Published in J Mol Cell Biol on April 12, 2012
Big biological data: challenges and opportunities. Genomics Proteomics Bioinformatics (2014) 0.79
The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data. Nat Biotechnol (2004) 16.08
Regulation of cellular metabolism by protein lysine acetylation. Science (2010) 10.55
Activation of the NLRP3 inflammasome by islet amyloid polypeptide provides a mechanism for enhanced IL-1β in type 2 diabetes. Nat Immunol (2010) 6.64
Estimating accuracy of RNA-Seq and microarrays with proteomics. BMC Genomics (2009) 3.87
Association between adverse clinical outcome in human disease caused by novel influenza A H7N9 virus and sustained viral shedding and emergence of antiviral resistance. Lancet (2013) 3.83
Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789. Proc Natl Acad Sci U S A (2007) 3.52
Mechanisms of drug combinations: interaction and network perspectives. Nat Rev Drug Discov (2009) 3.20
Predicting protein-protein interactions based only on sequences information. Proc Natl Acad Sci U S A (2007) 3.06
Human C-reactive protein does not promote atherosclerosis in transgenic rabbits. Circulation (2009) 2.83
AAPM recommendations on dose prescription and reporting methods for permanent interstitial brachytherapy for prostate cancer: report of Task Group 137. Med Phys (2009) 2.62
Exploration of gene-gene interaction effects using entropy-based methods. Eur J Hum Genet (2007) 2.42
Novel biomarkers for pre-diabetes identified by metabolomics. Mol Syst Biol (2012) 2.39
Diagnostic and prognostic implications of microRNAs in human hepatocellular carcinoma. Int J Cancer (2008) 2.35
The unfolded protein response transducer IRE1α prevents ER stress-induced hepatic steatosis. EMBO J (2011) 2.08
An early Ediacaran assemblage of macroscopic and morphologically differentiated eukaryotes. Nature (2011) 1.92
Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization. Proc Natl Acad Sci U S A (2014) 1.91
miR-497 regulates neuronal death in mouse brain after transient focal cerebral ischemia. Neurobiol Dis (2010) 1.89
A novel set of DNA methylation markers in urine sediments for sensitive/specific detection of bladder cancer. Clin Cancer Res (2007) 1.77
AtPID: Arabidopsis thaliana protein interactome database--an integrative platform for plant systems biology. Nucleic Acids Res (2007) 1.76
Generation of PPARγ mono-allelic knockout pigs via zinc-finger nucleases and nuclear transfer cloning. Cell Res (2011) 1.74
Molecular recognition of nitrated fatty acids by PPAR gamma. Nat Struct Mol Biol (2008) 1.67
Differences between human plasma and serum metabolite profiles. PLoS One (2011) 1.61
Covalent peroxisome proliferator-activated receptor gamma adduction by nitro-fatty acids: selective ligand activity and anti-diabetic signaling actions. J Biol Chem (2010) 1.57
Predicting rRNA-, RNA-, and DNA-binding proteins from primary structure with support vector machines. J Theor Biol (2005) 1.51
SysPTM: a systematic resource for proteomic research on post-translational modifications. Mol Cell Proteomics (2009) 1.51
Differentiation and integration: guiding principles for analyzing cognitive change. Dev Sci (2008) 1.51
Refined phylogenetic profiles method for predicting protein-protein interactions. Bioinformatics (2005) 1.50
HIT: linking herbal active ingredients to targets. Nucleic Acids Res (2010) 1.50
The genome of Mesobuthus martensii reveals a unique adaptation model of arthropods. Nat Commun (2013) 1.50
A genome-wide association study identifies GRK5 and RASGRP1 as type 2 diabetes loci in Chinese Hans. Diabetes (2012) 1.47
ITFP: an integrated platform of mammalian transcription factors. Bioinformatics (2008) 1.43
Effective gene targeting in rabbits using RNA-guided Cas9 nucleases. J Mol Cell Biol (2014) 1.41
Prediction of lysine ubiquitination with mRMR feature selection and analysis. Amino Acids (2011) 1.41
Metabolic profiling reveals distinct variations linked to nicotine consumption in humans--first results from the KORA study. PLoS One (2008) 1.40
Structural basis of effector regulation and signal termination in heterotrimeric Galpha proteins. Adv Protein Chem (2007) 1.40
Iodine 125 versus palladium 103 implants for prostate cancer: clinical outcomes and complications. Cancer J (2004) 1.39
Identification of alternatively spliced mRNA variants related to cancers by genome-wide ESTs alignment. Oncogene (2004) 1.39
Peroxisome proliferator-activated receptor delta regulation of miR-15a in ischemia-induced cerebral vascular endothelial injury. J Neurosci (2010) 1.38
GEOGLE: context mining tool for the correlation between gene expression and the phenotypic distinction. BMC Bioinformatics (2009) 1.35
A gradient feature weighted Minimax algorithm for registration of multiple portal images to 3DCT volumes in prostate radiotherapy. Int J Radiat Oncol Biol Phys (2006) 1.35
Human serum metabolic profiles are age dependent. Aging Cell (2012) 1.34
Nitro-oleic acid inhibits angiotensin II-induced hypertension. Circ Res (2010) 1.34
Genomic insights into salt adaptation in a desert poplar. Nat Commun (2013) 1.30
Ligand-activated peroxisome proliferator-activated receptor-gamma protects against ischemic cerebral infarction and neuronal apoptosis by 14-3-3 epsilon upregulation. Circulation (2009) 1.30
Loss of perivascular adipose tissue on peroxisome proliferator-activated receptor-γ deletion in smooth muscle cells impairs intravascular thermoregulation and enhances atherosclerosis. Circulation (2012) 1.30
PPARs and the cardiovascular system. Antioxid Redox Signal (2009) 1.28
A bayesian approach to protein inference problem in shotgun proteomics. J Comput Biol (2009) 1.26
Predicting O-glycosylation sites in mammalian proteins by using SVMs. Comput Biol Chem (2006) 1.25
Vascular smooth muscle cell-selective peroxisome proliferator-activated receptor-gamma deletion leads to hypotension. Circulation (2009) 1.25
Complete sequencing and pan-genomic analysis of Lactobacillus delbrueckii subsp. bulgaricus reveal its genetic basis for industrial yogurt production. PLoS One (2011) 1.24
MicroRNA-1 regulates smooth muscle cell differentiation by repressing Kruppel-like factor 4. Stem Cells Dev (2010) 1.24
Regulation of Rho guanine nucleotide exchange factors by G proteins. Adv Protein Chem (2007) 1.23
Monitoring sleepiness with on-board electrophysiological recordings for preventing sleep-deprived traffic accidents. Clin Neurophysiol (2007) 1.21
miR-10a contributes to retinoid acid-induced smooth muscle cell differentiation. J Biol Chem (2010) 1.21
Improved prediction of lysine acetylation by support vector machines. Protein Pept Lett (2009) 1.20
Major urinary protein-1 increases energy expenditure and improves glucose intolerance through enhancing mitochondrial function in skeletal muscle of diabetic mice. J Biol Chem (2009) 1.20
Quantitative comparison of sarcomeric phosphoproteomes of neonatal and adult rat hearts. Am J Physiol Heart Circ Physiol (2008) 1.20
A highly efficient method to differentiate smooth muscle cells from human embryonic stem cells. Arterioscler Thromb Vasc Biol (2007) 1.20
Vascular endothelial cell-specific microRNA-15a inhibits angiogenesis in hindlimb ischemia. J Biol Chem (2012) 1.19
ASD: a comprehensive database of allosteric proteins and modulators. Nucleic Acids Res (2010) 1.18
Traditional herbal medicine in preventing recurrence after resection of small hepatocellular carcinoma: a multicenter randomized controlled trial. J Integr Med (2013) 1.17
Expression profiling of nuclear receptors in human and mouse embryonic stem cells. Mol Endocrinol (2009) 1.16
Prediction of deleterious non-synonymous SNPs based on protein interaction network and hybrid properties. PLoS One (2010) 1.15
Disruption of inducible 6-phosphofructo-2-kinase ameliorates diet-induced adiposity but exacerbates systemic insulin resistance and adipose tissue inflammatory response. J Biol Chem (2009) 1.14
Nitro-fatty acid inhibition of neointima formation after endoluminal vessel injury. Circ Res (2009) 1.13
SysZNF: the C2H2 zinc finger gene database. Nucleic Acids Res (2008) 1.13
miR-182 inhibits Schwann cell proliferation and migration by targeting FGF9 and NTM, respectively at an early stage following sciatic nerve injury. Nucleic Acids Res (2012) 1.12
The use of global transcriptional analysis to reveal the biological and cellular events involved in distinct development phases of Trichophyton rubrum conidial germination. BMC Genomics (2007) 1.11
Detection of human novel influenza A (H1N1) viruses using multi-fluorescent real-time RT-PCR. Virus Res (2009) 1.10
A comparison of murine smooth muscle cells generated from embryonic versus induced pluripotent stem cells. Stem Cells Dev (2009) 1.09
More than 9,000,000 unique genes in human gut bacterial community: estimating gene numbers inside a human body. PLoS One (2009) 1.09
A novel computational method to predict transcription factor DNA binding preference. Biochem Biophys Res Commun (2006) 1.08
Honokiol induces apoptosis through p53-independent pathway in human colorectal cell line RKO. World J Gastroenterol (2004) 1.08
Transcriptome analysis of medicinal plant Salvia miltiorrhiza and identification of genes related to tanshinone biosynthesis. PLoS One (2013) 1.08
Development of simple sequence repeat (SSR) markers from a genome survey of Chinese bayberry (Myrica rubra). BMC Genomics (2012) 1.08
Monocyte chemotactic protein-induced protein 1 (MCPIP1) suppresses stress granule formation and determines apoptosis under stress. J Biol Chem (2011) 1.07
Comparative proteogenomic analysis of the Leptospira interrogans virulence-attenuated strain IPAV against the pathogenic strain 56601. Cell Res (2011) 1.07
Genome sequences of wild and domestic bactrian camels. Nat Commun (2012) 1.07
Regulation of drug-induced liver injury by signal transduction pathways: critical role of mitochondria. Trends Pharmacol Sci (2013) 1.07
Predicting the protein SUMO modification sites based on Properties Sequential Forward Selection (PSFS). Biochem Biophys Res Commun (2007) 1.06
Smooth and cardiac muscle-selective knock-out of Kruppel-like factor 4 causes postnatal death and growth retardation. J Biol Chem (2010) 1.06
MicroRNA-27 (miR-27) targets prohibitin and impairs adipocyte differentiation and mitochondrial function in human adipose-derived stem cells. J Biol Chem (2013) 1.05
Differential gene expression profiling and biological process analysis in proximal nerve segments after sciatic nerve transection. PLoS One (2013) 1.05
Identification of miRNAs and their target genes in developing maize ears by combined small RNA and degradome sequencing. BMC Genomics (2014) 1.04
The bacterial effector VopL organizes actin into filament-like structures. Cell (2013) 1.04
PPARgamma and its ligands: therapeutic implications in cardiovascular disease. Clin Sci (Lond) (2009) 1.03
Nucleocapsid protein of SARS coronavirus tightly binds to human cyclophilin A. Biochem Biophys Res Commun (2004) 1.03
An integrated approach to segmentation and nonrigid registration for application in image-guided pelvic radiotherapy. Med Image Anal (2011) 1.03
Human apolipoprotein A-II protects against diet-induced atherosclerosis in transgenic rabbits. Arterioscler Thromb Vasc Biol (2012) 1.03
Genomic characterization of ribitol teichoic acid synthesis in Staphylococcus aureus: genes, genomic organization and gene duplication. BMC Genomics (2006) 1.03
The cocktail party problem. Neural Comput (2005) 1.03
Porous nanofibrous PLLA scaffolds for vascular tissue engineering. Biomaterials (2010) 1.03
miR-221 and miR-222 promote Schwann cell proliferation and migration by targeting LASS2 after sciatic nerve injury. J Cell Sci (2012) 1.02
Electrophilic nitro-fatty acids inhibit vascular inflammation by disrupting LPS-dependent TLR4 signalling in lipid rafts. Cardiovasc Res (2013) 1.01
Surgery for contralateral acute epidural hematoma following acute subdural hematoma evacuation: five new cases and a short literature review. Acta Neurochir (Wien) (2012) 1.01