Published in Genome Biol Evol on January 01, 2012
Mechanisms of intron loss and gain in the fission yeast Schizosaccharomyces. PLoS One (2013) 0.84
Characterization of newly gained introns in Daphnia populations. Genome Biol Evol (2014) 0.81
Microhomology-mediated intron loss during metazoan evolution. Genome Biol Evol (2013) 0.79
Rapid differentiation of cryptic species within Cryptococcus gattii by a duplex PCR assay. J Clin Microbiol (2013) 0.79
Intra and Inter-Spore Variability in Rhizophagus irregularis AOX Gene. PLoS One (2015) 0.77
Intron evolution in Neurospora: the role of mutational bias and selection. Genome Res (2014) 0.77
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol (2003) 102.57
Search and clustering orders of magnitude faster than BLAST. Bioinformatics (2010) 51.97
De novo assembly of human genomes with massively parallel short read sequencing. Genome Res (2009) 45.91
Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform (2008) 22.07
Estimation of the current global burden of cryptococcal meningitis among persons living with HIV/AIDS. AIDS (2009) 16.37
Reconstructing the early evolution of Fungi using a six-gene phylogeny. Nature (2006) 8.94
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature (2010) 5.79
Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina). Nat Biotechnol (2008) 5.38
Intronic sequences flanking alternatively spliced exons are conserved between human and mouse. Genome Res (2003) 5.01
The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science (2012) 4.93
The origins of eukaryotic gene structure. Mol Biol Evol (2005) 4.11
Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science (2009) 4.05
The evolution of spliceosomal introns: patterns, puzzles and progress. Nat Rev Genet (2006) 3.64
Searching for regulatory elements in human noncoding sequences. Curr Opin Struct Biol (1997) 3.30
Multistate outbreak of Fusarium keratitis associated with use of a contact lens solution. JAMA (2006) 3.11
Complex spliceosomal organization ancestral to extant eukaryotes. Mol Biol Evol (2005) 2.46
Intron evolution as a population-genetic process. Proc Natl Acad Sci U S A (2002) 2.37
Multiple gene genealogies reveal recent dispersion and hybridization in the human pathogenic fungus Cryptococcus neoformans. Mol Ecol (2000) 2.30
The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion. PLoS Genet (2009) 2.29
Eukaryotic intron loss. Science (2003) 2.09
Selfish DNA and the origin of introns. Nature (1985) 2.08
The biology of intron gain and loss. Trends Genet (2005) 2.07
Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate. Science (2010) 1.86
The evolution of spliceosomal introns. Curr Opin Genet Dev (2002) 1.84
Pathogen profile update: Fusarium oxysporum. Mol Plant Pathol (2009) 1.72
Patterns of intron gain and loss in fungi. PLoS Biol (2004) 1.72
Birth of new spliceosomal introns in fungi by multiplication of introner-like elements. Curr Biol (2012) 1.67
Introns in gene evolution. Genetica (2003) 1.66
Extensive, recent intron gains in Daphnia populations. Science (2009) 1.64
Comparative genomic analysis of fungal genomes reveals intron-rich ancestors. Genome Biol (2007) 1.63
Both catalytic steps of nuclear pre-mRNA splicing are reversible. Science (2008) 1.62
The emergence of Cryptococcus gattii in British Columbia and the Pacific Northwest. Curr Infect Dis Rep (2008) 1.57
Characterization of intron loss events in mammals. Genome Res (2006) 1.56
The oldest fossil evidence of animal parasitism by fungi supports a Cretaceous diversification of fungal-arthropod symbioses. Mol Phylogenet Evol (2008) 1.43
Intron/exon structure of the chicken pyruvate kinase gene. Cell (1985) 1.40
Whole genome sequence analysis of Cryptococcus gattii from the Pacific Northwest reveals unexpected diversity. PLoS One (2011) 1.33
Mystery of intron gain: new data and new models. Trends Genet (2008) 1.22
Intron-rich ancestors. Trends Genet (2006) 1.21
Mechanisms of intron gain and loss in Cryptococcus. Genome Biol (2008) 1.21
Origin of introns by 'intronization' of exonic sequences. Trends Genet (2008) 1.20
The emergence of alternative 3' and 5' splice site exons from constitutive exons. PLoS Comput Biol (2007) 1.15
Intron-dominated genomes of early ancestors of eukaryotes. J Hered (2009) 1.07
Evidence for extensive recent intron transposition in closely related fungi. Curr Biol (2011) 1.03
Evidence of mRNA-mediated intron loss in the human-pathogenic fungus Cryptococcus neoformans. Eukaryot Cell (2006) 0.99
Large-scale tRNA intron transposition in the archaeal order Thermoproteales represents a novel mechanism of intron gain. Mol Biol Evol (2010) 0.95
Why do genes have introns? FEBS Lett (1993) 0.87
Intronization, de-intronization and intron sliding are rare in Cryptococcus. BMC Evol Biol (2009) 0.87
Genome evolution: where do new introns come from? Curr Biol (2012) 0.79
Emergence of a new disease as a result of interspecific virulence gene transfer. Nat Genet (2006) 2.80
The origins of plant pathogens in agro-ecosystems. Annu Rev Phytopathol (2008) 2.42
Dothideomycete plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum. Plant Cell (2007) 2.12
Origin and domestication of the fungal wheat pathogen Mycosphaerella graminicola via sympatric speciation. Mol Biol Evol (2006) 1.55
The making of a new pathogen: insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species. Genome Res (2011) 1.53
Physiologic data acquisition system and database for the study of disease dynamics in the intensive care unit. Crit Care Med (2003) 1.46
Comparative pathogenomics reveals horizontally acquired novel virulence genes in fungi infecting cereal hosts. PLoS Pathog (2012) 1.34
Whole-genome and chromosome evolution associated with host adaptation and speciation of the wheat pathogen Mycosphaerella graminicola. PLoS Genet (2010) 1.24
Intraspecific comparison and annotation of two complete mitochondrial genome sequences from the plant pathogenic fungus Mycosphaerella graminicola. Fungal Genet Biol (2007) 1.12
Rapid speciation following recent host shifts in the plant pathogenic fungus Rhynchosporium. Evolution (2008) 1.10
SnTox3 acts in effector triggered susceptibility to induce disease on wheat carrying the Snn3 gene. PLoS Pathog (2009) 1.09
Population genetics of fungal and oomycete effectors involved in gene-for-gene interactions. Mol Plant Microbe Interact (2009) 1.08
The accessory genome as a cradle for adaptive evolution in pathogens. PLoS Pathog (2012) 1.07
QoI resistance emerged independently at least 4 times in European populations of Mycosphaerella graminicola. Pest Manag Sci (2009) 1.07
Breakage-fusion-bridge cycles and large insertions contribute to the rapid evolution of accessory chromosomes in a fungal pathogen. PLoS Genet (2013) 1.05
Measuring quantitative virulence in the wheat pathogen Zymoseptoria tritici using high-throughput automated image analysis. Phytopathology (2014) 1.04
Evidence for extensive recent intron transposition in closely related fungi. Curr Biol (2011) 1.03
The cysteine rich necrotrophic effector SnTox1 produced by Stagonospora nodorum triggers susceptibility of wheat lines harboring Snn1. PLoS Pathog (2012) 1.03
Evolution of linked avirulence effectors in Leptosphaeria maculans is affected by genomic environment and exposure to resistance genes in host plants. PLoS Pathog (2010) 1.01
Zymoseptoria ardabiliae and Z. pseudotritici, two progenitor species of the septoria tritici leaf blotch fungus Z. tritici (synonym: Mycosphaerella graminicola). Mycologia (2012) 1.00
Population structure and pathotype diversity of the wheat blast pathogen Magnaporthe oryzae 25 years after its emergence in Brazil. Phytopathology (2014) 0.99
Geographical variation and positive diversifying selection in the host-specific toxin SnToxA. Mol Plant Pathol (2007) 0.98
Global migration patterns in the fungal wheat pathogen Phaeosphaeria nodorum. Mol Ecol (2006) 0.97
Thermal adaptation in the fungal pathogen Mycosphaerella graminicola. Mol Ecol (2011) 0.97
Coevolution and life cycle specialization of plant cell wall degrading enzymes in a hemibiotrophic pathogen. Mol Biol Evol (2013) 0.97
Molecular population genetic analysis differentiates two virulence mechanisms of the fungal avirulence gene NIP1. Mol Plant Microbe Interact (2004) 0.94
Experimental measures of pathogen competition and relative fitness. Annu Rev Phytopathol (2013) 0.92
Differential Selection on Rhynchosporium secalis During Parasitic and Saprophytic Phases in the Barley Scald Disease Cycle. Phytopathology (2006) 0.91
An analysis of the durability of resistance to plant viruses. Phytopathology (2003) 0.91
Genetic structure of populations of the rice-infecting pathogen Rhizoctonia solani AG-1 IA from China. Phytopathology (2009) 0.90
Global diversity and distribution of three necrotrophic effectors in Phaeosphaeria nodorum and related species. New Phytol (2013) 0.90
Two new species of Rhynchosporium. Mycologia (2010) 0.88
Evidence for subdivision of the root-endophyte Phialocephala fortinii into cryptic species and recombination within species. Fungal Genet Biol (2004) 0.87
Further evidence for sexual reproduction in Rhynchosporium secalis based on distribution and frequency of mating-type alleles. Fungal Genet Biol (2003) 0.86
Frequency of Sexual Reproduction by Mycosphaerella graminicola on Partially Resistant Wheat Cultivars. Phytopathology (2002) 0.86
Global Hierarchical Gene Diversity Analysis Suggests the Fertile Crescent Is Not the Center of Origin of the Barley Scald Pathogen Rhynchosporium secalis. Phytopathology (2006) 0.85
Effect of hosts on competition among clones and evidence of differential selection between pathogenic and saprophytic phases in experimental populations of the wheat pathogen Phaeosphaeria nodorum. BMC Evol Biol (2011) 0.85
Local adaptation and evolutionary potential along a temperature gradient in the fungal pathogen Rhynchosporium commune. Evol Appl (2013) 0.85
Resistance to QoI Fungicides Is Widespread in Brazilian Populations of the Wheat Blast Pathogen Magnaporthe oryzae. Phytopathology (2015) 0.83
Significant difference in pathogenicity between MAT1-1 and MAT1-2 isolates in the wheat pathogen Mycosphaerella graminicola. Fungal Genet Biol (2006) 0.83
Genome-Wide Association Study Identifies Novel Candidate Genes for Aggressiveness, Deoxynivalenol Production, and Azole Sensitivity in Natural Field Populations of Fusarium graminearum. Mol Plant Microbe Interact (2016) 0.81
Evolutionary history of the mitochondrial genome in Mycosphaerella populations infecting bread wheat, durum wheat and wild grasses. Mol Phylogenet Evol (2010) 0.81
Quantitative variation in effector activity of ToxA isoforms from Stagonospora nodorum and Pyrenophora tritici-repentis. Mol Plant Microbe Interact (2012) 0.81
Sexual recombinants make a significant contribution to epidemics caused by the wheat pathogen Phaeosphaeria nodorum. Phytopathology (2010) 0.81
Wheat domestication accelerated evolution and triggered positive selection in the beta-xylosidase enzyme of Mycosphaerella graminicola. PLoS One (2009) 0.80
Phylogenetic and population genetic analyses of Phaeosphaeria nodorum and its close relatives indicate cryptic species and an origin in the Fertile Crescent. Fungal Genet Biol (2012) 0.79
Phylogeographical analyses reveal global migration patterns of the barley scald pathogen Rhynchosporium secalis. Mol Ecol (2008) 0.79
The Frequencies and Spatial Distribution of Mating Types in Stagonospora nodorum Are Consistent with Recurring Sexual Reproduction. Phytopathology (2006) 0.79
Divergence between sympatric rice- and soybean-infecting populations of Rhizoctonia solani anastomosis group-1 IA. Phytopathology (2008) 0.78
Can high-risk fungicides be used in mixtures without selecting for fungicide resistance? Phytopathology (2014) 0.78
The population genetic structure of Rhizoctonia solani AG-3PT from potato in the Colombian Andes. Phytopathology (2013) 0.78
Association between virulence and triazole tolerance in the phytopathogenic fungus Mycosphaerella graminicola. PLoS One (2013) 0.77
Concordant evolution of mitochondrial and nuclear genomes in the wheat pathogen Phaeosphaeria nodorum. Fungal Genet Biol (2007) 0.77
DNA fingerprinting of pearls to determine their origins. PLoS One (2013) 0.75