Published in RNA Biol on October 11, 2012
To be or not to be: regulation of restriction-modification systems and other toxin-antitoxin systems. Nucleic Acids Res (2013) 1.42
Small regulatory RNAs from low-GC Gram-positive bacteria. RNA Biol (2014) 0.91
sRNA antitoxins: more than one way to repress a toxin. Toxins (Basel) (2014) 0.88
One antitoxin--two functions: SR4 controls toxin mRNA decay and translation. Nucleic Acids Res (2013) 0.85
The ZorO-OrzO type I toxin-antitoxin locus: repression by the OrzO antitoxin. Nucleic Acids Res (2013) 0.84
RNA-mediated regulation in Gram-positive pathogens: an overview punctuated with examples from the group A Streptococcus. Mol Microbiol (2014) 0.82
Impact of Hfq on the Bacillus subtilis transcriptome. PLoS One (2014) 0.81
Structure, Biology, and Therapeutic Application of Toxin-Antitoxin Systems in Pathogenic Bacteria. Toxins (Basel) (2016) 0.78
The Type I toxin-antitoxin par locus from Enterococcus faecalis plasmid pAD1: RNA regulation by both cis- and trans-acting elements. Plasmid (2014) 0.78
In Vitro Characterization of the Type I Toxin-Antitoxin System bsrE/SR5 from Bacillus subtilis. J Biol Chem (2015) 0.77
A multistress responsive type I toxin-antitoxin system: bsrE/SR5 from the B. subtilis chromosome. RNA Biol (2016) 0.76
A Type III protein-RNA toxin-antitoxin system from Bacillus thuringiensis promotes plasmid retention during spore development. RNA Biol (2015) 0.76
Regulatory crosstalk between type I and type II toxin-antitoxin systems in the human pathogen Enterococcus faecalis. RNA Biol (2015) 0.76
Regulatory RNAs in Bacillus subtilis: a Gram-Positive Perspective on Bacterial RNA-Mediated Regulation of Gene Expression. Microbiol Mol Biol Rev (2016) 0.75
Mechanistic insights into type I toxin antitoxin systems in Helicobacter pylori: the importance of mRNA folding in controlling toxin expression. Nucleic Acids Res (2017) 0.75
5'-to-3' exoribonuclease activity in bacteria: role of RNase J1 in rRNA maturation and 5' stability of mRNA. Cell (2007) 3.08
Maturation of the 5' end of Bacillus subtilis 16S rRNA by the essential ribonuclease YkqC/RNase J1. Mol Microbiol (2007) 2.10
Structural basis for substrate binding, cleavage and allostery in the tRNA maturase RNase Z. Nature (2005) 1.71
Endonucleolytic processing of CCA-less tRNA precursors by RNase Z in Bacillus subtilis. EMBO J (2003) 1.62
Bacillus subtilis ribonucleases J1 and J2 form a complex with altered enzyme behaviour. Mol Microbiol (2009) 1.48
An RNA pyrophosphohydrolase triggers 5'-exonucleolytic degradation of mRNA in Bacillus subtilis. Mol Cell (2011) 1.45
The continuing story of endoribonuclease III. J Mol Microbiol Biotechnol (2004) 1.43
Role of Bacillus subtilis RNase J1 endonuclease and 5'-exonuclease activities in trp leader RNA turnover. J Biol Chem (2008) 1.40
The small untranslated RNA SR1 from the Bacillus subtilis genome is involved in the regulation of arginine catabolism. Mol Microbiol (2006) 1.38
In vitro analysis of the interaction between the small RNA SR1 and its primary target ahrC mRNA. Nucleic Acids Res (2007) 1.36
Three essential ribonucleases-RNase Y, J1, and III-control the abundance of a majority of Bacillus subtilis mRNAs. PLoS Genet (2012) 1.35
Mini-III, an unusual member of the RNase III family of enzymes, catalyses 23S ribosomal RNA maturation in B. subtilis. Mol Microbiol (2008) 1.33
FourU: a novel type of RNA thermometer in Salmonella. Mol Microbiol (2007) 1.33
When all's zed and done: the structure and function of RNase Z in prokaryotes. Nat Rev Microbiol (2007) 1.30
Ribosomes initiating translation of the hbs mRNA protect it from 5'-to-3' exoribonucleolytic degradation by RNase J1. Mol Microbiol (2009) 1.28
The Bacillus subtilis ydcDE operon encodes an endoribonuclease of the MazF/PemK family and its inhibitor. Mol Microbiol (2005) 1.26
Transfer RNA-mediated antitermination in vitro. Nucleic Acids Res (2002) 1.24
Structure of the ubiquitous 3' processing enzyme RNase Z bound to transfer RNA. Nat Struct Mol Biol (2006) 1.14
Molecular basis for the recognition and cleavage of RNA by the bifunctional 5'-3' exo/endoribonuclease RNase J. Structure (2011) 1.12
Type A and B RNase P RNAs are interchangeable in vivo despite substantial biophysical differences. EMBO Rep (2006) 1.10
Implication of CcpN in the regulation of a novel untranslated RNA (SR1) in Bacillus subtilis. Mol Microbiol (2005) 1.07
Bacillus subtilis mutants with knockouts of the genes encoding ribonucleases RNase Y and RNase J1 are viable, with major defects in cell morphology, sporulation, and competence. J Bacteriol (2013) 1.06
BsrG/SR4 from Bacillus subtilis--the first temperature-dependent type I toxin-antitoxin system. Mol Microbiol (2012) 1.05
Analysis of mRNA decay in Bacillus subtilis. Methods Enzymol (2008) 1.03
Ribonuclease PH plays a major role in the exonucleolytic maturation of CCA-containing tRNA precursors in Bacillus subtilis. Nucleic Acids Res (2005) 1.03
Bacillus subtilis RNA deprotection enzyme RppH recognizes guanosine in the second position of its substrates. Proc Natl Acad Sci U S A (2013) 1.02
A dual-function sRNA from B. subtilis: SR1 acts as a peptide encoding mRNA on the gapA operon. Mol Microbiol (2010) 1.02
The essential function of B. subtilis RNase III is to silence foreign toxin genes. PLoS Genet (2012) 1.01
CodY activates transcription of a small RNA in Bacillus subtilis. J Bacteriol (2009) 1.00
Activation of 5'-3' exoribonuclease Xrn1 by cofactor Dcs1 is essential for mitochondrial function in yeast. Proc Natl Acad Sci U S A (2012) 0.98
Sodium-induced GCN4 expression controls the accumulation of the 5' to 3' RNA degradation inhibitor, 3'-phosphoadenosine 5'-phosphate. J Biol Chem (2005) 0.97
Antisense RNA-mediated transcriptional attenuation in plasmid pIP501: the simultaneous interaction between two complementary loop pairs is required for efficient inhibition by the antisense RNA. Microbiology (2007) 0.95
Antisense-RNA mediated transcriptional attenuation: importance of a U-turn loop structure in the target RNA of plasmid pIP501 for efficient inhibition by the antisense RNA. J Mol Biol (2003) 0.95
RNase J1 endonuclease activity as a probe of RNA secondary structure. RNA (2009) 0.93
Ribosomal protein L3 bound to 23S precursor rRNA stimulates its maturation by Mini-III ribonuclease. Mol Microbiol (2009) 0.92
In vitro assays of 5' to 3'-exoribonuclease activity. Methods Enzymol (2008) 0.89
Real-time fluorescence detection of exoribonucleases. RNA (2009) 0.89
Transcriptional repressor CcpN from Bacillus subtilis compensates asymmetric contact distribution by cooperative binding. J Mol Biol (2006) 0.88
Under the Tucson sun: a meeting in the desert on mRNA decay. RNA (2004) 0.86
One antitoxin--two functions: SR4 controls toxin mRNA decay and translation. Nucleic Acids Res (2013) 0.85
Small stable RNA maturation and turnover in Bacillus subtilis. Mol Microbiol (2014) 0.84
The 5S rRNA maturase, ribonuclease M5, is a Toprim domain family member. Nucleic Acids Res (2005) 0.83
SR1--a small RNA with two remarkably conserved functions. Nucleic Acids Res (2012) 0.83
Activation of tRNA maturation by downstream uracil residues in B. subtilis. Structure (2012) 0.83
Identification of ligands affecting the activity of the transcriptional repressor CcpN from Bacillus subtilis. J Mol Biol (2008) 0.83
Maturation of 23S rRNA in Bacillus subtilis in the absence of Mini-III. J Bacteriol (2010) 0.82
CopR binds and bends its target DNA: a footprinting and fluorescence resonance energy transfer study. Nucleic Acids Res (2002) 0.81
The transcriptional repressor CcpN from Bacillus subtilis uses different repression mechanisms at different promoters. J Biol Chem (2009) 0.81
Construction of a modular plasmid family for chromosomal integration in Bacillus subtilis. J Microbiol Methods (2012) 0.81
Plasmid Replication Control by Antisense RNAs. Microbiol Spectr (2014) 0.79
Search for additional targets of the transcriptional regulator CcpN from Bacillus subtilis. FEMS Microbiol Lett (2009) 0.79
Plasmid pIP501 encoded transcriptional repressor CopR: single amino acids involved in dimerization are also important for folding of the monomer. Plasmid (2002) 0.78
Transcriptional Repressor CopR: use of SELEX to study the copR operator indicates that evolution was directed at maximal binding affinity. J Bacteriol (2004) 0.78
Transcriptional repressor CopR acts by inhibiting RNA polymerase binding. Microbiology (2011) 0.77
Cervimycin C resistance in Bacillus subtilis is due to a promoter up-mutation and increased mRNA stability of the constitutive ABC-transporter gene bmrA. FEMS Microbiol Lett (2010) 0.77
Assay of antitermination of ribosomal RNA transcription. Methods Enzymol (2003) 0.76
TraM protein of plasmid R1: in vitro selection of the target region reveals two consensus 7 bp binding motifs spaced by a 4 bp linker of defined sequence. Plasmid (2007) 0.75