Published in Genomics Proteomics Bioinformatics on October 01, 2011
Prediction and functional analysis of the sweet orange protein-protein interaction network. BMC Plant Biol (2014) 0.81
The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res (2004) 54.37
IntAct--open source resource for molecular interaction data. Nucleic Acids Res (2006) 13.82
FLOWERING LOCUS C encodes a novel MADS domain protein that acts as a repressor of flowering. Plant Cell (1999) 12.64
Inparanoid: a comprehensive database of eukaryotic orthologs. Nucleic Acids Res (2005) 9.90
ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks. Bioinformatics (2009) 8.60
The KEGG database. Novartis Found Symp (2002) 6.86
Online predicted human interaction database. Bioinformatics (2005) 6.83
Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs". Genome Res (2001) 5.10
Gramene database in 2010: updates and extensions. Nucleic Acids Res (2010) 2.70
Unequal evolutionary conservation of human protein interactions in interologous networks. Genome Biol (2007) 2.45
A predicted interactome for Arabidopsis. Plant Physiol (2007) 2.41
Mutagenesis of plants overexpressing CONSTANS demonstrates novel interactions among Arabidopsis flowering-time genes. Plant Cell (2000) 2.34
Prediction of functional modules based on comparative genome analysis and Gene Ontology application. Nucleic Acids Res (2005) 2.07
Prediction of yeast protein-protein interaction network: insights from the Gene Ontology and annotations. Nucleic Acids Res (2006) 1.93
Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy. PLoS One (2008) 1.53
Negative epistasis between natural variants of the Saccharomyces cerevisiae MLH1 and PMS1 genes results in a defect in mismatch repair. Proc Natl Acad Sci U S A (2006) 1.50
A network of rice genes associated with stress response and seed development. Proc Natl Acad Sci U S A (2003) 1.47
Determination of the motif responsible for interaction between the rice APETALA1/AGAMOUS-LIKE9 family proteins using a yeast two-hybrid system. Plant Physiol (1999) 1.19
Searching, viewing, and visualizing data in the Biomolecular Interaction Network Database (BIND). Curr Protoc Bioinformatics (2006) 1.16
PRIN: a predicted rice interactome network. BMC Bioinformatics (2011) 1.05
PAIR: the predicted Arabidopsis interactome resource. Nucleic Acids Res (2010) 1.04
Membrane trafficking in plants: new discoveries and approaches. Curr Opin Plant Biol (2004) 1.00
Computational identification of potential molecular interactions in Arabidopsis. Plant Physiol (2009) 0.99
RSLpred: an integrative system for predicting subcellular localization of rice proteins combining compositional and evolutionary information. Proteomics (2009) 0.96
Reconstruction of human protein interolog network using evolutionary conserved network. BMC Bioinformatics (2007) 0.92
SPIDer: Saccharomyces protein-protein interaction database. BMC Bioinformatics (2006) 0.90
Picking out parallels: plant circadian clocks in context. Philos Trans R Soc Lond B Biol Sci (2001) 0.87
High-dose radiation improved local tumor control and overall survival in patients with inoperable/unresectable non-small-cell lung cancer: long-term results of a radiation dose escalation study. Int J Radiat Oncol Biol Phys (2005) 3.32
Rapid and effective diagnosis of tuberculosis and rifampicin resistance with Xpert MTB/RIF assay: a meta-analysis. J Infect (2012) 3.16
Increasing occurrence of antimicrobial-resistant hypervirulent (hypermucoviscous) Klebsiella pneumoniae isolates in China. Clin Infect Dis (2013) 2.91
Nitrogen fixation island and rhizosphere competence traits in the genome of root-associated Pseudomonas stutzeri A1501. Proc Natl Acad Sci U S A (2008) 2.70
Airway delivery of mesenchymal stem cells prevents arrested alveolar growth in neonatal lung injury in rats. Am J Respir Crit Care Med (2009) 2.60
Mitochondrial outer-membrane protein FUNDC1 mediates hypoxia-induced mitophagy in mammalian cells. Nat Cell Biol (2012) 2.56
OX40 costimulation turns off Foxp3+ Tregs. Blood (2007) 2.52
PRIMA-1Met/APR-246 induces wild-type p53-dependent suppression of malignant melanoma tumor growth in 3D culture and in vivo. Cell Cycle (2011) 2.30
A case of restrictive dermopathy with complete chorioamniotic membrane separation caused by a novel homozygous nonsense mutation in the ZMPSTE24 gene. Am J Med Genet A (2009) 2.15
Transcriptomic analysis of Chinese bayberry (Myrica rubra) fruit development and ripening using RNA-Seq. BMC Genomics (2012) 2.07
Three immunomarker support vector machines-based prognostic classifiers for stage IB non-small-cell lung cancer. J Clin Oncol (2009) 1.91
An artificial somatic-autonomic reflex pathway procedure for bladder control in children with spina bifida. J Urol (2005) 1.78
Arsenic transport and transformation associated with MSMA application on a golf course green. J Agric Food Chem (2005) 1.73
A dicentric Y chromosome resulting from pericentric inversion between the centromere and Yq heterochromatin. Taiwan J Obstet Gynecol (2013) 1.72
Immunotherapy reduces vascular amyloid-beta in PDAPP mice. J Neurosci (2008) 1.70
MicroRNA-663 regulates human vascular smooth muscle cell phenotypic switch and vascular neointimal formation. Circ Res (2013) 1.67
P-selectin primes leukocyte integrin activation during inflammation. Nat Immunol (2007) 1.64
Retroperitoneal laparoscopic ureteroureterostomy for retrocaval ureter: report of 7 cases. Urology (2009) 1.57
Complete genome sequence of the nitrogen-fixing and rhizosphere-associated bacterium Pseudomonas stutzeri strain DSM4166. J Bacteriol (2011) 1.46
Are all the miRBase-registered microRNAs true? A structure- and expression-based re-examination in plants. RNA Biol (2012) 1.44
Phylogeny, gene structures, and expression patterns of the ERF gene family in soybean (Glycine max L.). J Exp Bot (2008) 1.44
Overexpression of the soybean GmERF3 gene, an AP2/ERF type transcription factor for increased tolerances to salt, drought, and diseases in transgenic tobacco. J Exp Bot (2009) 1.43
Transrectal sonoelastography in the detection of prostate cancers: a meta-analysis. BJU Int (2012) 1.42
Methotrexate induces cell swelling and necrosis in renal tubular cells. Pediatr Blood Cancer (2006) 1.42
BNArray: an R package for constructing gene regulatory networks from microarray data by using Bayesian network. Bioinformatics (2006) 1.41
Isolation and molecular characterization of the Triticum aestivum L. ethylene-responsive factor 1 (TaERF1) that increases multiple stress tolerance. Plant Mol Biol (2007) 1.40
Functions and application of the AP2/ERF transcription factor family in crop improvement. J Integr Plant Biol (2011) 1.36
Epicardial border zone overexpression of skeletal muscle sodium channel SkM1 normalizes activation, preserves conduction, and suppresses ventricular arrhythmia: an in silico, in vivo, in vitro study. Circulation (2008) 1.32
MiR-146a suppresses tumor growth and progression by targeting EGFR pathway and in a p-ERK-dependent manner in castration-resistant prostate cancer. Prostate (2011) 1.31
Auxin-related gene families in abiotic stress response in Sorghum bicolor. Funct Integr Genomics (2010) 1.25
Intratumoral heterogeneity determines discordant results of diagnostic tests for human epidermal growth factor receptor (HER) 2 in gastric cancer specimens. Cell Biochem Biophys (2012) 1.25
Association study of genetic variants in eight genes/loci with type 2 diabetes in a Han Chinese population. BMC Med Genet (2010) 1.24
Loss-of-function mutations and inducible RNAi suppression of Arabidopsis LCB2 genes reveal the critical role of sphingolipids in gametophytic and sporophytic cell viability. Plant J (2008) 1.22
Mechanisms of renal damage owing to infection. Pediatr Nephrol (2005) 1.21
Optimal spacing of surface electrode arrays for brain-machine interface applications. J Neural Eng (2010) 1.21
Neonatal diabetes mellitus with pancreatic agenesis in an infant with homozygous IPF-1 Pro63fsX60 mutation. Pediatr Diabetes (2009) 1.18
Non-functional paraganglioma of the urinary bladder: a case report. J Med Case Rep (2010) 1.17
Toward microRNA-mediated gene regulatory networks in plants. Brief Bioinform (2011) 1.17
Arabidopsis mutants lacking long chain base phosphate lyase are fumonisin-sensitive and accumulate trihydroxy-18:1 long chain base phosphate. J Biol Chem (2007) 1.15
miR-30-5p functions as a tumor suppressor and novel therapeutic tool by targeting the oncogenic Wnt/β-catenin/BCL9 pathway. Cancer Res (2014) 1.14
P-selectin cell adhesion molecule in inflammation, thrombosis, cancer growth and metastasis. Curr Med Chem (2004) 1.14
Contributions of the visual ventral pathway to long-range apparent motion. Science (2003) 1.13
The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction. Genomics (2007) 1.13
Origin of thermodynamic versus kinetic control of allene hydroboration with 9-borabicyclo[3.3.1]nonane and 10(R)-trimethylsilyl-9-borabicyclo[3.3.2]decane. Org Lett (2009) 1.13
Serum and lymphocyte levels of heat shock protein 70 in aging: a study in the normal Chinese population. Cell Stress Chaperones (2004) 1.12
Sphingolipids in the root play an important role in regulating the leaf ionome in Arabidopsis thaliana. Plant Cell (2011) 1.12
FIZZ1 plays a crucial role in early stage airway remodeling of OVA-induced asthma. J Asthma (2008) 1.11
Circulating level of microparticles and their correlation with arterial elasticity and endothelium-dependent dilation in patients with type 2 diabetes mellitus. Atherosclerosis (2009) 1.11
Radiocarbon dating of charcoal and bone collagen associated with early pottery at Yuchanyan Cave, Hunan Province, China. Proc Natl Acad Sci U S A (2009) 1.10
Intensity-modulated radiation therapy reduces radiation-induced trismus in patients with nasopharyngeal carcinoma: a prospective study with >5 years of follow-up. Cancer (2011) 1.09
Origin and evolutionary analysis of the plant-specific TIFY transcription factor family. Genomics (2011) 1.08
Thermodynamic control of 1,3-boratropic shifts of α- and γ-stannyl-substituted allylboranes: hyperconjugation outweighs steric effects. Org Lett (2011) 1.08
Male genital schwannoma, review of 5 cases. Asian J Androl (2003) 1.08
Primary intrathoracic liposarcoma: a clinicopathologic study and prognostic analysis of 23 cases. J Cardiothorac Surg (2014) 1.08
Weathering of lead bullets and their environmental effects at outdoor shooting ranges. J Environ Qual (2003) 1.08
Occurrence of veterinary antibiotics in animal wastewater and surface water around farms in Jiangsu Province, China. Chemosphere (2010) 1.08
The soybean GmbZIP1 transcription factor enhances multiple abiotic stress tolerances in transgenic plants. Plant Mol Biol (2011) 1.08
Genetic organization of genes encoding phenol hydroxylase, benzoate 1,2-dioxygenase alpha subunit and its regulatory proteins in Acinetobacter calcoaceticus PHEA-2. Curr Microbiol (2003) 1.08
Inhibition of the tumor necrosis factor-alpha pathway is radioprotective for the lung. Clin Cancer Res (2008) 1.07
Tocopherol-associated protein suppresses prostate cancer cell growth by inhibition of the phosphoinositide 3-kinase pathway. Cancer Res (2005) 1.07
Recombinant human endostatin normalizes tumor vasculature and enhances radiation response in xenografted human nasopharyngeal carcinoma models. PLoS One (2012) 1.07
Slit-Robo signaling mediates lymphangiogenesis and promotes tumor lymphatic metastasis. Biochem Biophys Res Commun (2010) 1.06
The regulatory activities of plant microRNAs: a more dynamic perspective. Plant Physiol (2011) 1.05
MicroRNA-mediated signaling involved in plant root development. Biochem Biophys Res Commun (2010) 1.05
PRIN: a predicted rice interactome network. BMC Bioinformatics (2011) 1.05
Mediastinal lymph nodes staging by 18F-FDG PET/CT for early stage non-small cell lung cancer: a multicenter study. Radiother Oncol (2011) 1.04
Genome-wide survey of rice microRNAs and microRNA-target pairs in the root of a novel auxin-resistant mutant. Planta (2009) 1.04
High-throughput degradome sequencing can be used to gain insights into microRNA precursor metabolism. J Exp Bot (2010) 1.04
OX40 controls functionally different T cell subsets and their resistance to depletion therapy. J Immunol (2007) 1.04
Small RNAs in angiosperms: sequence characteristics, distribution and generation. Bioinformatics (2010) 1.04
Serum 25-hydroxyvitamin D concentration and mortality from heart failure and cardiovascular disease, and premature mortality from all-cause in United States adults. Am J Cardiol (2012) 1.03
The predictive role of plasma TGF-beta1 during radiation therapy for radiation-induced lung toxicity deserves further study in patients with non-small cell lung cancer. Lung Cancer (2007) 1.03
Feeding problems reported by parents of young children with type 1 diabetes on insulin pump therapy and their associations with children's glycemic control. Pediatr Diabetes (2009) 1.02
Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.). J Exp Bot (2010) 1.02
Evaluation of three-dose fosfomycin tromethamine in the treatment of patients with urinary tract infections: an uncontrolled, open-label, multicentre study. BMJ Open (2013) 1.02
Assessment of heavy metal contamination in the surrounding soils and surface sediments in Xiawangang River, Qingshuitang District. PLoS One (2013) 1.02
Rational reprogramming of fungal polyketide first-ring cyclization. Proc Natl Acad Sci U S A (2013) 1.02
Field assessment of lead immobilization in a contaminated soil after phosphate application. Sci Total Environ (2003) 1.01
Obesity, emerging risk in China: trend of increasing prevalence of obesity and its association with hypertension and hypercholesterolaemia among the Chinese. Clin Exp Pharmacol Physiol (2004) 1.01
Hybridization assay of hepatitis B virus by QCM peptide nucleic acid biosensor. Biosens Bioelectron (2007) 1.01
Genome sequence of Acinetobacter calcoaceticus PHEA-2, isolated from industry wastewater. J Bacteriol (2011) 1.00
PlantNATsDB: a comprehensive database of plant natural antisense transcripts. Nucleic Acids Res (2011) 1.00
Sleep disordered breathing, daytime symptoms, and functional performance in stable heart failure. Sleep (2010) 1.00
Morphine induces Beclin 1- and ATG5-dependent autophagy in human neuroblastoma SH-SY5Y cells and in the rat hippocampus. Autophagy (2010) 1.00
Platelet-like nanoparticles: mimicking shape, flexibility, and surface biology of platelets to target vascular injuries. ACS Nano (2014) 0.99
Phosphoproteome analysis of the human Chang liver cells using SCX and a complementary mass spectrometric strategy. Proteomics (2008) 0.99
Expression profiling and regulation of genes related to silkworm posterior silk gland development and fibroin synthesis. J Proteome Res (2011) 0.99
Comparative analysis of the complete genome of an Acinetobacter calcoaceticus strain adapted to a phenol-polluted environment. Res Microbiol (2011) 0.98
Characteristics of urinary tract infection pathogens and their in vitro susceptibility to antimicrobial agents in China: data from a multicenter study. BMJ Open (2013) 0.98
Pro-apoptotic actions of exisulind and CP461 in SW480 colon tumor cells involve beta-catenin and cyclin D1 down-regulation. Biochem Pharmacol (2002) 0.98
Mechanism of lovastatin-induced apoptosis in intestinal epithelial cells. Carcinogenesis (2002) 0.97
Mechanisms and modulation of neural cell damage induced by oxidative stress. Physiol Behav (2007) 0.97
Ruptured corpus luteum with hemoperitoneum: case characteristics and demographic changes over time. Taiwan J Obstet Gynecol (2009) 0.97
FGFR4 Gly388Arg polymorphism contributes to prostate cancer development and progression: a meta-analysis of 2618 cases and 2305 controls. BMC Cancer (2011) 0.96
Epstein-Barr virus DNase (BGLF5) induces genomic instability in human epithelial cells. Nucleic Acids Res (2009) 0.96
Quantum-mechanical study of 10-R-9-borabicyclo[3.3.2]decane alkene hydroboration. J Org Chem (2009) 0.96
TGF-beta induces fibroblast activation protein expression; fibroblast activation protein expression increases the proliferation, adhesion, and migration of HO-8910PM [corrected]. Exp Mol Pathol (2009) 0.96