in the root microbiome of mature Populus deltoides trees. PLoS One (2013) 1.11
Complete genome sequence analysis of Nocardia brasiliensis HUJEG-1 reveals a saprobic lifestyle and the genes needed for human pathogenesis. PLoS One (2013) 1.07
Metaproteogenomic insights beyond bacterial response to naphthalene exposure and bio-stimulation. ISME J (2012) 0.96
A Resource Allocation Trade-Off between Virulence and Proliferation Drives Metabolic Versatility in the Plant Pathogen Ralstonia solanacearum. PLoS Pathog (2016) 0.91
Complete genome sequence of the endophytic bacterium Burkholderia sp. strain KJ006. J Bacteriol (2012) 0.89
Time-series metagenomic analysis reveals robustness of soil microbiome against chemical disturbance. DNA Res (2015) 0.87
Microbial Toluene Removal in Hypoxic Model Constructed Wetlands Occurs Predominantly via the Ring Monooxygenation Pathway. Appl Environ Microbiol (2015) 0.84
Genome analysis and physiological comparison of Alicycliphilus denitrificans strains BC and K601(T.). PLoS One (2013) 0.83
Spatial patterns of microbial diversity and activity in an aged creosote-contaminated site. ISME J (2014) 0.82
Genomic evidence reveals the extreme diversity and wide distribution of the arsenic-related genes in Burkholderiales. PLoS One (2014) 0.82
The impact of microbial biotransformation of catechin in enhancing the allelopathic effects of Rhododendron formosanum. PLoS One (2013) 0.82
Molecular mechanisms underlying the close association between soil Burkholderia and fungi. ISME J (2015) 0.81
Genome and Phenotype Microarray Analyses of Rhodococcus sp. BCP1 and Rhodococcus opacus R7: Genetic Determinants and Metabolic Abilities with Environmental Relevance. PLoS One (2015) 0.81
Arhodomonas sp. strain Seminole and its genetic potential to degrade aromatic compounds under high-salinity conditions. Appl Environ Microbiol (2014) 0.79
Permanent draft genome sequence of Comamonas testosteroni KF-1. Stand Genomic Sci (2013) 0.78
Illumina-based analysis the microbial diversity associated with Thalassia hemprichii in Xincun Bay, South China Sea. Ecotoxicology (2015) 0.78
Temporal variation selects for diet-microbe co-metabolic traits in the gut of Gorilla spp. ISME J (2015) 0.78
An uncultivated nitrate-reducing member of the genus Herminiimonas degrades toluene. Appl Environ Microbiol (2014) 0.77
Identification of bacterial communities in sediments of Poyang Lake, the largest freshwater lake in China. Springerplus (2016) 0.77
Biochemical and genetic basis of indole-3-acetic acid (auxin phytohormone) degradation by the plant growth promoting rhizobacterium Paraburkholderia phytofirmans PsJN. Appl Environ Microbiol (2016) 0.76
Potential mechanisms of effects of serum-derived bovine immunoglobulin/protein isolate therapy in patients with diarrhea-predominant irritable bowel syndrome. Physiol Rep (2017) 0.75
Hierarchy of Carbon Source Utilization in Soil Bacteria: Hegemonic Preference for Benzoate in Complex Aromatic Compound Mixtures Degraded by Cupriavidus pinatubonensis Strain JMP134. Appl Environ Microbiol (2015) 0.75
Next-generation pyrosequencing analysis of microbial biofilm communities on granular activated carbon in treatment of oil sands process-affected water. Appl Environ Microbiol (2015) 0.75
Assigning ecological roles to the populations belonging to a phenanthrene-degrading bacterial consortium using omic approaches. PLoS One (2017) 0.75
Enhanced biodegradation of mixed PAHs by mutated naphthalene 1,2-dioxygenase encoded by Pseudomonas putida strain KD6 isolated from petroleum refinery waste. 3 Biotech (2017) 0.75
Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility. Proc Natl Acad Sci U S A (2006) 3.07
The ubiquitin-domain protein HERP forms a complex with components of the endoplasmic reticulum associated degradation pathway. J Mol Biol (2005) 2.04
Proteasomal degradation is transcriptionally controlled by TCF11 via an ERAD-dependent feedback loop. Mol Cell (2010) 2.01
Metabolic reconstruction of aromatic compounds degradation from the genome of the amazing pollutant-degrading bacterium Cupriavidus necator JMP134. FEMS Microbiol Rev (2008) 1.45
The COP9 signalosome: at the interface between signal transduction and ubiquitin-dependent proteolysis. J Cell Sci (2002) 1.44
Transferring substrates to the 26S proteasome. Trends Biochem Sci (2003) 1.37
A poke into the diversity and associations within human anterior nare microbial communities. ISME J (2010) 1.37
The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae. BMC Genomics (2008) 1.34
Bacterial metabolism of polychlorinated biphenyls. J Mol Microbiol Biotechnol (2008) 1.33
The complete multipartite genome sequence of Cupriavidus necator JMP134, a versatile pollutant degrader. PLoS One (2010) 1.31
Comparing the anterior nare bacterial community of two discrete human populations using Illumina amplicon sequencing. Environ Microbiol (2014) 1.30
Polyubiquitin substrates allosterically activate their own degradation by the 26S proteasome. Nat Struct Mol Biol (2009) 1.30
Adsorption studies of the herbicide simazine in agricultural soils of the Aconcagua valley, central Chile. Chemosphere (2008) 1.29
Polychlorinated biphenyl-degrading microbial communities in soils and sediments. Curr Opin Microbiol (2002) 1.28
Uch2/Uch37 is the major deubiquitinating enzyme associated with the 26S proteasome in fission yeast. J Mol Biol (2004) 1.28
Intermediate-type 20 S proteasomes in HeLa cells: "asymmetric" subunit composition, diversity and adaptation. J Mol Biol (2007) 1.27
IncP-1ε Plasmids are Important Vectors of Antibiotic Resistance Genes in Agricultural Systems: Diversification Driven by Class 1 Integron Gene Cassettes. Front Microbiol (2012) 1.16
A holistic view of nitrogen acquisition in plants. J Exp Bot (2011) 1.11
From PCBs to highly toxic metabolites by the biphenyl pathway. Environ Microbiol (2004) 1.10
Tobacco smoke mediated induction of sinonasal microbial biofilms. PLoS One (2011) 1.09
Assessment of toluene/biphenyl dioxygenase gene diversity in benzene-polluted soils: links between benzene biodegradation and genes similar to those encoding isopropylbenzene dioxygenases. Appl Environ Microbiol (2006) 1.06
Ubxd1 is a novel co-factor of the human p97 ATPase. Int J Biochem Cell Biol (2008) 1.03
Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibrated microarray system. Environ Microbiol (2012) 1.03
Novel lineages of Prochlorococcus thrive within the oxygen minimum zone of the eastern tropical South Pacific. Environ Microbiol Rep (2010) 1.03
New ATPase regulators--p97 goes to the PUB. Int J Biochem Cell Biol (2009) 1.02
Quorum sensing and indole-3-acetic acid degradation play a role in colonization and plant growth promotion of Arabidopsis thaliana by Burkholderia phytofirmans PsJN. Mol Plant Microbe Interact (2013) 1.02
Importance of different tfd genes for degradation of chloroaromatics by Ralstonia eutropha JMP134. J Bacteriol (2002) 1.01
Genome sequences of Alicycliphilus denitrificans strains BC and K601T. J Bacteriol (2011) 1.01
Mammalian 26S proteasomes remain intact during protein degradation. Cell (2008) 1.00
Mangrove microniches determine the structural and functional diversity of enriched petroleum hydrocarbon-degrading consortia. FEMS Microbiol Ecol (2010) 0.99
A Lux-like quorum sensing system in the extreme acidophile Acidithiobacillus ferrooxidans. Biol Res (2005) 0.99
Strain-specific colitis susceptibility in IL10-deficient mice depends on complex gut microbiota-host interactions. Inflamm Bowel Dis (2012) 0.98
Metagenomics reveals diversity and abundance of meta-cleavage pathways in microbial communities from soil highly contaminated with jet fuel under air-sparging bioremediation. Environ Microbiol (2009) 0.98
Metaproteogenomic insights beyond bacterial response to naphthalene exposure and bio-stimulation. ISME J (2012) 0.96
Herp regulates Hrd1-mediated ubiquitylation in a ubiquitin-like domain-dependent manner. J Biol Chem (2010) 0.96
New bacterial pathway for 4- and 5-chlorosalicylate degradation via 4-chlorocatechol and maleylacetate in Pseudomonas sp. strain MT1. J Bacteriol (2003) 0.96
Validating T-RFLP as a sensitive and high-throughput approach to assess bacterial diversity patterns in human anterior nares. FEMS Microbiol Ecol (2012) 0.96
Effects of the plant growth-promoting bacterium Burkholderia phytofirmans PsJN throughout the life cycle of Arabidopsis thaliana. PLoS One (2013) 0.95
A novel pathway for mineralization of the thiocarbamate herbicide molinate by a defined bacterial mixed culture. Environ Microbiol (2003) 0.94
Comparative evaluation of establishing a human gut microbial community within rodent models. Gut Microbes (2012) 0.94
Functional gene diversity analysis in BTEX contaminated soils by means of PCR-SSCP DNA fingerprinting: comparative diversity assessment against bacterial isolates and PCR-DNA clone libraries. Environ Microbiol (2004) 0.93
Second acyl homoserine lactone production system in the extreme acidophile Acidithiobacillus ferrooxidans. Appl Environ Microbiol (2007) 0.92
Metabolic networks, microbial ecology and 'omics' technologies: towards understanding in situ biodegradation processes. Environ Microbiol (2010) 0.92
Alternative primer sets for PCR detection of genotypes involved in bacterial aerobic BTEX degradation: distribution of the genes in BTEX degrading isolates and in subsurface soils of a BTEX contaminated industrial site. J Microbiol Methods (2005) 0.92
Kraft mill residues effects on Monterey pine growth and soil microbial activity. J Environ Qual (2002) 0.92
The homogentisate and homoprotocatechuate central pathways are involved in 3- and 4-hydroxyphenylacetate degradation by Burkholderia xenovorans LB400. PLoS One (2011) 0.91
A gene cluster involved in degradation of substituted salicylates via ortho cleavage in Pseudomonas sp. strain MT1 encodes enzymes specifically adapted for transformation of 4-methylcatechol and 3-methylmuconate. J Bacteriol (2006) 0.90
Chlorobenzoate inhibits growth and induces stress proteins in the PCB-degrading bacterium Burkholderia xenovorans LB400. Arch Microbiol (2007) 0.90
Pseudomonas reinekei sp. nov., Pseudomonas moorei sp. nov. and Pseudomonas mohnii sp. nov., novel species capable of degrading chlorosalicylates or isopimaric acid. Int J Syst Evol Microbiol (2007) 0.87
Characterization of copper-resistant bacteria and bacterial communities from copper-polluted agricultural soils of central Chile. BMC Microbiol (2012) 0.87
Characterization of a multicopper oxidase gene cluster in Phanerochaete chrysosporium and evidence of altered splicing of the mco transcripts. Microbiology (2004) 0.87
Ubiquitin domain proteins in disease. BMC Biochem (2007) 0.86
Substrate specificity and expression of three 2,3-dihydroxybiphenyl 1,2-dioxygenases from Rhodococcus globerulus strain P6. J Bacteriol (2003) 0.86
The temporal dynamics of bacterial communities across human anterior nares. Environ Microbiol Rep (2011) 0.86
Characterization of the metabolically modified heavy metal-resistant Cupriavidus metallidurans strain MSR33 generated for mercury bioremediation. PLoS One (2011) 0.86
Elucidation of in situ polycyclic aromatic hydrocarbon degradation by functional metaproteomics (protein-SIP). Proteomics (2013) 0.85
Generation of novel-substrate-accepting biphenyl dioxygenases through segmental random mutagenesis and identification of residues involved in enzyme specificity. Appl Environ Microbiol (2006) 0.85
Ubiquitin system: JAMMing in the name of the lid. Curr Biol (2002) 0.84
Rational engineering of the regioselectivity of TecA tetrachlorobenzene dioxygenase for the transformation of chlorinated toluenes. Microbiology (2003) 0.84
Microorganisms degrading chlorobenzene via a meta-cleavage pathway harbor highly similar chlorocatechol 2,3-dioxygenase-encoding gene clusters. Arch Microbiol (2004) 0.83
Response to (chloro)biphenyls of the polychlorobiphenyl-degrader Burkholderia xenovorans LB400 involves stress proteins also induced by heat shock and oxidative stress. FEMS Microbiol Lett (2006) 0.83
Difference in kinetic behaviour of catechol 2,3-dioxygenase variants from a polluted environment. Microbiology (2004) 0.83
Genome analysis and physiological comparison of Alicycliphilus denitrificans strains BC and K601(T.). PLoS One (2013) 0.83
The tissue-specific Rep8/UBXD6 tethers p97 to the endoplasmic reticulum membrane for degradation of misfolded proteins. PLoS One (2011) 0.83
Inoculum selection is crucial to ensure operational stability in anaerobic digestion. Appl Microbiol Biotechnol (2014) 0.83
Results of treatment with azacitidine in patients aged ≥ 75 years included in the Spanish Registry of Myelodysplastic Syndromes. Leuk Lymphoma (2013) 0.83
Single residues dictate the co-evolution of dual esterases: MCP hydrolases from the α/β hydrolase family. Biochem J (2013) 0.83
Gulosibacter molinativorax ON4T molinate hydrolase, a novel cobalt-dependent amidohydrolase. J Bacteriol (2011) 0.83
Genomic and functional analyses of the 2-aminophenol catabolic pathway and partial conversion of its substrate into picolinic acid in Burkholderia xenovorans LB400. PLoS One (2013) 0.83
Degradation of chloroaromatics by Pseudomonas putida GJ31: assembled route for chlorobenzene degradation encoded by clusters on plasmid pKW1 and the chromosome. Microbiology (2009) 0.83
Two angular dioxygenases contribute to the metabolic versatility of dibenzofuran-degrading Rhodococcus sp. strain HA01. Appl Environ Microbiol (2008) 0.83
trans-Dienelactone hydrolase from Pseudomonas reinekei MT1, a novel zinc-dependent hydrolase. Biochem Biophys Res Commun (2008) 0.83
Enhancement of the microbial community biomass and diversity during air sparging bioremediation of a soil highly contaminated with kerosene and BTEX. Appl Microbiol Biotechnol (2009) 0.82
Simazine application inhibits nitrification and changes the ammonia-oxidizing bacterial communities in a fertilized agricultural soil. FEMS Microbiol Ecol (2011) 0.82
Strict and direct transcriptional repression of the pobA gene by benzoate avoids 4-hydroxybenzoate degradation in the pollutant degrader bacterium Cupriavidus necator JMP134. Environ Microbiol (2011) 0.82
Bioremediation of petroleum hydrocarbons: catabolic genes, microbial communities, and applications. Appl Microbiol Biotechnol (2014) 0.82
Novel metal-binding site of Pseudomonas reinekei MT1 trans-dienelactone hydrolase. Biochem Biophys Res Commun (2009) 0.81
The copy number of the catabolic plasmid pJP4 affects growth of Ralstonia eutropha JMP134 (pJP4) on 3-chlorobenzoate. FEMS Microbiol Lett (2002) 0.81
Mineralization of PCBs by the genetically modified strain Cupriavidus necator JMS34 and its application for bioremediation of PCBs in soil. Appl Microbiol Biotechnol (2010) 0.81
Draft Genome Sequence of Pseudomonas veronii Strain 1YdBTEX2. Genome Announc (2013) 0.81
Novel insights into the interplay between peripheral reactions encoded by xyl genes and the chlorocatechol pathway encoded by tfd genes for the degradation of chlorobenzoates by Ralstonia eutropha JMP134. Microbiology (2002) 0.80
Amplified functional DNA restriction analysis to determine catechol 2,3-dioxygenase gene diversity in soil bacteria. J Microbiol Methods (2003) 0.80
Regulation of human insulin gene transcription by the immunosuppressive drugs cyclosporin A and tacrolimus at concentrations that inhibit calcineurin activity and involving the transcription factor CREB. Naunyn Schmiedebergs Arch Pharmacol (2003) 0.80
Antioxidant compounds improved PCB-degradation by Burkholderia xenovorans strain LB400. Enzyme Microb Technol (2011) 0.80
Aromatic compounds degradation plays a role in colonization of Arabidopsis thaliana and Acacia caven by Cupriavidus pinatubonensis JMP134. Antonie Van Leeuwenhoek (2011) 0.80
Bioaugmentation with Pseudomonas sp. strain MHP41 promotes simazine attenuation and bacterial community changes in agricultural soils. FEMS Microbiol Ecol (2010) 0.80
Molecular detection and diversity of novel diterpenoid dioxygenase DitA1 genes from proteobacterial strains and soil samples. Environ Microbiol (2007) 0.80