Published in BMC Genomics on November 05, 2012
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods (2001) 414.27
Bioconductor: open software development for computational biology and bioinformatics. Genome Biol (2004) 143.19
Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat Biotechnol (1996) 72.84
Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res (2003) 52.74
Characteristics of a human cell line transformed by DNA from human adenovirus type 5. J Gen Virol (1977) 41.93
Small-sample estimation of negative binomial dispersion, with applications to SAGE data. Biostatistics (2007) 18.19
Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms. Nucleic Acids Res (2008) 10.10
Next-generation tag sequencing for cancer gene expression profiling. Genome Res (2009) 6.50
Aligning short sequencing reads with Bowtie. Curr Protoc Bioinformatics (2010) 4.07
Microarrays, deep sequencing and the true measure of the transcriptome. BMC Biol (2011) 3.12
A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling. BMC Genomics (2010) 2.95
DeepSAGE--digital transcriptomics with high sensitivity, simple experimental protocol and multiplexing of samples. Nucleic Acids Res (2006) 2.66
Hodgkin disease: Hodgkin and Reed-Sternberg cells picked from histological sections show clonal immunoglobulin gene rearrangements and appear to be derived from B cells at various stages of development. Proc Natl Acad Sci U S A (1994) 2.41
3' tag digital gene expression profiling of human brain and universal reference RNA using Illumina Genome Analyzer. BMC Genomics (2009) 2.12
Relationship between gene expression and observed intensities in DNA microarrays--a modeling study. Nucleic Acids Res (2006) 1.74
Overlapping probabilities of top ranking gene lists, hypergeometric distribution, and stringency of gene selection criterion. Conf Proc IEEE Eng Med Biol Soc (2006) 1.67
Genetic alteration and gene expression modulation during cancer progression. Mol Cancer (2004) 1.50
Molecular cytogenetic characterization of non-Hodgkin lymphoma cell lines. Genes Chromosomes Cancer (2002) 1.08
Power of deep sequencing and agilent microarray for gene expression profiling study. Mol Biotechnol (2010) 1.05
Technical and biological variance structure in mRNA-Seq data: life in the real world. BMC Genomics (2012) 1.03
DeepSAGE: higher sensitivity and multiplexing of samples using a simpler experimental protocol. Methods Mol Biol (2008) 0.90
Serial analysis of gene expression and cancer. Curr Opin Oncol (2003) 0.82
Common variants conferring risk of schizophrenia. Nature (2009) 10.37
Genome sequence and analysis of the tuber crop potato. Nature (2011) 7.77
SHOREmap: simultaneous mapping and mutation identification by deep sequencing. Nat Methods (2009) 4.01
Report of the European Myeloma Network on multiparametric flow cytometry in multiple myeloma and related disorders. Haematologica (2008) 2.99
Gene expression analysis of endometrium reveals progesterone resistance and candidate susceptibility genes in women with endometriosis. Endocrinology (2007) 2.95
High-dose therapy improves progression-free survival and survival in relapsed follicular non-Hodgkin's lymphoma: results from the randomized European CUP trial. J Clin Oncol (2003) 2.65
RNA interference in vitro and in vivo using a novel chitosan/siRNA nanoparticle system. Mol Ther (2006) 2.59
Molecular signatures to improve diagnosis in peripheral T-cell lymphoma and prognostication in angioimmunoblastic T-cell lymphoma. Blood (2009) 2.43
FGFR3 dysregulation in multiple myeloma: frequency and prognostic relevance. Br J Haematol (2002) 2.07
Routine bone marrow biopsy has little or no therapeutic consequence for positron emission tomography/computed tomography-staged treatment-naive patients with Hodgkin lymphoma. J Clin Oncol (2012) 1.93
Circulating human B and plasma cells. Age-associated changes in counts and detailed characterization of circulating normal CD138- and CD138+ plasma cells. Haematologica (2010) 1.61
European Myeloma Network recommendations on the evaluation and treatment of newly diagnosed patients with multiple myeloma. Haematologica (2014) 1.57
Report from the European Myeloma Network on interphase FISH in multiple myeloma and related disorders. Haematologica (2012) 1.45
Construction of reference chromosome-scale pseudomolecules for potato: integrating the potato genome with genetic and physical maps. G3 (Bethesda) (2013) 1.42
A metagenome of a full-scale microbial community carrying out enhanced biological phosphorus removal. ISME J (2011) 1.34
Genome wide transcriptional analysis of resting and IL2 activated human natural killer cells: gene expression signatures indicative of novel molecular signaling pathways. BMC Genomics (2007) 1.30
Effective dose of CT- and fluoroscopy-guided perineural/epidural injections of the lumbar spine: a comparative study. Cardiovasc Intervent Radiol (2006) 1.29
CtIP Mutations Cause Seckel and Jawad Syndromes. PLoS Genet (2011) 1.26
Embryonic stem cell grafting in normal and infarcted myocardium: serial assessment with MR imaging and PET dual detection. Radiology (2009) 1.21
Genome-wide scans using archived neonatal dried blood spot samples. BMC Genomics (2009) 1.20
The etiology of multiple sclerosis: genetic evidence for the involvement of the human endogenous retrovirus HERV-Fc1. PLoS One (2011) 1.17
Interrater reliability of diagnostic methods in traditional Indian ayurvedic medicine. Evid Based Complement Alternat Med (2013) 1.17
Prevalence and clinical implications of epstein-barr virus infection in de novo diffuse large B-cell lymphoma in Western countries. Clin Cancer Res (2014) 1.13
Intramyocardial injection of vascular endothelial growth factor-A165 plasmid followed by granulocyte-colony stimulating factor to induce angiogenesis in patients with severe chronic ischaemic heart disease. Eur Heart J (2006) 1.10
Shielding of sleeping beauty DNA transposon-delivered transgene cassettes by heterologous insulators in early embryonal cells. Mol Ther (2008) 1.02
MicroRNA expression profiling identifies molecular signatures associated with anaplastic large cell lymphoma. Blood (2013) 1.02
The Hsp60-(p.V98I) mutation associated with hereditary spastic paraplegia SPG13 compromises chaperonin function both in vitro and in vivo. J Biol Chem (2008) 1.02
Role of routine imaging in detecting recurrent lymphoma: A review of 258 patients with relapsed aggressive non-Hodgkin and Hodgkin lymphoma. Am J Hematol (2014) 1.01
Biosynthesis of the myxobacterial antibiotic corallopyronin A. Chembiochem (2010) 1.01
Antibiotics from myxobacteria. Nat Prod Rep (2014) 1.00
The in vivo toxicity of hydroxyurea depends on its direct target catalase. J Biol Chem (2010) 0.99
Multiparametric flow cytometry for identification and fluorescence activated cell sorting of five distinct B-cell subpopulations in normal tonsil tissue. Am J Clin Pathol (2011) 0.98
The transcriptome of compatible and incompatible interactions of potato (Solanum tuberosum) with Phytophthora infestans revealed by DeepSAGE analysis. PLoS One (2012) 0.97
In multiple myeloma clonotypic CD38- /CD19+ / CD27+ memory B cells recirculate through bone marrow, peripheral blood and lymph nodes. Leuk Lymphoma (2004) 0.97
Early changes in serum IL-6 and VEGF levels predict clinical outcome following first-line therapy in aggressive non-Hodgkin's lymphoma. Ann Hematol (2005) 0.97
Positron emission tomography/computed tomography surveillance in patients with Hodgkin lymphoma in first remission has a low positive predictive value and high costs. Haematologica (2011) 0.96
Disruption of extracellular matrix structure may cause pseudoachondroplasia phenotypes in the absence of impaired cartilage oligomeric matrix protein secretion. J Biol Chem (2006) 0.95
A genome-wide study of panic disorder suggests the amiloride-sensitive cation channel 1 as a candidate gene. Eur J Hum Genet (2011) 0.95
Distinct gene expression profiles in different B-cell compartments in human peripheral lymphoid organs. BMC Immunol (2004) 0.93
Linkage disequilibrium mapping of a breast cancer susceptibility locus near RAI/PPP1R13L/iASPP. BMC Med Genet (2008) 0.92
Loss of MicroRNA targets in the 3' untranslated region as a mechanism of retroviral insertional activation of growth factor independence 1. J Virol (2009) 0.92
SorLA regulates the activity of lipoprotein lipase by intracellular trafficking. J Cell Sci (2011) 0.92
aRNA-longSAGE: a new approach to generate SAGE libraries from microdissected cells. Nucleic Acids Res (2004) 0.91
Generation of a predictive melphalan resistance index by drug screen of B-cell cancer cell lines. PLoS One (2011) 0.90
Association of beta-adrenergic receptor polymorphisms and mortality in carvedilol-treated chronic heart-failure patients. Br J Clin Pharmacol (2011) 0.90
Transgenic overexpression of pregnancy-associated plasma protein-A in murine arterial smooth muscle accelerates atherosclerotic lesion development. Am J Physiol Heart Circ Physiol (2010) 0.90
Idiotype vaccination in multiple myeloma induced a reduction of circulating clonal tumor B cells. Blood (2003) 0.90
Neutrophil Extracellular Traps in Ulcerative Colitis: A Proteome Analysis of Intestinal Biopsies. Inflamm Bowel Dis (2015) 0.89
A metabolic model for members of the genus Tetrasphaera involved in enhanced biological phosphorus removal. ISME J (2012) 0.88
Multiplex reverse transcription polymerase chain reaction screening in acute myeloid leukemia detects cytogenetically unrevealed abnormalities of prognostic significance. Haematologica (2005) 0.88
Multiparametric flow cytometry profiling of neoplastic plasma cells in multiple myeloma. Cytometry B Clin Cytom (2010) 0.88
Promoter polymorphisms in the chitinase 3-like 1 gene influence the serum concentration of YKL-40 in Danish patients with rheumatoid arthritis and in healthy subjects. Arthritis Res Ther (2011) 0.86
MyelomA Genetics International Consortium. Leuk Lymphoma (2012) 0.86
Association of GRIN1 and GRIN2A-D with schizophrenia and genetic interaction with maternal herpes simplex virus-2 infection affecting disease risk. Am J Med Genet B Neuropsychiatr Genet (2011) 0.85
Cell surface adhesion of pregnancy-associated plasma protein-A is mediated by four clusters of basic residues located in its third and fourth CCP module. Eur J Biochem (2004) 0.85
Cancer stem cells and the cellular hierarchy in haematological malignancies. Eur J Cancer (2009) 0.84
Corallopyronin A specifically targets and depletes essential obligate Wolbachia endobacteria from filarial nematodes in vivo. J Infect Dis (2012) 0.84
Anemia and erythropoiesis-stimulating agent administration in patients with non-Hodgkin lymphoma treated with cyclophosphamide, doxorubicin, vincristine, and prednisolone ± rituximab chemotherapy: results from an observational study. Leuk Lymphoma (2011) 0.84
Identification of ID-1 as a potential target gene of MMSET in multiple myeloma. Br J Haematol (2005) 0.82
Image database analysis of Hodgkin lymphoma. Comput Biol Chem (2013) 0.82
Efficacy and safety of CD34-selected and CD19-depleted autografting in multiple myeloma patients: a pilot study. Exp Hematol (2002) 0.82
Calmodulin mutations causing catecholaminergic polymorphic ventricular tachycardia confer opposing functional and biophysical molecular changes. FEBS J (2015) 0.82
Dual association of a TRKA polymorphism with schizophrenia. Psychiatr Genet (2011) 0.82
CRP genotype and haplotype associations with serum C-reactive protein level and DAS28 in untreated early rheumatoid arthritis patients. Arthritis Res Ther (2014) 0.81
Non-synonymous polymorphisms in the FCN1 gene determine ligand-binding ability and serum levels of M-ficolin. PLoS One (2012) 0.81
Linkage of atopic dermatitis to chromosomes 4q22, 3p24 and 3q21. Hum Genet (2009) 0.81
Further immunohistochemical characterization of BRD1 a new susceptibility gene for schizophrenia and bipolar affective disorder. Brain Struct Funct (2009) 0.81
Exposure time independent summary statistics for assessment of drug dependent cell line growth inhibition. BMC Bioinformatics (2014) 0.81
Limited phenotypic variation of hypocalcified amelogenesis imperfecta in a Danish five-generation family with a novel FAM83H nonsense mutation. Int J Paediatr Dent (2011) 0.81
Reproducible probe-level analysis of the Affymetrix Exon 1.0 ST array with R/Bioconductor. Brief Bioinform (2014) 0.80
C-MAF oncogene dysregulation in multiple myeloma: frequency and biological relevance. Leuk Lymphoma (2003) 0.80
MicroRNAs as novel biomarkers in diffuse large B-cell lymphoma--a systematic review. Dan Med J (2015) 0.79
Arrayed primer extension in the "array of arrays" format: a rational approach for microarray-based SNP genotyping. Genet Test (2007) 0.79
Analysis of transmission of novel polymorphisms in the somatostatin receptor 5 (SSTR5) gene in patients with autism. Am J Med Genet B Neuropsychiatr Genet (2003) 0.79