Published in RNA Biol on January 01, 2012
Identification of two small regulatory RNAs linked to virulence in Brucella abortus 2308. Mol Microbiol (2012) 1.01
Daily expression pattern of protein-encoding genes and small noncoding RNAs in synechocystis sp. strain PCC 6803. Appl Environ Microbiol (2014) 0.92
Primary transcriptome map of the hyperthermophilic archaeon Thermococcus kodakarensis. BMC Genomics (2014) 0.90
Riboregulators and the role of Hfq in photosynthetic bacteria. RNA Biol (2014) 0.85
Genome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis - a rich resource to identify new transcripts, proteins and to study gene regulation. BMC Genomics (2016) 0.81
Riboregulation in plant-associated α-proteobacteria. RNA Biol (2014) 0.80
Small Open Reading Frames, Non-Coding RNAs and Repetitive Elements in Bradyrhizobium japonicum USDA 110. PLoS One (2016) 0.75
A Genome-Wide Prediction and Identification of Intergenic Small RNAs by Comparative Analysis in Mesorhizobium huakuii 7653R. Front Microbiol (2017) 0.75
CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III. Nature (2011) 17.38
The genome of the kinetoplastid parasite, Leishmania major. Science (2005) 8.64
Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. Nature (2003) 8.53
The primary transcriptome of the major human pathogen Helicobacter pylori. Nature (2010) 7.70
The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract. Proc Natl Acad Sci U S A (2002) 7.21
The DNA sequence of the human X chromosome. Nature (2005) 6.97
Genome analysis of the platypus reveals unique signatures of evolution. Nature (2008) 5.74
Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq. PLoS Genet (2008) 5.23
Regulation by small RNAs in bacteria: expanding frontiers. Mol Cell (2011) 4.68
Comparative analysis of the complete genome sequence of the plant growth-promoting bacterium Bacillus amyloliquefaciens FZB42. Nat Biotechnol (2007) 4.66
Mutations in DNAH5 cause primary ciliary dyskinesia and randomization of left-right asymmetry. Nat Genet (2002) 4.64
Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota. Nature (2012) 4.42
Fast mapping of short sequences with mismatches, insertions and deletions using index structures. PLoS Comput Biol (2009) 4.24
Mutations in a novel gene, NPHP3, cause adolescent nephronophthisis, tapeto-retinal degeneration and hepatic fibrosis. Nat Genet (2003) 4.14
The genome sequence of Atlantic cod reveals a unique immune system. Nature (2011) 3.99
Whole genome analysis of the marine Bacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter. Environ Microbiol (2006) 3.79
Nephrocystin-5, a ciliary IQ domain protein, is mutated in Senior-Loken syndrome and interacts with RPGR and calmodulin. Nat Genet (2005) 3.55
Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome. Proc Natl Acad Sci U S A (2003) 3.55
Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism. Science (2010) 3.35
The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium. Mol Microbiol (2006) 3.35
Ktu/PF13 is required for cytoplasmic pre-assembly of axonemal dyneins. Nature (2008) 3.28
RNAshapes: an integrated RNA analysis package based on abstract shapes. Bioinformatics (2005) 3.20
SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay. Mol Microbiol (2006) 3.07
The archaeal exosome core is a hexameric ring structure with three catalytic subunits. Nat Struct Mol Biol (2005) 3.07
Genome sequence of the chlorinated compound-respiring bacterium Dehalococcoides species strain CBDB1. Nat Biotechnol (2005) 3.07
Translational control and target recognition by Escherichia coli small RNAs in vivo. Nucleic Acids Res (2007) 3.06
Mutations in the JARID1C gene, which is involved in transcriptional regulation and chromatin remodeling, cause X-linked mental retardation. Am J Hum Genet (2004) 2.99
SNP and haplotype mapping for genetic analysis in the rat. Nat Genet (2008) 2.96
Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA. Genes Dev (2005) 2.93
Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses. Nat Genet (2012) 2.92
DNAH5 mutations are a common cause of primary ciliary dyskinesia with outer dynein arm defects. Am J Respir Crit Care Med (2006) 2.92
Small RNA binding to 5' mRNA coding region inhibits translational initiation. Mol Cell (2008) 2.88
An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803. Proc Natl Acad Sci U S A (2011) 2.84
cis-antisense RNA, another level of gene regulation in bacteria. Microbiol Mol Biol Rev (2011) 2.78
Biochemical and proteomic analysis of the magnetosome membrane in Magnetospirillum gryphiswaldense. Appl Environ Microbiol (2004) 2.74
Two seemingly homologous noncoding RNAs act hierarchically to activate glmS mRNA translation. PLoS Biol (2008) 2.61
BISMA--fast and accurate bisulfite sequencing data analysis of individual clones from unique and repetitive sequences. BMC Bioinformatics (2010) 2.60
Hox cluster disintegration with persistent anteroposterior order of expression in Oikopleura dioica. Nature (2004) 2.54
Processing-independent CRISPR RNAs limit natural transformation in Neisseria meningitidis. Mol Cell (2013) 2.52
A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites. Genes Dev (2007) 2.44
Regulatory RNA in bacterial pathogens. Cell Host Microbe (2010) 2.41
The role of Hfq in bacterial pathogens. Curr Opin Microbiol (2010) 2.40
Chromatin methylation activity of Dnmt3a and Dnmt3a/3L is guided by interaction of the ADD domain with the histone H3 tail. Nucleic Acids Res (2010) 2.39
The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium. Proc Natl Acad Sci U S A (2012) 2.39
DNA methylation analysis of chromosome 21 gene promoters at single base pair and single allele resolution. PLoS Genet (2009) 2.37
Dual RNA-seq of pathogen and host. Nat Rev Microbiol (2012) 2.32
Dynamic link of DNA demethylation, DNA strand breaks and repair in mouse zygotes. EMBO J (2010) 2.30
Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution. Nature (2007) 2.27
Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation. Nat Struct Mol Biol (2009) 2.25
Positive control of swarming, rhamnolipid synthesis, and lipase production by the posttranscriptional RsmA/RsmZ system in Pseudomonas aeruginosa PAO1. J Bacteriol (2004) 2.25
The coiled-coil domain containing protein CCDC40 is essential for motile cilia function and left-right axis formation. Nat Genet (2010) 2.25
Deep sequencing-based discovery of the Chlamydia trachomatis transcriptome. Nucleic Acids Res (2009) 2.20
DNAI2 mutations cause primary ciliary dyskinesia with defects in the outer dynein arm. Am J Hum Genet (2008) 2.17
Helicobacter pylori genome evolution during human infection. Proc Natl Acad Sci U S A (2011) 2.15
A hypervariable 130-kilobase genomic region of Magnetospirillum gryphiswaldense comprises a magnetosome island which undergoes frequent rearrangements during stationary growth. J Bacteriol (2005) 2.13
A conspicuous nickel protein in microbial mats that oxidize methane anaerobically. Nature (2003) 2.10
Deletions and point mutations of LRRC50 cause primary ciliary dyskinesia due to dynein arm defects. Am J Hum Genet (2009) 2.10
An atlas of Hfq-bound transcripts reveals 3' UTRs as a genomic reservoir of regulatory small RNAs. EMBO J (2012) 2.10
Human box C/D snoRNAs with miRNA like functions: expanding the range of regulatory RNAs. Nucleic Acids Res (2010) 2.08
Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria. Genome Biol (2008) 2.06
Activation of gene expression by small RNA. Curr Opin Microbiol (2009) 2.04
Analysis of the host microRNA response to Salmonella uncovers the control of major cytokines by the let-7 family. EMBO J (2011) 2.03
Classification and identification of bacteria by mass spectrometry and computational analysis. PLoS One (2008) 2.03
Evidence for a major role of antisense RNAs in cyanobacterial gene regulation. Mol Syst Biol (2009) 2.02
Identification of regulatory RNAs in Bacillus subtilis. Nucleic Acids Res (2010) 1.99
CCDC103 mutations cause primary ciliary dyskinesia by disrupting assembly of ciliary dynein arms. Nat Genet (2012) 1.99
An antisense RNA inhibits translation by competing with standby ribosomes. Mol Cell (2007) 1.97
An internal antisense RNA regulates expression of the photosynthesis gene isiA. Proc Natl Acad Sci U S A (2006) 1.95
Experimental approaches for the discovery and characterization of regulatory small RNA. Curr Opin Microbiol (2009) 1.92
Recessive HYDIN mutations cause primary ciliary dyskinesia without randomization of left-right body asymmetry. Am J Hum Genet (2012) 1.91
Abstract shapes of RNA. Nucleic Acids Res (2004) 1.90
The genome sequence of an anaerobic aromatic-degrading denitrifying bacterium, strain EbN1. Arch Microbiol (2004) 1.88
Parallel evolution of nacre building gene sets in molluscs. Mol Biol Evol (2009) 1.88
Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate. Science (2010) 1.86
Characterization of a spontaneous nonmagnetic mutant of Magnetospirillum gryphiswaldense reveals a large deletion comprising a putative magnetosome island. J Bacteriol (2003) 1.85
A new Vibrio cholerae sRNA modulates colonization and affects release of outer membrane vesicles. Mol Microbiol (2008) 1.83
Identification of cyanobacterial non-coding RNAs by comparative genome analysis. Genome Biol (2005) 1.82
Experimental approaches to identify non-coding RNAs. Nucleic Acids Res (2006) 1.80
Comparative genome analysis of four magnetotactic bacteria reveals a complex set of group-specific genes implicated in magnetosome biomineralization and function. J Bacteriol (2007) 1.80
Pure multiple RNA secondary structure alignments: a progressive profile approach. IEEE/ACM Trans Comput Biol Bioinform (2006) 1.79
Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA. Mol Microbiol (2009) 1.77
The challenge of regulation in a minimal photoautotroph: non-coding RNAs in Prochlorococcus. PLoS Genet (2008) 1.74
A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome. Mol Microbiol (2007) 1.72