PubRank

Alice C McHardy

Author PubWeight™ 113.38‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res 2005 29.61
2 GenDB--an open source genome annotation system for prokaryote genomes. Nucleic Acids Res 2003 18.88
3 Use of simulated data sets to evaluate the fidelity of metagenomic processing methods. Nat Methods 2007 7.73
4 Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature 2007 7.42
5 Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins. Proc Natl Acad Sci U S A 2010 7.09
6 Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities. Nat Biotechnol 2006 5.71
7 Defining seasonal marine microbial community dynamics. ISME J 2011 4.61
8 The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins. J Biotechnol 2003 4.40
9 Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence. J Bacteriol 2005 3.12
10 The amphioxus genome illuminates vertebrate origins and cephalochordate biology. Genome Res 2008 3.04
11 High-resolution metagenomics targets specific functional types in complex microbial communities. Nat Biotechnol 2008 2.99
12 Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis. Nat Biotechnol 2006 2.69
13 Complete genome sequence of the myxobacterium Sorangium cellulosum. Nat Biotechnol 2007 2.43
14 Taxonomic metagenome sequence assignment with structured output models. Nat Methods 2011 2.34
15 Complete genome of the mutualistic, N2-fixing grass endophyte Azoarcus sp. strain BH72. Nat Biotechnol 2006 2.28
16 Metagenomics of the Svalbard reindeer rumen microbiome reveals abundance of polysaccharide utilization loci. PLoS One 2012 1.51
17 Taxonomic binning of metagenome samples generated by next-generation sequencing technologies. Brief Bioinform 2012 1.30
18 REGANOR: a gene prediction server for prokaryotic genomes and a database of high quality gene predictions for prokaryotes. Appl Bioinformatics 2006 1.27
19 GISMO--gene identification using a support vector machine for ORF classification. Nucleic Acids Res 2006 1.14
20 Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium. ISME J 2010 1.05
21 High-throughput miRNA and mRNA sequencing of paired colorectal normal, tumor and metastasis tissues and bioinformatic modeling of miRNA-1 therapeutic applications. PLoS One 2013 1.00
22 Detecting patches of protein sites of influenza A viruses under positive selection. Mol Biol Evol 2012 0.95
23 Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology. J Biotechnol 2003 0.87
24 Inferring functional modules of protein families with probabilistic topic models. BMC Bioinformatics 2011 0.81
25 Alignment-free genome tree inference by learning group-specific distance metrics. Genome Biol Evol 2013 0.80
26 Biochemical and bioinformatic methods for elucidating the role of RNA-protein interactions in posttranscriptional regulation. Brief Funct Genomics 2014 0.77
27 Erratum: Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi. Nat Commun 2016 0.76
28 PTree: pattern-based, stochastic search for maximum parsimony phylogenies. PeerJ 2013 0.75