Published in IEEE/ACM Trans Comput Biol Bioinform on November 01, 2012
Open source libraries and frameworks for mass spectrometry based proteomics: a developer's perspective. Biochim Biophys Acta (2013) 1.00
Fast and accurate database searches with MS-GF+Percolator. J Proteome Res (2013) 0.99
Confident and sensitive phosphoproteomics using combinations of collision induced dissociation and electron transfer dissociation. J Proteomics (2014) 0.80
Evaluating the effect of database inflation in proteogenomic search on sensitive and reliable peptide identification. BMC Genomics (2016) 0.75
A Multi-network Approach Identifies Protein-Specific Co-expression in Asymptomatic and Symptomatic Alzheimer's Disease. Cell Syst (2016) 0.75
The DNA sequence of the human X chromosome. Nature (2005) 6.97
Human Proteinpedia enables sharing of human protein data. Nat Biotechnol (2008) 4.21
Fibrocystin/polyductin modulates renal tubular formation by regulating polycystin-2 expression and function. J Am Soc Nephrol (2008) 2.04
Identification of genetic variants in base excision repair pathway and their associations with risk of esophageal squamous cell carcinoma. Cancer Res (2004) 1.64
VEGFR-1 expressed by malignant melanoma-initiating cells is required for tumor growth. Cancer Res (2011) 1.62
Proteome analysis of hepatocellular carcinoma by two-dimensional difference gel electrophoresis: novel protein markers in hepatocellular carcinoma tissues. Mol Cell Proteomics (2007) 1.57
Increased frequency of follicular helper T cells in patients with autoimmune thyroid disease. J Clin Endocrinol Metab (2011) 1.50
Biatrial reduction plasty with reef imbricate technique as an adjunct to maze procedure for permanent atrial fibrillation associated with giant left atria. Interact Cardiovasc Thorac Surg (2010) 1.42
FFA-induced adipocyte inflammation and insulin resistance: involvement of ER stress and IKKβ pathways. Obesity (Silver Spring) (2010) 1.24
Toward an understanding of the protein interaction network of the human liver. Mol Syst Biol (2011) 1.24
ABCB5 identifies a therapy-refractory tumor cell population in colorectal cancer patients. Cancer Res (2011) 1.23
Differential effect of common ligands and molecular oxygen on antimicrobial activity of silver nanoparticles versus silver ions. Environ Sci Technol (2011) 1.23
Dose tolerance limits and dose volume histogram evaluation for stereotactic body radiotherapy. J Appl Clin Med Phys (2011) 1.22
Expression of MUC1 in primary and metastatic human epithelial ovarian cancer and its therapeutic significance. Gynecol Oncol (2007) 1.21
A mechanism for vocal-respiratory coupling in the mammalian parabrachial nucleus. J Neurosci (2006) 1.17
miR-497 induces apoptosis of breast cancer cells by targeting Bcl-w. Exp Ther Med (2011) 1.15
Hemophagocytic lymphohistiocytosis: clinical analysis of 103 adult patients. Medicine (Baltimore) (2014) 1.14
Robust method for infrared small-target detection based on Boolean map visual theory. Appl Opt (2014) 1.13
PRINCESS, a protein interaction confidence evaluation system with multiple data sources. Mol Cell Proteomics (2008) 1.12
PACT is a negative regulator of p53 and essential for cell growth and embryonic development. Proc Natl Acad Sci U S A (2007) 1.12
Characterization of a novel C-type lectin-like gene, LSECtin: demonstration of carbohydrate binding and expression in sinusoidal endothelial cells of liver and lymph node. J Biol Chem (2004) 1.10
Polycystin-2 expression is regulated by a PC2-binding domain in the intracellular portion of fibrocystin. J Biol Chem (2008) 1.10
Novel HER2 aptamer selectively delivers cytotoxic drug to HER2-positive breast cancer cells in vitro. J Transl Med (2012) 1.10
Association between mannose-binding lectin gene polymorphisms and susceptibility to severe acute respiratory syndrome coronavirus infection. J Infect Dis (2005) 1.09
Protein interaction networks of Saccharomyces cerevisiae, Caenorhabditis elegans and Drosophila melanogaster: large-scale organization and robustness. Proteomics (2006) 1.08
Visualization of nitric oxide production in the mouse main olfactory bulb by a cell-trappable copper(II) fluorescent probe. Proc Natl Acad Sci U S A (2010) 1.08
The finished DNA sequence of human chromosome 12. Nature (2006) 1.08
Multi-modality of pI distribution in whole proteome. Proteomics (2006) 1.07
Hypofractionated stereotactic radiotherapy for the treatment of brain metastases. Cancer (2009) 1.07
Evidence for 'silicon' within the cell walls of suspension-cultured rice cells. New Phytol (2013) 1.05
Preliminary results from a Phase II trail of conformal radiation therapy for pediatric patients with localised low-grade astrocytoma and ependymoma. Int J Radiat Oncol Biol Phys (2002) 1.05
Synergy of photoacoustic and fluorescence flow cytometry of circulating cells with negative and positive contrasts. J Biophotonics (2012) 1.05
A dataset of human fetal liver proteome identified by subcellular fractionation and multiple protein separation and identification technology. Mol Cell Proteomics (2006) 1.04
Prognostic evaluation of Nanog, Oct4, Sox2, PCNA, Ki67 and E-cadherin expression in gastric cancer. Med Oncol (2014) 1.03
Role for the pleckstrin homology domain-containing protein CKIP-1 in AP-1 regulation and apoptosis. EMBO J (2005) 1.02
Structured cone arrays for continuous and effective collection of micron-sized oil droplets from water. Nat Commun (2013) 1.02
Conditional mutation of Pkd2 causes cystogenesis and upregulates beta-catenin. J Am Soc Nephrol (2009) 1.02
SOX2 and nestin expression in human melanoma: an immunohistochemical and experimental study. Exp Dermatol (2011) 1.01
Phosphoproteome analysis of the human Chang liver cells using SCX and a complementary mass spectrometric strategy. Proteomics (2008) 0.99
Functional proteomic analysis of nonalcoholic fatty liver disease in rat models: enoyl-coenzyme a hydratase down-regulation exacerbates hepatic steatosis. Hepatology (2010) 0.99
Identification, characterization, and functional study of the two novel human members of the semaphorin gene family. J Biol Chem (2002) 0.99
Bio-inspired hierarchical macromolecule-nanoclay hydrogels for robust underwater superoleophobicity. Adv Mater (2010) 0.99
A fast workflow for identification and quantification of proteomes. Mol Cell Proteomics (2013) 0.98
Image-guided intracavitary high-dose-rate brachytherapy for cervix cancer: A single institutional experience with three-dimensional CT-based planning. Brachytherapy (2009) 0.98
Effects of the monomeric, oligomeric, and fibrillar Abeta42 peptides on the proliferation and differentiation of adult neural stem cells from subventricular zone. J Neurochem (2007) 0.98
Correlative studies on uPA mRNA and uPAR mRNA expression with vascular endothelial growth factor, microvessel density, progression and survival time of patients with gastric cancer. World J Gastroenterol (2006) 0.97
Cloning, expression and characterization of a novel human CAP10-like gene hCLP46 from CD34(+) stem/progenitor cells. Gene (2006) 0.97
Manipulating and dispensing micro/nanoliter droplets by superhydrophobic needle nozzles. ACS Nano (2013) 0.97
Proteome-wide prediction of signal flow direction in protein interaction networks based on interacting domains. Mol Cell Proteomics (2009) 0.97
Comparative proteomic analysis of osteosarcoma cell and human primary cultured osteoblastic cell. Cancer Invest (2009) 0.96
Liverbase: a comprehensive view of human liver biology. J Proteome Res (2010) 0.96
SmI2-mediated intermolecular coupling of γ-lactam N-α-radicals with activated alkenes: asymmetric synthesis of 11-hydroxylated analogues of the lead compounds CP-734432 and PF-04475270. J Org Chem (2012) 0.96
[Follicular dendritic cell sarcoma: a clinicopathologic study of 8 cases]. Zhonghua Bing Li Xue Za Zhi (2008) 0.96
A new strategy to filter out false positive identifications of peptides in SEQUEST database search results. Proteomics (2007) 0.95
PRDM1 is involved in chemoresistance of T-cell lymphoma and down-regulated by the proteasome inhibitor. Blood (2008) 0.95
β-Glucan enhances antitumor immune responses by regulating differentiation and function of monocytic myeloid-derived suppressor cells. Eur J Immunol (2013) 0.95
Ex vivo expansion and in vivo infusion of bone marrow-derived Flk-1+CD31-CD34- mesenchymal stem cells: feasibility and safety from monkey to human. Stem Cells Dev (2006) 0.95
Changes of monocyte human leukocyte antigen-DR expression as a reliable predictor of mortality in severe sepsis. Crit Care (2011) 0.94
Identification of metastasis-associated proteins by proteomic analysis and functional exploration of interleukin-18 in metastasis. Proteomics (2003) 0.94
Identification of aberrant microRNA expression pattern in pediatric gliomas by microarray. Diagn Pathol (2013) 0.94
Tumor-inhibitory effect and immunomodulatory activity of fullerol C60(OH)x. Small (2008) 0.94
Understanding the chemical vapor deposition of diamond: recent progress. J Phys Condens Matter (2009) 0.93
Glucocorticoid-induced tumor necrosis factor receptor family-related protein exacerbates collagen-induced arthritis by enhancing the expansion of Th17 cells. Am J Pathol (2011) 0.93
The G-113A polymorphism in CYP1A2 affects the caffeine metabolic ratio in a Chinese population. Clin Pharmacol Ther (2005) 0.93
SILVER: an efficient tool for stable isotope labeling LC-MS data quantitative analysis with quality control methods. Bioinformatics (2013) 0.93
PepDistiller: A quality control tool to improve the sensitivity and accuracy of peptide identifications in shotgun proteomics. Proteomics (2012) 0.93
Quantitative proteome analysis of HCC cell lines with different metastatic potentials by SILAC. Proteomics (2008) 0.93
Free fatty acid induces endoplasmic reticulum stress and apoptosis of β-cells by Ca2+/calpain-2 pathways. PLoS One (2013) 0.92
USP22 is useful as a novel molecular marker for predicting disease progression and patient prognosis of oral squamous cell carcinoma. PLoS One (2012) 0.92
Constitutive activation of IKKβ in adipose tissue prevents diet-induced obesity in mice. Endocrinology (2011) 0.91
Improved therapeutic responses in a xenograft model of human B lymphoma (Namalwa) for liposomal vincristine versus liposomal doxorubicin targeted via anti-CD19 IgG2a or Fab' fragments. Clin Cancer Res (2004) 0.91
Frizzled-8 as a putative therapeutic target in human lung cancer. Biochem Biophys Res Commun (2011) 0.91
HCl-activated neural and epithelial vanilloid receptors (TRPV1) in cat esophageal mucosa. Am J Physiol Gastrointest Liver Physiol (2009) 0.90
A systems biology-based classifier for hepatocellular carcinoma diagnosis. PLoS One (2011) 0.90
Klebsiella singaporensis sp. nov., a novel isomaltulose-producing bacterium. Int J Syst Evol Microbiol (2004) 0.90
Non-small cell lung cancer with EML4-ALK translocation in Chinese male never-smokers is characterized with early-onset. BMC Cancer (2014) 0.90
MiR-346 regulates CD4⁺CXCR5⁺ T cells in the pathogenesis of Graves' disease. Endocrine (2015) 0.90
The potentiation role of hepatopoietin on activator protein-1 is dependent on its sulfhydryl oxidase activity. J Biol Chem (2003) 0.89
Haplotype structure and evidence for positive selection at the human IL13 locus. Mol Biol Evol (2003) 0.89
Population-based and family-based association studies of an (AC)n dinucleotide repeat in alpha-7 nicotinic receptor subunit gene and schizophrenia. Schizophr Res (2006) 0.89
Proteomic analysis on structural proteins of Severe Acute Respiratory Syndrome coronavirus. Proteomics (2004) 0.89
Macrophage migration inhibitory factor directly interacts with hepatopoietin and regulates the proliferation of hepatoma cell. Exp Cell Res (2004) 0.89
Gene-gene interaction filtering with ensemble of filters. BMC Bioinformatics (2011) 0.89
A comparative proteomics analysis of rat mitochondria from the cerebral cortex and hippocampus in response to antipsychotic medications. J Proteome Res (2009) 0.89
Molecular mechanisms of the cartilage-specific microRNA-140 in osteoarthritis. Inflamm Res (2013) 0.89
Monitoring morphological changes in the retina of rhodopsin-/- mice with spectral domain optical coherence tomography. Invest Ophthalmol Vis Sci (2012) 0.89
Bayesian nonparametric model for the validation of peptide identification in shotgun proteomics. Mol Cell Proteomics (2008) 0.89
Engineered Asymmetric Heterogeneous Membrane: A Concentration-Gradient-Driven Energy Harvesting Device. J Am Chem Soc (2015) 0.88
Identification and genomic characterization of a novel fish reovirus, Hubei grass carp disease reovirus, isolated in 2009 in China. J Gen Virol (2013) 0.88
NK/T-cell lymphoma in a child with hypersensitivity to mosquito bites. J Pediatr Hematol Oncol (2009) 0.88
Phosvitin plays a critical role in the immunity of zebrafish embryos via acting as a pattern recognition receptor and an antimicrobial effector. J Biol Chem (2011) 0.88
Bodipy derivatives as organic triplet photosensitizers for aerobic photoorganocatalytic oxidative coupling of amines and photooxidation of dihydroxylnaphthalenes. J Org Chem (2013) 0.88
c-Met modulates RPE migratory response to laser-induced retinal injury. PLoS One (2012) 0.88
Novel association of a PROC variant with ischemic stroke in a Chinese Han population. Hum Genet (2012) 0.88
Ezrin is associated with gastric cancer progression and prognosis. Pathol Oncol Res (2011) 0.88