Effective/census population size ratio estimation: a compendium and appraisal.

PubWeight™: 1.39‹?› | Rank: Top 10%

🔗 View Article (PMC 3488685)

Published in Ecol Evol on July 25, 2012

Authors

Friso P Palstra1, Dylan J Fraser

Author Affiliations

1: CNRS UMR 7206 Eco-anthropologie et Ethnobiologie, Equipe "Génétique des populations humaines", Muséum National d'Histoire Naturelle CP 139, 57 rue Cuvier, F-75231, Paris Cedex 05, France.

Articles citing this

Simple life-history traits explain key effective population size ratios across diverse taxa. Proc Biol Sci (2013) 1.23

Effects of overlapping generations on linkage disequilibrium estimates of effective population size. Genetics (2014) 1.14

Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas. Sci Adv (2016) 1.07

Fisheries-induced neutral and adaptive evolution in exploited fish populations and consequences for their adaptive potential. Evol Appl (2014) 1.01

Determinants of genetic diversity. Nat Rev Genet (2016) 0.92

High genetic diversity in a small population: the case of Chilean blue whales. Ecol Evol (2014) 0.91

Historical DNA reveals the demographic history of Atlantic cod (Gadus morhua) in medieval and early modern Iceland. Proc Biol Sci (2014) 0.90

Inbreeding load and purging: implications for the short-term survival and the conservation management of small populations. Heredity (Edinb) (2016) 0.90

Estimation of effective population size in continuously distributed populations: there goes the neighborhood. Heredity (Edinb) (2013) 0.90

Are there species smaller than 1 mm? Proc Biol Sci (2013) 0.89

Alternative reproductive tactics increase effective population size and decrease inbreeding in wild Atlantic salmon. Evol Appl (2014) 0.85

Life-history traits and effective population size in species with overlapping generations revisited: the importance of adult mortality. Heredity (Edinb) (2016) 0.84

Demographic status and genetic tagging of endangered capercaillie in NW Spain. PLoS One (2014) 0.82

Making sense of the relationships between Ne, Nb and Nc towards defining conservation thresholds in Atlantic salmon (Salmo salar). Heredity (Edinb) (2016) 0.81

Population size, habitat fragmentation, and the nature of adaptive variation in a stream fish. Proc Biol Sci (2014) 0.81

Effective population size, genetic variation, and their relevance for conservation: the bighorn sheep in Tiburon Island and comparisons with managed artiodactyls. PLoS One (2013) 0.81

Multidisciplinary population monitoring when demographic data are sparse: a case study of remote trout populations. Ecol Evol (2013) 0.80

Are heritability and selection related to population size in nature? Meta-analysis and conservation implications. Evol Appl (2016) 0.78

Time-series analysis reveals genetic responses to intensive management of razorback sucker (Xyrauchen texanus). Evol Appl (2013) 0.78

Does source population size affect performance in new environments? Evol Appl (2014) 0.77

Understanding Past Population Dynamics: Bayesian Coalescent-Based Modeling with Covariates. Syst Biol (2016) 0.77

On some genetic consequences of social structure, mating systems, dispersal, and sampling. Proc Natl Acad Sci U S A (2015) 0.76

Harvest-induced evolution and effective population size. Evol Appl (2016) 0.76

Alternative splicing and the evolution of phenotypic novelty. Philos Trans R Soc Lond B Biol Sci (2017) 0.76

Effective number of breeders, effective population size and their relationship with census size in an iteroparous species, Salvelinus fontinalis. Proc Biol Sci (2016) 0.76

Prediction and estimation of effective population size. Heredity (Edinb) (2016) 0.76

Population structure and effective/census population size ratio in threatened three-spined stickleback populations from an isolated river basin in northwest Spain. Genetica (2015) 0.76

High risks of losing genetic diversity in an endemic Mauritian gecko: implications for conservation. PLoS One (2014) 0.75

Genomics of a revived breed: Case study of the Belgian campine cattle. PLoS One (2017) 0.75

Keeping things local: Subpopulation Nb and Ne in a stream network with partial barriers to fish migration. Evol Appl (2017) 0.75

Repeated Habitat Disturbances by Fire Decrease Local Effective Population Size. J Hered (2016) 0.75

Temporal Genetic Variance and Propagule-Driven Genetic Structure Characterize Naturalized Rainbow Trout (Oncorhynchus mykiss) from a Patagonian Lake Impacted by Trout Farming. PLoS One (2015) 0.75

Effective population sizes of a major vector of human diseases, Aedes aegypti. Evol Appl (2017) 0.75

Articles cited by this

Evolution in Mendelian Populations. Genetics (1931) 138.42

Inbreeding and variance effective numbers in populations with overlapping generations. Genetics (1971) 7.03

A generalized approach for estimating effective population size from temporal changes in allele frequency. Genetics (1989) 6.29

ldne: a program for estimating effective population size from data on linkage disequilibrium. Mol Ecol Resour (2008) 4.12

Temporal allele frequency change and estimation of effective size in populations with overlapping generations. Genetics (1995) 2.90

Estimating effective population size and migration rates from genetic samples over space and time. Genetics (2003) 2.79

Genetic estimates of contemporary effective population size: what can they tell us about the importance of genetic stochasticity for wild population persistence? Mol Ecol (2008) 2.69

Linkage disequilibrium estimates of contemporary N e using highly variable genetic markers: a largely untapped resource for applied conservation and evolution. Evol Appl (2009) 2.65

Estimation of effective population sizes from data on genetic markers. Philos Trans R Soc Lond B Biol Sci (2005) 2.25

COMPUTER PROGRAMS: onesamp: a program to estimate effective population size using approximate Bayesian computation. Mol Ecol Resour (2008) 2.06

Estimation of population growth or decline in genetically monitored populations. Genetics (2003) 2.02

Temporal estimates of effective population size in species with overlapping generations. Genetics (2006) 2.00

Unbiased estimator for genetic drift and effective population size. Genetics (2007) 2.00

Loss of microsatellite diversity and low effective population size in an overexploited population of New Zealand snapper (Pagrus auratus). Proc Natl Acad Sci U S A (2002) 1.94

Spatio-temporal population structuring and genetic diversity retention in depleted Atlantic bluefin tuna of the Mediterranean Sea. Proc Natl Acad Sci U S A (2010) 1.90

Genetic estimates of contemporary effective population size: to what time periods do the estimates apply? Mol Ecol (2005) 1.88

A new method for estimating effective population sizes from a single sample of multilocus genotypes. Mol Ecol (2009) 1.70

Genetic effective size is three orders of magnitude smaller than adult census size in an abundant, Estuarine-dependent marine fish (Sciaenops ocellatus). Genetics (2002) 1.63

Comparative estimation of effective population sizes and temporal gene flow in two contrasting population systems. Mol Ecol (2007) 1.43

In situ population structure and ex situ representation of the endangered Amur tiger. Mol Ecol (2009) 1.38

Effective size of fluctuating salmon populations. Genetics (2002) 1.34

Demographic and genetic estimates of effective population size (Ne) reveals genetic compensation in steelhead trout. Mol Ecol (2003) 1.27

Temporal changes in allele frequencies and low effective population size in greater prairie-chickens. Mol Ecol (2004) 1.21

Calculating Ne and Ne/N in age-structured populations: a hybrid Felsenstein-Hill approach. Ecology (2011) 1.15

Census vs. effective population size in chinook salmon: large- and small-scale environmental perturbation effects. Mol Ecol (2003) 1.05

Contemporary gene flow and the spatio-temporal genetic structure of subdivided newt populations (Triturus cristatus, T. marmoratus). J Evol Biol (2005) 1.05

The history of effective population size and genetic diversity in the Yellowstone grizzly (Ursus arctos): implications for conservation. Proc Natl Acad Sci U S A (2003) 1.03

The influence of persistent individual differences and age at maturity on effective population size. Proc Biol Sci (2011) 0.99

Age structure, changing demography and effective population size in Atlantic salmon (Salmo salar). Genetics (2009) 0.97

The annual number of breeding adults and the effective population size of syntopic newts (Triturus cristatus, T. marmoratus). Mol Ecol (2001) 0.93

Concurrent habitat and life history influences on effective/census population size ratios in stream-dwelling trout. Ecol Evol (2012) 0.91

Effective population sizes and migration rates in fragmented populations of an endangered insect (Coenagrion mercuriale: Odonata). J Anim Ecol (2007) 0.91

Eco-evolutionary dynamics: fluctuations in population growth rate reduce effective population size in chinook salmon. Ecology (2010) 0.86

Census (N C) and genetically effective (N e) population size in a lake-resident population of brown trout Salmo trutta. J Fish Biol (2011) 0.85

Allele frequency covariance among cohorts and its use in estimating effective size of age-structured populations. Mol Ecol Resour (2012) 0.85