Published in PLoS Comput Biol on June 28, 2012
Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data. PLoS Comput Biol (2014) 1.74
Viral phylodynamics. PLoS Comput Biol (2013) 1.71
The global transmission network of HIV-1. J Infect Dis (2013) 1.68
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Molecular tools for studying HIV transmission in sexual networks. Curr Opin HIV AIDS (2014) 1.10
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Importance of Viral Sequence Length and Number of Variable and Informative Sites in Analysis of HIV Clustering. AIDS Res Hum Retroviruses (2015) 0.80
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Social and Genetic Networks of HIV-1 Transmission in New York City. PLoS Pathog (2017) 0.77
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Expanding HIV-1 subtype B transmission networks among men who have sex with men in Poland. PLoS One (2017) 0.75
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Long-term persistence of transmitted HIV drug resistance in male genital tract secretions: implications for secondary transmission. J Infect Dis (2007) 1.64
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HIV-1 transmission during early infection in men who have sex with men: a phylodynamic analysis. PLoS Med (2013) 1.55
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Evaluation of the role of location and distance in recruitment in respondent-driven sampling. Int J Health Geogr (2011) 1.14
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Parsing social network survey data from hidden populations using stochastic context-free grammars. PLoS One (2009) 1.04
Detecting signatures of selection from DNA sequences using Datamonkey. Methods Mol Biol (2009) 1.01
Episodic HIV Risk Behavior Can Greatly Amplify HIV Prevalence and the Fraction of Transmissions from Acute HIV Infection. Stat Commun Infect Dis (2012) 1.00
Transmitted drug resistance in the CFAR network of integrated clinical systems cohort: prevalence and effects on pre-therapy CD4 and viral load. PLoS One (2011) 0.99
Dynamics of the emergence and establishment of a newly dominant genotype of Japanese encephalitis virus throughout Asia. J Virol (2014) 0.98
Characteristics of recently HIV-infected men who use the Internet to find male sex partners and sexual practices with those partners. J Acquir Immune Defic Syndr (2006) 0.97
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Pleocytosis is associated with disruption of HIV compartmentalization between blood and cerebral spinal fluid viral populations. Virology (2008) 0.94
Heterogeneity in Number and Type of Sexual Contacts in a Gay Urban Cohort. Stat Commun Infect Dis (2012) 0.94
Dynamic sex roles among men who have sex with men and transmissions from primary HIV infection. Epidemiology (2010) 0.94
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Respondent driven sampling: determinants of recruitment and a method to improve point estimation. PLoS One (2013) 0.93
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Rapid social network assessment for predicting HIV and STI risk among men attending bars and clubs in San Diego, California. Sex Transm Infect (2010) 0.91
Microbiology. Sources of antimicrobial resistance. Science (2013) 0.89
Sampling through time and phylodynamic inference with coalescent and birth-death models. J R Soc Interface (2014) 0.88
Can non-lytic CD8+ T cells drive HIV-1 escape? PLoS Pathog (2013) 0.87
Herpes simplex virus type 2 acquisition during recent HIV infection does not influence plasma HIV levels. J Acquir Immune Defic Syndr (2008) 0.86
Detectable signals of episodic risk effects on acute HIV transmission: strategies for analyzing transmission systems using genetic data. Epidemics (2012) 0.86
Computational analysis and identification of amino acid sites in dengue E proteins relevant to development of diagnostics and vaccines. Virus Genes (2007) 0.86
Mapping protease inhibitor resistance to human immunodeficiency virus type 1 sequence polymorphisms within patients. J Virol (2007) 0.85
Human immunodeficiency virus-1 RNA levels in cerebrospinal fluid exhibit a set point in clinically stable patients not receiving antiretroviral therapy. J Infect Dis (2003) 0.85
Unlocking pathogen genotyping information for public health by mathematical modeling. Trends Microbiol (2010) 0.84
A dynamic dose-response model to account for exposure patterns in risk assessment: a case study in inhalation anthrax. J R Soc Interface (2010) 0.83
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