Published in PLoS One on November 16, 2011
A global optimization approach to multi-polarity sentiment analysis. PLoS One (2015) 1.27
Computational prediction of the localization of microRNAs within their pre-miRNA. Nucleic Acids Res (2013) 0.94
MiRmat: mature microRNA sequence prediction. PLoS One (2012) 0.88
Computational Characterization of Exogenous MicroRNAs that Can Be Transferred into Human Circulation. PLoS One (2015) 0.86
Computational methods for ab initio detection of microRNAs. Front Genet (2012) 0.86
MiRduplexSVM: A High-Performing MiRNA-Duplex Prediction and Evaluation Methodology. PLoS One (2015) 0.81
Feature Selection Has a Large Impact on One-Class Classification Accuracy for MicroRNAs in Plants. Adv Bioinformatics (2016) 0.80
miReader: Discovering Novel miRNAs in Species without Sequenced Genome. PLoS One (2013) 0.79
MicroRNAs and drought responses in sugarcane. Front Plant Sci (2015) 0.79
Computational Identification of Dengue Virus MicroRNA-Like Structures and their Cellular Targets. Bioinform Biol Insights (2014) 0.78
The impact of feature selection on one and two-class classification performance for plant microRNAs. PeerJ (2016) 0.77
MatPred: Computational Identification of Mature MicroRNAs within Novel Pre-MicroRNAs. Biomed Res Int (2015) 0.77
Improved Pre-miRNA Classification by Reducing the Effect of Class Imbalance. Biomed Res Int (2015) 0.77
miRLocator: Machine Learning-Based Prediction of Mature MicroRNAs within Plant Pre-miRNA Sequences. PLoS One (2015) 0.76
Improving classification of mature microRNA by solving class imbalance problem. Sci Rep (2016) 0.75
Hemoglobin enhances miRNA-144 expression and autophagic activation mediated inflammation of microglia via mTOR pathway. Sci Rep (2017) 0.75
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MicroRNA gene expression deregulation in human breast cancer. Cancer Res (2005) 27.56
A uniform system for microRNA annotation. RNA (2003) 20.28
An analysis of human microRNA and disease associations. PLoS One (2008) 5.21
MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features. Nucleic Acids Res (2007) 3.69
Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine. BMC Bioinformatics (2005) 3.69
Active turnover modulates mature microRNA activity in Caenorhabditis elegans. Nature (2009) 3.03
MicroRNA biogenesis and function in plants. FEBS Lett (2005) 3.02
Identification of clustered microRNAs using an ab initio prediction method. BMC Bioinformatics (2005) 2.76
Human microRNA prediction through a probabilistic co-learning model of sequence and structure. Nucleic Acids Res (2005) 2.48
De novo SVM classification of precursor microRNAs from genomic pseudo hairpins using global and intrinsic folding measures. Bioinformatics (2007) 2.27
microPred: effective classification of pre-miRNAs for human miRNA gene prediction. Bioinformatics (2009) 2.11
Combining multi-species genomic data for microRNA identification using a Naive Bayes classifier. Bioinformatics (2006) 1.82
MiRPara: a SVM-based software tool for prediction of most probable microRNA coding regions in genome scale sequences. BMC Bioinformatics (2011) 1.38
MatureBayes: a probabilistic algorithm for identifying the mature miRNA within novel precursors. PLoS One (2010) 1.21
Mammalian microRNA prediction through a support vector machine model of sequence and structure. PLoS One (2007) 1.20
Prediction of novel precursor miRNAs using a context-sensitive hidden Markov model (CSHMM). BMC Bioinformatics (2010) 1.11
PlantMiRNAPred: efficient classification of real and pseudo plant pre-miRNAs. Bioinformatics (2011) 1.07
Using a kernel density estimation based classifier to predict species-specific microRNA precursors. BMC Bioinformatics (2008) 0.94
Plant microRNAs and their role in defense against viruses: a bioinformatics approach. BMC Plant Biol (2010) 0.92
Complete genome sequence of citrus huanglongbing bacterium, 'Candidatus Liberibacter asiaticus' obtained through metagenomics. Mol Plant Microbe Interact (2009) 3.33
The gene expression profiles of primary and metastatic melanoma yields a transition point of tumor progression and metastasis. BMC Med Genomics (2008) 3.11
SLAF-seq: an efficient method of large-scale de novo SNP discovery and genotyping using high-throughput sequencing. PLoS One (2013) 2.36
Regulation of NF-kappaB inhibitor IkappaBalpha and viral replication by a KSHV microRNA. Nat Cell Biol (2010) 2.33
Enriched white matter connectivity networks for accurate identification of MCI patients. Neuroimage (2010) 1.79
High-affinity nitrate transport in roots of Arabidopsis depends on expression of the NAR2-like gene AtNRT3.1. Plant Physiol (2006) 1.35
Survey of Computational Algorithms for MicroRNA Target Prediction. Curr Genomics (2009) 1.31
D-galactose-caused life shortening in Drosophila melanogaster and Musca domestica is associated with oxidative stress. Biogerontology (2004) 1.21
Simple sequence-based kernels do not predict protein-protein interactions. Bioinformatics (2010) 1.16
Improving performance of mammalian microRNA target prediction. BMC Bioinformatics (2010) 1.13
Interdisciplinary dialogue for education, collaboration, and innovation: intelligent Biology and Medicine in and beyond 2013. BMC Genomics (2013) 1.11
Two-tiered approach identifies a network of cancer and liver disease-related genes regulated by miR-122. J Biol Chem (2011) 1.11
Prediction of microRNAs associated with human diseases based on weighted k most similar neighbors. PLoS One (2013) 1.11
Diversity and plasticity of the intracellular plant pathogen and insect symbiont "Candidatus Liberibacter asiaticus" as revealed by hypervariable prophage genes with intragenic tandem repeats. Appl Environ Microbiol (2011) 1.09
The Arabidopsis AP2/ERF transcription factor RAP2.6 participates in ABA, salt and osmotic stress responses. Gene (2010) 1.08
PlantMiRNAPred: efficient classification of real and pseudo plant pre-miRNAs. Bioinformatics (2011) 1.07
De-regulated microRNAs in pediatric cancer stem cells target pathways involved in cell proliferation, cell cycle and development. PLoS One (2013) 1.06
A Kaposi's sarcoma-associated herpesvirus microRNA and its variants target the transforming growth factor β pathway to promote cell survival. J Virol (2012) 1.06
Measuring gene functional similarity based on group-wise comparison of GO terms. Bioinformatics (2013) 1.05
An anti-nociceptive role for ceftriaxone in chronic neuropathic pain in rats. Pain (2009) 1.05
Competition of shape and interaction patchiness for self-assembling nanoplates. Nat Chem (2013) 1.05
High-throughput immunoassay through in-channel microfluidic patterning. Lab Chip (2012) 1.04
Immunostimulatory effects of CpG-ODN upon dendritic cell-based immunotherapy in a murine melanoma model. J Immunother (2006) 1.01
Genomics in 2012: challenges and opportunities in the next generation sequencing era. BMC Genomics (2012) 1.01
Direct and efficient cellular transformation of primary rat mesenchymal precursor cells by KSHV. J Clin Invest (2012) 1.01
Loci and candidate gene identification for resistance to Sclerotinia sclerotiorum in soybean (Glycine max L. Merr.) via association and linkage maps. Plant J (2015) 1.00
Genomic value prediction for quantitative traits under the epistatic model. BMC Genet (2011) 1.00
Review of peak detection algorithms in liquid-chromatography-mass spectrometry. Curr Genomics (2009) 0.99
An overview of SNP interactions in genome-wide association studies. Brief Funct Genomics (2014) 0.99
A novel insight into Gene Ontology semantic similarity. Genomics (2013) 0.98
Improved real-time PCR detection of 'Candidatus Liberibacter asiaticus' from citrus and psyllid hosts by targeting the intragenic tandem-repeats of its prophage genes. Mol Cell Probes (2012) 0.97
A RAV-like transcription factor controls photosynthesis and senescence in soybean. Planta (2008) 0.95
Analysis of banana transcriptome and global gene expression profiles in banana roots in response to infection by race 1 and tropical race 4 of Fusarium oxysporum f. sp. cubense. BMC Genomics (2013) 0.95
Exome-based analysis for RNA epigenome sequencing data. Bioinformatics (2013) 0.94
Identification of QTL underlying isoflavone contents in soybean seeds among multiple environments. Theor Appl Genet (2009) 0.94
QTL underlying resistance to two HG types of Heterodera glycines found in soybean cultivar 'L-10'. BMC Genomics (2011) 0.94
Identification of QTL underlying vitamin E contents in soybean seed among multiple environments. Theor Appl Genet (2010) 0.93
Inferring the soybean (Glycine max) microRNA functional network based on target gene network. Bioinformatics (2013) 0.93
The receptor like kinase at Rhg1-a/Rfs2 caused pleiotropic resistance to sudden death syndrome and soybean cyst nematode as a transgene by altering signaling responses. BMC Genomics (2012) 0.91
Education, collaboration, and innovation: intelligent biology and medicine in the era of big data. BMC Genomics (2015) 0.90
Brachytherapy management of the retroverted uterus using ultrasound-guided implant applicator placement. Brachytherapy (2005) 0.90
Aberrant methylation profile of 14-3-3 sigma and its reduced transcription/expression levels in Chinese sporadic female breast carcinogenesis. Med Oncol (2009) 0.90
Nitrite transport is mediated by the nitrite-specific high-affinity NitA transporter and by nitrate transporters NrtA, NrtB in Aspergillus nidulans. Fungal Genet Biol (2007) 0.89
Various tolerances to arsenic trioxide between human cortical neurons and leukemic cells. Sci China C Life Sci (2006) 0.88
A Bayesian decision fusion approach for microRNA target prediction. BMC Genomics (2012) 0.88
Patterning of graphene. Nanoscale (2012) 0.87
Facile synthesis of red-emitting lysozyme-stabilized Ag nanoclusters. Nanoscale (2012) 0.87
Genetic Diversity of Xylella fastidiosa Strains from Costa Rica, São Paulo, Brazil, and United States. Phytopathology (2007) 0.87
BIMLR: a method for constructing rooted phylogenetic networks from rooted phylogenetic trees. Gene (2013) 0.86
Enrichment constrained time-dependent clustering analysis for finding meaningful temporal transcription modules. Bioinformatics (2009) 0.86
Quantitative trait loci analysis for the developmental behavior of Soybean (Glycine max L. Merr.). Theor Appl Genet (2005) 0.86
Clustering of gene expression data based on shape similarity. EURASIP J Bioinform Syst Biol (2009) 0.86
LNETWORK: an efficient and effective method for constructing phylogenetic networks. Bioinformatics (2013) 0.86
QTL analysis of soybean seed weight across multi-genetic backgrounds and environments. Theor Appl Genet (2012) 0.86
The endophyte Curtobacterium flaccumfaciens reduces symptoms caused by Xylella fastidiosa in Catharanthus roseus. J Microbiol (2007) 0.85
Roles for a soybean RAV-like orthologue in shoot regeneration and photoperiodicity inferred from transgenic plants. J Exp Bot (2012) 0.85
A Bayesian approach for identifying miRNA targets by combining sequence prediction and gene expression profiling. BMC Genomics (2010) 0.85
Dynamic QTL analysis of linolenic acid content in different developmental stages of soybean seed. Theor Appl Genet (2011) 0.84
Pyramided QTL underlying tolerance to Phytophthora root rot in mega-environments from soybean cultivars 'Conrad' and 'Hefeng 25'. Theor Appl Genet (2010) 0.84
A nonparametric Bayesian approach for clustering bisulfate-based DNA methylation profiles. BMC Genomics (2012) 0.84
Gene regulation, modulation, and their applications in gene expression data analysis. Adv Bioinformatics (2013) 0.84
Rapid and quantitative detection of prostate specific antigen with a quantum dot nanobeads-based immunochromatography test strip. ACS Appl Mater Interfaces (2014) 0.83
Decomposition of RNA methylome reveals co-methylation patterns induced by latent enzymatic regulators of the epitranscriptome. Mol Biosyst (2014) 0.82
Dynamical levels of plasma F(1+2) and D-dimer in patients with acute cerebral infarction during intravenous urokinase thrombolysis. Neurol Res (2009) 0.82
Bayesian parameter estimation for nonlinear modelling of biological pathways. BMC Syst Biol (2011) 0.82
QTL underlying the resistance to soybean aphid (Aphis glycines Matsumura) through isoflavone-mediated antibiosis in soybean cultivar 'Zhongdou 27'. Theor Appl Genet (2011) 0.82
Uncovering gene regulatory networks from time-series microarray data with variational Bayesian structural expectation maximization. EURASIP J Bioinform Syst Biol (2007) 0.82
HEPeak: an HMM-based exome peak-finding package for RNA epigenome sequencing data. BMC Genomics (2015) 0.81
Differential expression analysis of RNA sequencing data by incorporating non-exonic mapped reads. BMC Genomics (2015) 0.81
Evidence for post-translational regulation of NrtA, the Aspergillus nidulans high-affinity nitrate transporter. New Phytol (2007) 0.81
BRCA-Monet: a breast cancer specific drug treatment mode-of-action network for treatment effective prediction using large scale microarray database. BMC Syst Biol (2013) 0.81
Inferring the skeleton cell cycle regulatory network of malaria parasite using comparative genomic and variational Bayesian approaches. Genetica (2007) 0.81
BIMMER: a novel algorithm for detecting differential DNA methylation regions from MBDCap-seq data. BMC Bioinformatics (2014) 0.81
AtNHX3 is a vacuolar K+/H+ antiporter required for low-potassium tolerance in Arabidopsis thaliana. Plant Cell Environ (2010) 0.81
Enhanced therapeutic effects on acute myocardial infarction with multiple intravenous transplantation of human cord blood mononuclear cells. Int J Cardiol (2013) 0.81
The neuroprotective effect of propofol against brain ischemia mediated by the glutamatergic signaling pathway in rats. Neurochem Res (2011) 0.81
Regulation of herpesvirus lifecycle by viral microRNAs. Virulence (2010) 0.81
DBGSA: a novel method of distance-based gene set analysis. J Hum Genet (2012) 0.81
Identification of QTL underlying somatic embryogenesis capacity of immature embryos in soybean (Glycine max (L.) Merr.). Plant Cell Rep (2009) 0.80
Isolation and characterization of a pathogenesis-related protein 10 gene (GmPR10) with induced expression in soybean (Glycine max) during infection with Phytophthora sojae. Mol Biol Rep (2014) 0.80
Impact of epistasis and QTL x environment interaction on the accumulation of seed mass of soybean (Glycine max L. Merr.). Genet Res (Camb) (2008) 0.80
Robust inference of the context specific structure and temporal dynamics of gene regulatory network. BMC Genomics (2010) 0.80
Synergetic effect of α-lipoic acid with keratinocyte growth factor on protecting alveolar epithelial type II cells of rat fetus from hyperoxia -induced injury. Cell Physiol Biochem (2014) 0.80
Optical and structural performance of the Al(1%wtSi)/Zr reflection multilayers in the 17-19nm region. Opt Express (2012) 0.79
SeedsGraph: an efficient assembler for next-generation sequencing data. BMC Med Genomics (2015) 0.79
Numerical characterization of magnetically aligned multiwalled carbon nanotube-Fe3O4 nanoparticle complex. ACS Appl Mater Interfaces (2015) 0.79
Thioredoxin protects fetal type II epithelial cells from hyperoxia-induced injury. Pediatr Pulmonol (2010) 0.79
Effect of amygdalin on the proliferation of hyperoxia-exposed type II alveolar epithelial cells isolated from premature rat. J Huazhong Univ Sci Technolog Med Sci (2004) 0.79
MiRTDL: a deep learning approach for miRNA target prediction. IEEE/ACM Trans Comput Biol Bioinform (2015) 0.79
Characterization and robust classification of EEG signal from image RSVP events with independent time-frequency features. PLoS One (2012) 0.79
Integrating multiple networks for protein function prediction. BMC Syst Biol (2015) 0.79
Effects of hyperoxia on cytoplasmic thioredoxin system in alveolar type epithelial cells of premature rats. J Huazhong Univ Sci Technolog Med Sci (2011) 0.78