Published in Ann N Y Acad Sci on October 01, 2011
Immune regulation during helminth infections. PLoS Pathog (2013) 0.95
The history of ecoimmunology and its integration with disease ecology. Integr Comp Biol (2014) 0.85
Contrasting patterns of polymorphism and selection in bacterial-sensing toll-like receptor 4 in two house mouse subspecies. Ecol Evol (2014) 0.78
Measuring the immune system of the three-spined stickleback - investigating natural variation by quantifying immune expression in the laboratory and the wild. Mol Ecol Resour (2015) 0.78
Towards the conservation of endangered avian species: a recombinant West Nile Virus vaccine results in increased humoral and cellular immune responses in Japanese Quail (Coturnix japonica). PLoS One (2013) 0.76
Badger macrophages fail to produce nitric oxide, a key anti-mycobacterial effector molecule. Sci Rep (2017) 0.75
Modeling a Superorganism - Considerations Regarding the Use of "Dirty" Mice in Biomedical Research . Yale J Biol Med (2017) 0.75
QIIME allows analysis of high-throughput community sequencing data. Nat Methods (2010) 85.34
Microbial ecology: human gut microbes associated with obesity. Nature (2006) 36.98
Metagenomic analysis of the human distal gut microbiome. Science (2006) 29.76
Evolution of mammals and their gut microbes. Science (2008) 21.40
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proc Natl Acad Sci U S A (2010) 19.48
Removing noise from pyrosequenced amplicons. BMC Bioinformatics (2011) 13.45
Detecting novel associations in large data sets. Science (2011) 10.60
Local macrophage proliferation, rather than recruitment from the blood, is a signature of TH2 inflammation. Science (2011) 8.53
Genetically distinct subsets within ANCA-associated vasculitis. N Engl J Med (2012) 6.93
microRNA-155 regulates the generation of immunoglobulin class-switched plasma cells. Immunity (2007) 6.72
Sex differences in the gut microbiome drive hormone-dependent regulation of autoimmunity. Science (2013) 5.75
A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms. Nature (2004) 5.24
Competence and competition: the challenge of becoming a long-lived plasma cell. Nat Rev Immunol (2006) 5.22
Intestinal bacterial colonization induces mutualistic regulatory T cell responses. Immunity (2011) 4.86
Foxp3+ follicular regulatory T cells control the germinal center response. Nat Med (2011) 4.83
Species interactions in a parasite community drive infection risk in a wildlife population. Science (2010) 4.66
Energy-balance studies reveal associations between gut microbes, caloric load, and nutrient absorption in humans. Am J Clin Nutr (2011) 4.60
Helminth parasites--masters of regulation. Immunol Rev (2004) 4.54
Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease. Proc Natl Acad Sci U S A (2011) 4.53
Innate and adaptive immunity cooperate flexibly to maintain host-microbiota mutualism. Science (2009) 4.45
Conserved shifts in the gut microbiota due to gastric bypass reduce host weight and adiposity. Sci Transl Med (2013) 4.15
Tissue-resident macrophages. Nat Immunol (2013) 4.09
Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla. Proc Natl Acad Sci U S A (2009) 4.09
Diversity and dialogue in immunity to helminths. Nat Rev Immunol (2011) 3.72
Suppression of allergic airway inflammation by helminth-induced regulatory T cells. J Exp Med (2005) 3.63
Reversible microbial colonization of germ-free mice reveals the dynamics of IgA immune responses. Science (2010) 3.53
Human SNP links differential outcomes in inflammatory and infectious disease to a FOXO3-regulated pathway. Cell (2013) 3.49
Use of axenic animals in studying the adaptation of mammals to their commensal intestinal microbiota. Semin Immunol (2006) 3.48
IL-4 dependent alternatively-activated macrophages have a distinctive in vivo gene expression phenotype. BMC Immunol (2002) 3.44
Decomposing health: tolerance and resistance to parasites in animals. Philos Trans R Soc Lond B Biol Sci (2009) 3.40
Accelerated intestinal epithelial cell turnover: a new mechanism of parasite expulsion. Science (2005) 3.32
IL-33, a potent inducer of adaptive immunity to intestinal nematodes. J Immunol (2008) 3.31
Alternative activation is an innate response to injury that requires CD4+ T cells to be sustained during chronic infection. J Immunol (2007) 3.25
Crosstalk between B lymphocytes, microbiota and the intestinal epithelium governs immunity versus metabolism in the gut. Nat Med (2011) 3.06
FcgammaRIIb controls bone marrow plasma cell persistence and apoptosis. Nat Immunol (2007) 3.04
Helminth immunoregulation: the role of parasite secreted proteins in modulating host immunity. Mol Biochem Parasitol (2009) 2.95
A CD8+ T cell transcription signature predicts prognosis in autoimmune disease. Nat Med (2010) 2.88
Pseudomonas aeruginosa population diversity and turnover in cystic fibrosis chronic infections. Am J Respir Crit Care Med (2011) 2.88
Like will to like: abundances of closely related species can predict susceptibility to intestinal colonization by pathogenic and commensal bacteria. PLoS Pathog (2010) 2.79
The intestinal microbiota affect central levels of brain-derived neurotropic factor and behavior in mice. Gastroenterology (2011) 2.71
B-cell-depleting induction therapy and acute cellular rejection. N Engl J Med (2009) 2.56
Helminth secretions induce de novo T cell Foxp3 expression and regulatory function through the TGF-β pathway. J Exp Med (2010) 2.54
Chitinase and Fizz family members are a generalized feature of nematode infection with selective upregulation of Ym1 and Fizz1 by antigen-presenting cells. Infect Immun (2005) 2.51
Macrophages in chronic type 2 inflammation have a novel phenotype characterized by the abundant expression of Ym1 and Fizz1 that can be partly replicated in vitro. Immunol Lett (2003) 2.42
Taxonomic metagenome sequence assignment with structured output models. Nat Methods (2011) 2.34
CD11c depletion severely disrupts Th2 induction and development in vivo. J Exp Med (2010) 2.26
Beyond stem cells: self-renewal of differentiated macrophages. Science (2013) 2.23
Removal of regulatory T cell activity reverses hyporesponsiveness and leads to filarial parasite clearance in vivo. J Immunol (2005) 2.17
Copy number of FCGR3B, which is associated with systemic lupus erythematosus, correlates with protein expression and immune complex uptake. J Exp Med (2008) 2.13
Rituximab for remission maintenance in relapsing antineutrophil cytoplasmic antibody-associated vasculitis. Arthritis Rheum (2012) 2.05
Acquisition of a multifunctional IgA+ plasma cell phenotype in the gut. Nature (2011) 2.04
Helminth infections and host immune regulation. Clin Microbiol Rev (2012) 2.02
Loss of function of a lupus-associated FcgammaRIIb polymorphism through exclusion from lipid rafts. Nat Med (2005) 2.01
Divergent, coexisting Pseudomonas aeruginosa lineages in chronic cystic fibrosis lung infections. Am J Respir Crit Care Med (2015) 2.00
Type 2 immunity and wound healing: evolutionary refinement of adaptive immunity by helminths. Nat Rev Immunol (2013) 1.96
FcgammaRIIb balances efficient pathogen clearance and the cytokine-mediated consequences of sepsis. J Exp Med (2004) 1.95
The structural basis for serotype-specific neutralization of dengue virus by a human antibody. Sci Transl Med (2012) 1.95
The Trichuris muris system: a paradigm of resistance and susceptibility to intestinal nematode infection. Adv Parasitol (2004) 1.93
Mast cells disrupt epithelial barrier function during enteric nematode infection. Proc Natl Acad Sci U S A (2003) 1.92
Immune responses that adapt the intestinal mucosa to commensal intestinal bacteria. Immunology (2005) 1.89
The secretome of the filarial parasite, Brugia malayi: proteomic profile of adult excretory-secretory products. Mol Biochem Parasitol (2008) 1.89
Muc5ac: a critical component mediating the rejection of enteric nematodes. J Exp Med (2011) 1.88
Suppressor of cytokine signaling (SOCS)1 is a key determinant of differential macrophage activation and function. J Leukoc Biol (2011) 1.82
The nature and consequences of coinfection in humans. J Infect (2011) 1.82
Phylogeny and geography predict pathogen community similarity in wild primates and humans. Proc Biol Sci (2008) 1.76
Expansion and activation of CD4(+)CD25(+) regulatory T cells in Heligmosomoides polygyrus infection. Eur J Immunol (2007) 1.75
Alarming dendritic cells for Th2 induction. J Exp Med (2008) 1.75
A multicenter survey of rituximab therapy for refractory antineutrophil cytoplasmic antibody-associated vasculitis. Arthritis Rheum (2009) 1.74
Microarray analysis of human leucocyte subsets: the advantages of positive selection and rapid purification. BMC Genomics (2007) 1.74
Depletion of murine intestinal microbiota: effects on gut mucosa and epithelial gene expression. PLoS One (2011) 1.74
IL-4 directly signals tissue-resident macrophages to proliferate beyond homeostatic levels controlled by CSF-1. J Exp Med (2013) 1.73
SIGN-R1 contributes to protection against lethal pneumococcal infection in mice. J Exp Med (2004) 1.73
Animal defenses against infectious agents: is damage control more important than pathogen control. PLoS Biol (2008) 1.64
Th2 cytokines are associated with reduced worm burdens in a human intestinal helminth infection. J Infect Dis (2003) 1.64
Malaria-filaria coinfection in mice makes malarial disease more severe unless filarial infection achieves patency. J Infect Dis (2004) 1.63
Helminth products bypass the need for TSLP in Th2 immune responses by directly modulating dendritic cell function. Proc Natl Acad Sci U S A (2009) 1.63
Host-bacterial coevolution and the search for new drug targets. Curr Opin Chem Biol (2008) 1.63
Predicting and manipulating cardiac drug inactivation by the human gut bacterium Eggerthella lenta. Science (2013) 1.62
The genetic basis of inbreeding avoidance in house mice. Curr Biol (2007) 1.61
Structures of an MHC class I molecule from B21 chickens illustrate promiscuous peptide binding. Immunity (2007) 1.60
Distinct bone marrow-derived and tissue-resident macrophage lineages proliferate at key stages during inflammation. Nat Commun (2013) 1.58
Helminth-induced CD19+CD23hi B cells modulate experimental allergic and autoimmune inflammation. Eur J Immunol (2010) 1.58
Peptide motifs of the single dominantly expressed class I molecule explain the striking MHC-determined response to Rous sarcoma virus in chickens. Proc Natl Acad Sci U S A (2006) 1.55
Systemic lupus erythematosus-associated defects in the inhibitory receptor FcgammaRIIb reduce susceptibility to malaria. Proc Natl Acad Sci U S A (2007) 1.55
Analysis of a wild mouse promoter variant reveals a novel role for FcγRIIb in the control of the germinal center and autoimmunity. J Exp Med (2012) 1.55
ISAG/IUIS-VIC Comparative MHC Nomenclature Committee report, 2005. Immunogenetics (2006) 1.52
Intestinal microbial diversity during early-life colonization shapes long-term IgE levels. Cell Host Microbe (2013) 1.51
F4/80+ alternatively activated macrophages control CD4+ T cell hyporesponsiveness at sites peripheral to filarial infection. J Immunol (2006) 1.48
Gene expression profiling of CD8+ T cells predicts prognosis in patients with Crohn disease and ulcerative colitis. J Clin Invest (2011) 1.47
Expansion of Foxp3+ regulatory T cells in mice infected with the filarial parasite Brugia malayi. J Immunol (2008) 1.47
Is it time for a metagenomic basis of therapeutics? Science (2012) 1.45
Reversible epigenetic down-regulation of MHC molecules by devil facial tumour disease illustrates immune escape by a contagious cancer. Proc Natl Acad Sci U S A (2013) 1.45