Published in BMC Genomics on November 30, 2011
Application of ITS2 metabarcoding to determine the provenance of pollen collected by honey bees in an agroecosystem. Appl Plant Sci (2015) 1.10
Longitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery. ISME J (2014) 1.06
Structural and functional insights from the metagenome of an acidic hot spring microbial planktonic community in the Colombian Andes. PLoS One (2012) 0.98
Potential benefits of the application of yeast starters in table olive processing. Front Microbiol (2012) 0.89
Diversity and Distribution of Archaea in the Mangrove Sediment of Sundarbans. Archaea (2015) 0.89
Assessment of Microbial Richness in Pelagic Sediment of Andaman Sea by Bacterial Tag Encoded FLX Titanium Amplicon Pyrosequencing (bTEFAP). Indian J Microbiol (2012) 0.89
Analysis of the intestinal microbiota using SOLiD 16S rRNA gene sequencing and SOLiD shotgun sequencing. BMC Genomics (2013) 0.88
16S classifier: a tool for fast and accurate taxonomic classification of 16S rRNA hypervariable regions in metagenomic datasets. PLoS One (2015) 0.84
InCoB celebrates its tenth anniversary as first joint conference with ISCB-Asia. BMC Genomics (2011) 0.84
Gene expression of lactobacilli in murine forestomach biofilms. Microb Biotechnol (2014) 0.83
High-throughput sequencing of 16S rRNA Gene Reveals Substantial Bacterial Diversity on the Municipal Dumpsite. BMC Microbiol (2016) 0.77
Phylogenetic and functional alterations in bacterial community compositions in broiler ceca as a result of mannan oligosaccharide supplementation. Appl Environ Microbiol (2015) 0.76
Characterizing the diversity of active bacteria in soil by comprehensive stable isotope probing of DNA and RNA with H2(18) O. Microbiologyopen (2015) 0.75
ARK: Aggregation of Reads by K-Means for Estimation of Bacterial Community Composition. PLoS One (2015) 0.75
BOTUX: bayesian-like operational taxonomic unit examiner. Int J Comput Biol Drug Des (2014) 0.75
Basic local alignment search tool. J Mol Biol (1990) 659.07
QIIME allows analysis of high-throughput community sequencing data. Nat Methods (2010) 85.34
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol (2009) 77.55
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res (2008) 52.43
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res (2007) 35.65
Obesity alters gut microbial ecology. Proc Natl Acad Sci U S A (2005) 33.66
Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol (2005) 31.06
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics (2008) 29.20
Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proc Natl Acad Sci U S A (1977) 26.08
MEGAN analysis of metagenomic data. Genome Res (2007) 25.29
UniFrac--an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics (2006) 25.13
GenBank. Nucleic Acids Res (2005) 19.25
Integrative analysis of environmental sequences using MEGAN4. Genome Res (2011) 8.60
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree. BMC Bioinformatics (2010) 5.70
Using the metagenomics RAST server (MG-RAST) for analyzing shotgun metagenomes. Cold Spring Harb Protoc (2010) 2.74
MLTreeMap--accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies. BMC Genomics (2010) 2.12
Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana. Science (2007) 9.85
A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Science (2002) 9.59
Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA. Science (2005) 8.14
MetaSim: a sequencing simulator for genomics and metagenomics. PLoS One (2008) 6.54
Whole-genome shotgun assembly and comparison of human genome assemblies. Proc Natl Acad Sci U S A (2004) 6.08
Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome. PLoS One (2008) 4.54
Specificity prediction of adenylation domains in nonribosomal peptide synthetases (NRPS) using transductive support vector machines (TSVMs). Nucleic Acids Res (2005) 4.15
OSLay: optimal syntenic layout of unfinished assemblies. Bioinformatics (2007) 4.10
Reference-guided assembly of four diverse Arabidopsis thaliana genomes. Proc Natl Acad Sci U S A (2011) 2.67
The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus). Genome Res (2009) 2.30
Whole-genome prokaryotic phylogeny. Bioinformatics (2004) 2.26
Phylogenetic analysis of condensation domains in NRPS sheds light on their functional evolution. BMC Evol Biol (2007) 1.97
Visual and statistical comparison of metagenomes. Bioinformatics (2009) 1.94
Evolution of Arabidopsis thaliana microRNAs from random sequences. RNA (2008) 1.50
Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG. BMC Bioinformatics (2011) 1.48
Comparative analysis of four Campylobacterales. Nat Rev Microbiol (2004) 1.41
Identification of plant microRNA homologs. Bioinformatics (2005) 1.35
Constructing splits graphs. IEEE/ACM Trans Comput Biol Bioinform (2006) 1.33
Drawing explicit phylogenetic networks and their integration into SplitsTree. BMC Evol Biol (2008) 1.30
CREST--classification resources for environmental sequence tags. PLoS One (2012) 1.28
COPYCAT: cophylogenetic analysis tool. Bioinformatics (2007) 1.25
Comparison of multiple metagenomes using phylogenetic networks based on ecological indices. ISME J (2010) 1.23
Short clones or long clones? A simulation study on the use of paired reads in metagenomics. BMC Bioinformatics (2010) 1.07
Fast computation of minimum hybridization networks. Bioinformatics (2011) 1.02
LOCAS--a low coverage assembly tool for resequencing projects. PLoS One (2011) 0.99
Tanglegrams for rooted phylogenetic trees and networks. Bioinformatics (2011) 0.94
Analysis of the intestinal microbiota using SOLiD 16S rRNA gene sequencing and SOLiD shotgun sequencing. BMC Genomics (2013) 0.88
Identifying a species tree subject to random lateral gene transfer. J Theor Biol (2013) 0.84
Improved layout of phylogenetic networks. IEEE/ACM Trans Comput Biol Bioinform (2008) 0.82
Filtered Z-closure supernetworks for extracting and visualizing recurrent signal from incongruent gene trees. Syst Biol (2008) 0.82
VisRD--visual recombination detection. Bioinformatics (2004) 0.78
CrossLink: visualization and exploration of sequence relationships between (micro) RNAs. Nucleic Acids Res (2006) 0.75