Published in Phys Rev E Stat Nonlin Soft Matter Phys on August 31, 2012
Emergence of structural and dynamical properties of ecological mutualistic networks. Nature (2013) 1.89
Effect of localization on the stability of mutualistic ecological networks. Nat Commun (2015) 0.88
Invading a mutualistic network: to be or not to be similar. Ecol Evol (2016) 0.75
Correlations in the degeneracy of structurally controllable topologies for networks. Sci Rep (2017) 0.75
Exotic Plant Infestation Is Associated with Decreased Modularity and Increased Numbers of Connectors in Mixed-Grass Prairie Pollination Networks. PLoS One (2016) 0.75
Predicting essential components of signal transduction networks: a dynamic model of guard cell abscisic acid signaling. PLoS Biol (2006) 3.53
Near linear time algorithm to detect community structures in large-scale networks. Phys Rev E Stat Nonlin Soft Matter Phys (2007) 3.19
Network model of survival signaling in large granular lymphocyte leukemia. Proc Natl Acad Sci U S A (2008) 2.60
Robustness and fragility of Boolean models for genetic regulatory networks. J Theor Biol (2005) 2.51
Boolean network simulations for life scientists. Source Code Biol Med (2008) 2.05
Boolean modeling in systems biology: an overview of methodology and applications. Phys Biol (2012) 1.88
How frequency and intensity shape diversity-disturbance relationships. Proc Natl Acad Sci U S A (2011) 1.79
Modeling systems-level regulation of host immune responses. PLoS Comput Biol (2007) 1.56
Dynamical and structural analysis of a T cell survival network identifies novel candidate therapeutic targets for large granular lymphocyte leukemia. PLoS Comput Biol (2011) 1.51
Integrating multiple disturbance aspects: management of an invasive thistle, Carduus nutans. Ann Bot (2011) 1.46
Activation of neural progenitor cells in human eyes with proliferative vitreoretinopathy. Exp Eye Res (2012) 1.46
Conserved network motifs allow protein-protein interaction prediction. Bioinformatics (2004) 1.31
Attractor analysis of asynchronous Boolean models of signal transduction networks. J Theor Biol (2010) 1.28
Environmental variability and the initiation of dispersal: turbulence strongly increases seed release. Proc Biol Sci (2006) 1.27
Boolean modeling of transcriptome data reveals novel modes of heterotrimeric G-protein action. Mol Syst Biol (2010) 1.23
Common and unique elements of the ABA-regulated transcriptome of Arabidopsis guard cells. BMC Genomics (2011) 1.21
Pollinator Behavior Mediates Negative Interactions between Two Congeneric Invasive Plant Species. Am Nat (2010) 1.19
Dispersal patterns, dispersal mechanisms, and invasion wave speeds for invasive thistles. Am Nat (2007) 1.10
Modeling the mutualistic interactions between tubeworms and microbial consortia. PLoS Biol (2005) 1.09
A network model for plant-pollinator community assembly. Proc Natl Acad Sci U S A (2010) 1.05
Elementary signaling modes predict the essentiality of signal transduction network components. BMC Syst Biol (2011) 1.04
Invasional interference due to similar inter- and intraspecific competition between invaders may affect management. Ecol Appl (2012) 1.03
NET-SYNTHESIS: a software for synthesis, inference and simplification of signal transduction networks. Bioinformatics (2007) 1.02
Bacteriophage-mediated competition in Bordetella bacteria. Proc Biol Sci (2006) 0.99
Plant populations track rather than buffer climate fluctuations. Ecol Lett (2010) 0.97
Warming increases the spread of an invasive thistle. PLoS One (2011) 0.96
Discrete dynamic modeling with asynchronous update, or how to model complex systems in the absence of quantitative information. Methods Mol Biol (2009) 0.95
Boolean modeling of biological regulatory networks: a methodology tutorial. Methods (2012) 0.95
Variation in host susceptibility and infectiousness generated by co-infection: the myxoma-Trichostrongylus retortaeformis case in wild rabbits. J R Soc Interface (2007) 0.94
Generating super-shedders: co-infection increases bacterial load and egg production of a gastrointestinal helminth. J R Soc Interface (2012) 0.93
Stabilization of perturbed Boolean network attractors through compensatory interactions. BMC Syst Biol (2014) 0.91
Elucidation of directionality for co-expressed genes: predicting intra-operon termination sites. Bioinformatics (2005) 0.91
An effective network reduction approach to find the dynamical repertoire of discrete dynamic networks. Chaos (2013) 0.91
Supporting crop pollinators with floral resources: network-based phenological matching. Ecol Evol (2013) 0.91
Optimizing reproductive phenology in a two-resource world: a dynamic allocation model of plant growth predicts later reproduction in phosphorus-limited plants. Ann Bot (2011) 0.89
Constraint-based network model of pathogen-immune system interactions. J R Soc Interface (2008) 0.89
Dynamic models of immune responses: what is the ideal level of detail? Theor Biol Med Model (2010) 0.89
The composite insect trap: an innovative combination trap for biologically diverse sampling. PLoS One (2011) 0.88
Boolean modeling: a logic-based dynamic approach for understanding signaling and regulatory networks and for making useful predictions. Wiley Interdiscip Rev Syst Biol Med (2014) 0.85
Network model of immune responses reveals key effectors to single and co-infection dynamics by a respiratory bacterium and a gastrointestinal helminth. PLoS Comput Biol (2012) 0.85
Diversity-disturbance relationships: frequency and intensity interact. Biol Lett (2012) 0.85
What determines the temporal changes of species degree and strength in an oceanic island plant-disperser network? PLoS One (2012) 0.84
Network analysis reveals cross-links of the immune pathways activated by bacteria and allergen. Phys Rev E Stat Nonlin Soft Matter Phys (2011) 0.83
Why Do CD8+ T Cells become Indifferent to Tumors: A Dynamic Modeling Approach. Front Physiol (2011) 0.83
Roots of the invasive species Carduus nutans L. and C. acanthoides L. produce large amounts of aplotaxene, a possible allelochemical. J Chem Ecol (2014) 0.83
Importance of individual and environmental variation for invasive species spread: a spatial integral projection model. Ecology (2011) 0.82
Seed release by invasive thistles: the impact of plant and environmental factors. Proc Biol Sci (2007) 0.82
Discrete dynamic modeling of signal transduction networks. Methods Mol Biol (2012) 0.81
Counting pollen grains using readily available, free image processing and analysis software. Ann Bot (2009) 0.81
Disease Dynamics in a Dynamic Social Network. Physica A (2010) 0.80
Influence of microsite disturbance on the establishment of two congeneric invasive thistles. PLoS One (2012) 0.79
Comparison of upstream regulators in human ex vivo cultured cornea limbal epithelial stem cells and differentiated corneal epithelial cells. BMC Genomics (2013) 0.78
A state-dependent model for the optimal management of an invasive metapopulation. Ecol Appl (2008) 0.78
Studying the effect of cell division on expression patterns of the segment polarity genes. J R Soc Interface (2008) 0.77
Applications of particle image velocimetry for seed release studies. Ecology (2010) 0.77
Shaping specificity in signaling networks. Nat Genet (2007) 0.77
Effects of community structure on the dynamics of random threshold networks. Phys Rev E Stat Nonlin Soft Matter Phys (2013) 0.76
Unrecognized impact of a biocontrol agent on the spread rate of an invasive thistle. Ecol Appl (2014) 0.75