PubRank

Vincent Daubin

Author PubWeight™ 46.37‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia. Nature 2006 5.06
2 From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-Proteobacteria. PLoS Biol 2003 4.47
3 Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography. Genome Res 2006 3.53
4 Evolutionary origins of genomic repertoires in bacteria. PLoS Biol 2005 3.43
5 Examining bacterial species under the specter of gene transfer and exchange. Proc Natl Acad Sci U S A 2005 2.28
6 Databases of homologous gene families for comparative genomics. BMC Bioinformatics 2009 2.01
7 Genome-scale coestimation of species and gene trees. Genome Res 2012 1.82
8 Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations. Proc Natl Acad Sci U S A 2012 1.66
9 Dealing with incongruence in phylogenomic analyses. Philos Trans R Soc Lond B Biol Sci 2008 1.64
10 Models, algorithms and programs for phylogeny reconciliation. Brief Bioinform 2011 1.50
11 The origin of eukaryotes and their relationship with the Archaea: are we at a phylogenomic impasse? Nat Rev Microbiol 2010 1.40
12 Lateral gene transfer as a support for the tree of life. Proc Natl Acad Sci U S A 2012 1.40
13 Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations. Genome Res 2009 1.29
14 Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests. BMC Bioinformatics 2010 1.24
15 Efficient exploration of the space of reconciled gene trees. Syst Biol 2013 1.20
16 Comparative genomics and the evolution of prokaryotes. Trends Microbiol 2007 1.14
17 Genomes as documents of evolutionary history. Trends Ecol Evol 2009 1.13
18 Lateral gene transfer from the dead. Syst Biol 2013 1.10
19 Evolution of gene neighborhoods within reconciled phylogenies. Bioinformatics 2012 1.07
20 Modeling gene family evolution and reconciling phylogenetic discord. Methods Mol Biol 2012 1.01
21 Genomic species are ecological species as revealed by comparative genomics in Agrobacterium tumefaciens. Genome Biol Evol 2011 0.98
22 A Bayesian method for analyzing lateral gene transfer. Syst Biol 2014 0.93
23 Multiple nuclear gene phylogenetic analysis of the evolution of dioecy and sex chromosomes in the genus Silene. PLoS One 2011 0.87
24 Detecting phylogenetic incongruence using BIONJ: an improvement of the ILD test. Mol Phylogenet Evol 2004 0.85
25 High-quality sequence clustering guided by network topology and multiple alignment likelihood. Bioinformatics 2012 0.85
26 Lateral gene transfer, rearrangement, reconciliation. BMC Bioinformatics 2013 0.85
27 A bunch of fun-guys: the whole-genome view of yeast evolution. Trends Genet 2005 0.79
28 Reconstruction of an ancestral Yersinia pestis genome and comparison with an ancient sequence. BMC Genomics 2015 0.77
29 Contrasted evolutionary constraints on secreted and non-secreted proteomes of selected Actinobacteria. BMC Genomics 2013 0.77
30 TPMS: a set of utilities for querying collections of gene trees. BMC Bioinformatics 2013 0.77
31 [Healing the tree of life with lateral gene transfers]. Med Sci (Paris) 2012 0.75