Published in Mar Biotechnol (NY) on November 30, 2011
Evolutionary history influences the salinity preference of bacterial taxa in wetland soils. Front Microbiol (2015) 0.83
Culture-dependent and independent studies of microbial diversity in highly copper-contaminated Chilean marine sediments. Microb Ecol (2012) 0.80
Relative contributions of mercury bioavailability and microbial growth rate on net methylmercury production by anaerobic mixed cultures. Environ Sci Process Impacts (2015) 0.78
Diversity and Composition of Sulfate-Reducing Microbial Communities Based on Genomic DNA and RNA Transcription in Production Water of High Temperature and Corrosive Oil Reservoir. Front Microbiol (2017) 0.75
Basic local alignment search tool. J Mol Biol (1990) 659.07
The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol (1987) 266.90
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res (1997) 175.36
MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform (2004) 72.40
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol (1993) 51.00
The uncultured microbial majority. Annu Rev Microbiol (2003) 17.33
Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples. Appl Environ Microbiol (2001) 16.51
DNA recovery from soils of diverse composition. Appl Environ Microbiol (1996) 15.02
Rapid method for direct extraction of DNA from soil and sediments. Appl Environ Microbiol (1991) 10.11
rrndb: the Ribosomal RNA Operon Copy Number Database. Nucleic Acids Res (2001) 9.36
Fast and sensitive silver staining of DNA in polyacrylamide gels. Anal Biochem (1991) 9.26
Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA. Appl Environ Microbiol (1998) 8.58
Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments. Appl Environ Microbiol (1997) 5.01
Phylogeny of dissimilatory sulfite reductases supports an early origin of sulfate respiration. J Bacteriol (1998) 3.94
Microbial Community Composition of Wadden Sea Sediments as Revealed by Fluorescence In Situ Hybridization. Appl Environ Microbiol (1998) 3.30
daime, a novel image analysis program for microbial ecology and biofilm research. Environ Microbiol (2006) 2.88
Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques. Nat Rev Microbiol (2008) 2.56
A strategy for optimizing quality and quantity of DNA extracted from soil. J Microbiol Methods (2001) 2.17
Formation of sphalerite (ZnS) deposits in natural biofilms of sulfate-reducing bacteria. Science (2000) 2.15
Multiple lateral transfers of dissimilatory sulfite reductase genes between major lineages of sulfate-reducing prokaryotes. J Bacteriol (2001) 2.05
Biogeochemical and molecular signatures of anaerobic methane oxidation in a marine sediment. Appl Environ Microbiol (2001) 1.96
Identification of novel bacterial lineages as active members of microbial populations in a freshwater sediment using a rapid RNA extraction procedure and RT-PCR. Microbiology (1999) 1.91
Molecular characterization of sulfate-reducing bacteria in the Guaymas Basin. Appl Environ Microbiol (2003) 1.84
Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics. Proc Natl Acad Sci U S A (2008) 1.81
Oxygen respiration by desulfovibrio species. Annu Rev Microbiol (2000) 1.80
Cultivation-dependent and -independent approaches for determining bacterial diversity in heavy-metal-contaminated soil. Appl Environ Microbiol (2003) 1.78
Physiology, ecology, phylogeny, and genomics of microorganisms capable of syntrophic metabolism. Ann N Y Acad Sci (2008) 1.70
Cloning of the gene encoding the hydrogenase from Desulfovibrio vulgaris (Hildenborough) and determination of the NH2-terminal sequence. Eur J Biochem (1985) 1.56
Variations in archaeal and bacterial diversity associated with the sulfate-methane transition zone in continental margin sediments (Santa Barbara Basin, California). Appl Environ Microbiol (2009) 1.51
Diversity and abundance of sulfate-reducing microorganisms in the sulfate and methane zones of a marine sediment, Black Sea. Environ Microbiol (2007) 1.51
Diversity, activity, and abundance of sulfate-reducing bacteria in saline and hypersaline soda lakes. Appl Environ Microbiol (2007) 1.50
DsrB gene-based DGGE for community and diversity surveys of sulfate-reducing bacteria. J Microbiol Methods (2005) 1.47
Optimization of the single-strand conformation polymorphism (SSCP) technique for detection of point mutations. Hum Mutat (1993) 1.38
Large fraction of dead and inactive bacteria in coastal marine sediments: comparison of protocols for determination and ecological significance. Appl Environ Microbiol (2002) 1.36
Potential interactions of particle-associated anammox bacteria with bacterial and archaeal partners in the Namibian upwelling system. Appl Environ Microbiol (2007) 1.36
Phylogenetic affiliation and quantification of psychrophilic sulfate-reducing isolates in marine Arctic sediments. Appl Environ Microbiol (1999) 1.33
Composition and function of sulfate-reducing prokaryotes in eutrophic and pristine areas of the Florida Everglades. Appl Environ Microbiol (2002) 1.32
Exploiting the genetic and biochemical capacities of bacteria for the remediation of heavy metal pollution. FEMS Microbiol Rev (2002) 1.32
Genetic diversity and expression of the [NiFe] hydrogenase large-subunit gene of Desulfovibrio spp. in environmental samples. Appl Environ Microbiol (1997) 1.31
Diversity and vertical distribution of cultured and uncultured Deltaproteobacteria in an intertidal mud flat of the Wadden Sea. Environ Microbiol (2005) 1.29
Sulfate-reducing bacteria in marine sediment (Aarhus Bay, Denmark): abundance and diversity related to geochemical zonation. Environ Microbiol (2009) 1.27
Spatial structure and activity of sedimentary microbial communities underlying a Beggiatoa spp. mat in a Gulf of Mexico hydrocarbon seep. PLoS One (2010) 1.26
Convenient determination of DNA extraction efficiency using an external DNA recovery standard and quantitative-competitive PCR. J Microbiol Methods (2004) 1.25
Improved 16S rRNA-targeted probe set for analysis of sulfate-reducing bacteria by fluorescence in situ hybridization. J Microbiol Methods (2007) 1.25
Innovative methods for soil DNA purification tested in soils with widely differing characteristics. Appl Environ Microbiol (2008) 1.25
Quantification of microbial communities in near-surface and deeply buried marine sediments on the Peru continental margin using real-time PCR. Environ Microbiol (2006) 1.20
A limited microbial consortium is responsible for extended bioreduction of uranium in a contaminated aquifer. Appl Environ Microbiol (2011) 1.14
Evolution of the syntrophic interaction between Desulfovibrio vulgaris and Methanosarcina barkeri: Involvement of an ancient horizontal gene transfer. Biochem Biophys Res Commun (2006) 1.13
Isolation from estuarine sediments of a Desulfovibrio strain which can grow on lactate coupled to the reductive dehalogenation of 2,4, 6-tribromophenol. Appl Environ Microbiol (1999) 1.12
Molecular characterization of sulfate-reducing bacteria in anaerobic hydrocarbon-degrading consortia and pure cultures using the dissimilatory sulfite reductase (dsrAB) genes. FEMS Microbiol Ecol (2001) 1.11
Desulfovibrio hydrothermalis sp. nov., a novel sulfate-reducing bacterium isolated from hydrothermal vents. Int J Syst Evol Microbiol (2003) 1.10
Phylogeography of sulfate-reducing bacteria among disturbed sediments, disclosed by analysis of the dissimilatory sulfite reductase genes (dsrAB). Appl Environ Microbiol (2005) 1.10
DNA extraction procedure: a critical issue for bacterial diversity assessment in marine sediments. Environ Microbiol (2006) 1.10
Congruent phylogenies of most common small-subunit rRNA and dissimilatory sulfite reductase gene sequences retrieved from estuarine sediments. Appl Environ Microbiol (2001) 1.09
A comparison of stable-isotope probing of DNA and phospholipid fatty acids to study prokaryotic functional diversity in sulfate-reducing marine sediment enrichment slurries. Environ Microbiol (2006) 1.04
Anaerobic microbial communities in Lake Pavin, a unique meromictic lake in France. Appl Environ Microbiol (2005) 1.04
Genome sequence of the mercury-methylating strain Desulfovibrio desulfuricans ND132. J Bacteriol (2011) 1.02
Quantifying expression of a dissimilatory (bi)sulfite reductase gene in petroleum-contaminated marine harbor sediments. Microb Ecol (2007) 1.02
A CARD-FISH protocol for the identification and enumeration of epiphytic bacteria on marine algae. J Microbiol Methods (2005) 1.00
Analysis of diversity and activity of sulfate-reducing bacterial communities in sulfidogenic bioreactors using 16S rRNA and dsrB genes as molecular markers. Appl Environ Microbiol (2006) 0.99
Structure of sediment-associated microbial communities along a heavy-metal contamination gradient in the marine environment. Appl Environ Microbiol (2005) 0.99
Methane and sulfate profiles within the subsurface of a tidal flat are reflected by the distribution of sulfate-reducing bacteria and methanogenic archaea. FEMS Microbiol Ecol (2006) 0.99
Quantitative PCR methods for RNA and DNA in marine sediments: maximizing yield while overcoming inhibition. FEMS Microbiol Ecol (2009) 0.98
Patterns of 15N assimilation and growth of methanotrophic ANME-2 archaea and sulfate-reducing bacteria within structured syntrophic consortia revealed by FISH-SIMS. Environ Microbiol (2009) 0.97
Toxic effects of dissolved heavy metals on Desulfovibrio vulgaris and Desulfovibrio sp. strains. J Hazard Mater (2006) 0.96
Linking microbial community function to phylogeny of sulfate-reducing Deltaproteobacteria in marine sediments by combining stable isotope probing with magnetic-bead capture hybridization of 16S rRNA. Appl Environ Microbiol (2009) 0.94
Diversity of dissimilatory sulfite reductase genes (dsrAB) in a salt marsh impacted by long-term acid mine drainage. Appl Environ Microbiol (2010) 0.94
Diversity of the dsrAB (dissimilatory sulfite reductase) gene sequences retrieved from two contrasting mudflats of the Seine estuary, France. FEMS Microbiol Ecol (2006) 0.91
Rapid detection and quantification of bisulfite reductase genes in oil field samples using real-time PCR. FEMS Microbiol Ecol (2009) 0.91
Vertical distribution and diversity of sulfate-reducing prokaryotes in the Pearl River estuarine sediments, Southern China. FEMS Microbiol Ecol (2009) 0.90
Global transcriptomics analysis of the Desulfovibrio vulgaris change from syntrophic growth with Methanosarcina barkeri to sulfidogenic metabolism. Microbiology (2010) 0.90
Identity and abundance of active sulfate-reducing bacteria in deep tidal flat sediments determined by directed cultivation and CARD-FISH analysis. Environ Microbiol (2008) 0.89
Phylogenetic diversity and distribution of dissimilatory sulfite reductase genes from deep-sea sediment cores. Mar Biotechnol (NY) (2007) 0.89
Dynamics of sulfate-reducing microorganisms (dsrAB genes) in two contrasting mudflats of the Seine estuary (France). Microb Ecol (2005) 0.89
Psychrotolerant sulfate-reducing bacteria from an oxic freshwater sediment, description of Desulfovibrio cuneatus sp. nov. and Desulfovibrio litoralis sp. nov. Syst Appl Microbiol (1998) 0.89
Cadmium accumulation and DNA homology with metal resistance genes in sulfate-reducing bacteria. Appl Environ Microbiol (2005) 0.88
Response of the anaerobe Desulfovibrio vulgaris Hildenborough to oxidative conditions: proteome and transcript analysis. Biochimie (2005) 0.87
Metal removal by sulphate-reducing bacteria from natural and constructed wetlands. J Appl Microbiol (1998) 0.86
Enrichment of anaerobic benzene-degrading microorganisms by in situ microcosms. FEMS Microbiol Ecol (2008) 0.85
Identification of genes that confer sediment fitness to Desulfovibrio desulfuricans G20. Appl Environ Microbiol (2007) 0.85
Quantification of toxic and inhibitory impact of copper and zinc on mixed cultures of sulfate-reducing bacteria. Biotechnol Bioeng (2003) 0.85
Mercury species of sediment and fish in freshwater fish ponds around the Pearl River Delta, PR China: human health risk assessment. Chemosphere (2011) 0.84
Effects of legacy nuclear waste on the compositional diversity and distributions of sulfate-reducing bacteria in a terrestrial subsurface aquifer. FEMS Microbiol Ecol (2006) 0.83
Variation in prokaryotic community composition as a function of resource availability in tidal creek sediments. Appl Environ Microbiol (2008) 0.83
Desulfovibrio frigidus sp. nov. and Desulfovibrio ferrireducens sp. nov., psychrotolerant bacteria isolated from Arctic fjord sediments (Svalbard) with the ability to reduce Fe(III). Int J Syst Evol Microbiol (2006) 0.82
Mercury methylation by a microbial community from sediments of the Adour Estuary (Bay of Biscay, France). Environ Pollut (2008) 0.82
The impact of temperature change on the activity and community composition of sulfate-reducing bacteria in arctic versus temperate marine sediments. Environ Microbiol (2009) 0.81
Inhibition of sulfate-reducing bacteria by metal sulfide formation in bioremediation of acid mine drainage. Environ Toxicol (2002) 0.81
Desulfobulbus japonicus sp. nov., a novel Gram-negative propionate-oxidizing, sulfate-reducing bacterium isolated from an estuarine sediment in Japan. Int J Syst Evol Microbiol (2007) 0.81
Diversity and abundance of Gram positive bacteria in a tidal flat ecosystem. Environ Microbiol (2007) 0.80
Quantification of Desulfovibrio vulgaris dissimilatory sulfite reductase gene expression during electron donor- and electron acceptor-limited growth. Appl Environ Microbiol (2008) 0.79
Competitive touchdown PCR for estimation of Escherichia coli DNA recovery in soil DNA extraction. J Microbiol Methods (2003) 0.78
Enumeration and identification of dominant types of sulfate-reducing bacteria in pulp from a paper-recycling plant: a multiphasic approach. FEMS Microbiol Ecol (2009) 0.78
Isolation of sulfate-reducing bacteria from Tunisian marine sediments and description of Desulfovibrio bizertensis sp. nov. Int J Syst Evol Microbiol (2006) 0.78
Molecular quantification of sulfate-reducing microorganisms (carrying dsrAB genes) by competitive PCR in estuarine sediments. FEMS Microbiol Ecol (2004) 0.77
Bioremediation of benzene, ethylbenzene, and xylenes in groundwater under iron-amended, sulfate-reducing conditions. Environ Toxicol Chem (2007) 0.77
Bioremediation of heavy metal-contaminated soils by sulfate-reducing bacteria. Ann N Y Acad Sci (2008) 0.77
Sulfate reduction, molecular diversity, and copper amendment effects in bacterial communities enriched from sediments exposed to copper mining residues. Environ Toxicol Chem (2010) 0.75
Estimation of the abundance of the cadmium resistance gene cadA in microbial communities in polluted estuary water. Res Microbiol (2001) 0.75
Sulfate reduction in Lake Agmon, Israel. Sci Total Environ (2001) 0.75
Chemical characterization of porewaters in an intertidal mudflat of the Seine estuary: relationship to erosion-deposition cycles. Mar Pollut Bull (2004) 1.17
Potential risks of metal toxicity in contaminated sediments of Deûle river in northern France. J Hazard Mater (2011) 0.88
Variable copy number, intra-genomic heterogeneities and lateral transfers of the 16S rRNA gene in Pseudomonas. PLoS One (2012) 0.82
Polycyclic aromatic hydrocarbons and n-alkanes in sediments of the Upper Scheldt River Basin: contamination levels and source apportionment. J Environ Monit (2009) 0.81
Faecal-indicator bacteria and sedimentary processes in estuarine mudflats (Seine, France). Mar Pollut Bull (2007) 0.80
Impact of copper on the abundance and diversity of sulfate-reducing prokaryotes in two chilean marine sediments. Mar Pollut Bull (2012) 0.79
A report card and quality indicators for the Seine estuary: from scientific approach to operational tool. Mar Pollut Bull (2007) 0.79
Abundance and diversity of copper resistance genes cusA and copA in microbial communities in relation to the impact of copper on Chilean marine sediments. Mar Pollut Bull (2013) 0.78
Evidence of methylmercury production and modification of the microbial community structure in estuary sediments contaminated with wastewater treatment plant effluents. Mar Pollut Bull (2011) 0.76
Profile of trace metals accumulation in core sediment from Seine river estuary (docks basin). Environ Technol (2013) 0.75
Evidence of highly dynamic geochemical behaviour of zinc in the Deûle river (northern France). J Environ Monit (2011) 0.75
Determination of trace levels of dissolved vanadium in seawater by use of synthetic complexing agents and inductively coupled plasma-atomic emission spectroscopy (ICP-AES). Anal Bioanal Chem (2002) 0.75
Biogeochemical factors affecting the distribution, speciation, and transport of Hg species in the Deûle and Lys Rivers (Northern France). Environ Sci Pollut Res Int (2014) 0.75
Dating of sediment record at two contrasting sites of the Seine River using radioactivity data and hydrological time series. J Environ Radioact (2013) 0.75
Preconcentration of total mercury from river water by anion exchange mechanism. Anal Sci (2013) 0.75
Relationships between hydrosedimentary processes and occurrence of mercury-resistant bacteria (merA) in estuary mudflats (Seine, France). Mar Pollut Bull (2008) 0.75
Speciation of mercury in the strongly polluted sediments of the Deûle River (France). J Environ Monit (2012) 0.75
Determination of trace metal complexes by natural organic and inorganic ligands in coastal seawater. Anal Sci (2003) 0.75
Automatic trace metal monitoring station use for early warning and short term events in polluted rivers: application to streams loaded by mining tailing. J Environ Monit (2010) 0.75