PubRank

W James Kent

Author PubWeight™ 565.78‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Initial sequencing and comparative analysis of the mouse genome. Nature 2002 96.15
2 Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 2007 75.09
3 Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res 2005 44.08
4 Galaxy: a platform for interactive large-scale genome analysis. Genome Res 2005 35.75
5 Human-mouse alignments with BLASTZ. Genome Res 2003 35.49
6 The UCSC Table Browser data retrieval tool. Nucleic Acids Res 2004 25.12
7 Aligning multiple genomic sequences with the threaded blockset aligner. Genome Res 2004 24.52
8 Ultraconserved elements in the human genome. Science 2004 17.14
9 The UCSC Genome Browser database: update 2010. Nucleic Acids Res 2009 16.58
10 The UCSC Genome Browser database: update 2011. Nucleic Acids Res 2010 16.24
11 Evolutionary and biomedical insights from the rhesus macaque genome. Science 2007 16.21
12 The UCSC Known Genes. Bioinformatics 2006 14.67
13 Assessing computational tools for the discovery of transcription factor binding sites. Nat Biotechnol 2005 14.29
14 Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. Nature 2007 11.66
15 Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution. Genome Res 2003 11.12
16 Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science 2010 9.78
17 The UCSC Genome Browser database: extensions and updates 2013. Nucleic Acids Res 2012 9.02
18 A high-resolution map of human evolutionary constraint using 29 mammals. Nature 2011 8.67
19 Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome. Genome Res 2007 7.05
20 The UCSC Genome Browser database: 2014 update. Nucleic Acids Res 2013 6.54
21 28-way vertebrate alignment and conservation track in the UCSC Genome Browser. Genome Res 2007 6.42
22 ENCODE data in the UCSC Genome Browser: year 5 update. Nucleic Acids Res 2012 6.29
23 ENCODE whole-genome data in the UCSC Genome Browser. Nucleic Acids Res 2009 5.98
24 A distal enhancer and an ultraconserved exon are derived from a novel retroposon. Nature 2006 5.98
25 ENCODE whole-genome data in the UCSC genome browser (2011 update). Nucleic Acids Res 2010 4.50
26 An encyclopedia of mouse DNA elements (Mouse ENCODE). Genome Biol 2012 4.15
27 ENCODE whole-genome data in the UCSC Genome Browser: update 2012. Nucleic Acids Res 2011 4.00
28 Reconstructing contiguous regions of an ancestral genome. Genome Res 2006 3.68
29 The ENCODE Project at UC Santa Cruz. Nucleic Acids Res 2006 3.57
30 Over 20% of human transcripts might form sense-antisense pairs. Nucleic Acids Res 2004 3.45
31 The UCSC Cancer Genomics Browser: update 2011. Nucleic Acids Res 2010 3.37
32 The UCSC genome browser and associated tools. Brief Bioinform 2012 3.29
33 The DNA sequence of human chromosome 7. Nature 2003 3.18
34 The UCSC Cancer Genomics Browser. Nat Methods 2009 3.08
35 The UCSC Proteome Browser. Nucleic Acids Res 2005 3.03
36 Hotspots of mammalian chromosomal evolution. Genome Biol 2004 2.92
37 The Human Epigenome Browser at Washington University. Nat Methods 2011 2.62
38 Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser. Bioinformatics 2013 2.42
39 Retrocopy contributions to the evolution of the human genome. BMC Genomics 2008 1.95
40 Environmentally induced foregut remodeling by PHA-4/FoxA and DAF-12/NHR. Science 2004 1.88
41 UCSC genome browser tutorial. Genomics 2008 1.73
42 Computational screening of conserved genomic DNA in search of functional noncoding elements. Nat Methods 2005 1.67
43 The UCSC Genome Browser. Curr Protoc Bioinformatics 2009 1.59
44 Understanding genome browsing. Nat Biotechnol 2009 1.55
45 Variation resources at UC Santa Cruz. Nucleic Acids Res 2006 1.42
46 The UCSC Genome Browser. Curr Protoc Bioinformatics 2007 1.40
47 Centromere reference models for human chromosomes X and Y satellite arrays. Genome Res 2014 1.23
48 Analysis of the role of Caenorhabditis elegans GC-AG introns in regulated splicing. Nucleic Acids Res 2002 1.06
49 The UCSC Genome Browser. Curr Protoc Hum Genet 2011 1.04
50 The UCSC Genome Browser. Curr Protoc Bioinformatics 2012 1.04
51 Comparative genomic analysis using the UCSC genome browser. Methods Mol Biol 2007 0.98
52 Building a pan-genome reference for a population. J Comput Biol 2015 0.83
53 Piloting the zebrafish genome browser. Dev Dyn 2006 0.78