Published in Bioengineered on December 06, 2012
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Under the microscope: From pathogens to probiotics and back. Bioengineered (2015) 0.78
A beginner's guide to phylogenetics. Microb Ecol (2013) 0.77
The superior fault tolerance of artificial neural network training with a fault/noise injection-based genetic algorithm. Protein Cell (2016) 0.75
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Training signaling pathway maps to biochemical data with constrained fuzzy logic: quantitative analysis of liver cell responses to inflammatory stimuli. PLoS Comput Biol (2011) 1.53
Energy-efficient waveform shapes for neural stimulation revealed with a genetic algorithm. J Neural Eng (2010) 1.28
KoBaMIN: a knowledge-based minimization web server for protein structure refinement. Nucleic Acids Res (2012) 1.25
Detection of closely linked multiple quantitative trait loci using a genetic algorithm. Genetics (2001) 1.12
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Protein alignment algorithms with an efficient backtracking routine on multiple GPUs. BMC Bioinformatics (2011) 0.99
Exploiting heterogeneous features to improve in silico prediction of peptide status - amyloidogenic or non-amyloidogenic. BMC Bioinformatics (2011) 0.93
A combination of compositional index and genetic algorithm for predicting transmembrane helical segments. PLoS One (2011) 0.90
People efficiently explore the solution space of the computationally intractable traveling salesman problem to find near-optimal tours. PLoS One (2010) 0.89
An effective hybrid of hill climbing and genetic algorithm for 2D triangular protein structure prediction. Proteome Sci (2011) 0.87
The protein folding network indicates that the ultrafast folding mutant of villin headpiece subdomain has a deeper folding funnel. J Chem Phys (2011) 0.87
Genetic algorithm optimization in drug design QSAR: Bayesian-regularized genetic neural networks (BRGNN) and genetic algorithm-optimized support vectors machines (GA-SVM). Mol Divers (2010) 0.85
Toward a mechanics of adaptive behavior: evolutionary dynamics and matching theory statics. J Exp Anal Behav (2010) 0.85
Modeling disordered regions in proteins using Rosetta. PLoS One (2011) 0.85
Vertical decomposition with Genetic Algorithm for Multiple Sequence Alignment. BMC Bioinformatics (2011) 0.80
Optimization of auto-induction medium for G-CSF production by Escherichia coli using artificial neural networks coupled with genetic algorithm. World J Microbiol Biotechnol (2012) 0.80
Confronting two-pair primer design for enzyme-free SNP genotyping based on a genetic algorithm. BMC Bioinformatics (2010) 0.79
Calculating petal tools by using genetic algorithms. Appl Opt (2006) 0.78
Feature selection from nocturnal oximetry using genetic algorithms to assist in obstructive sleep apnoea diagnosis. Med Eng Phys (2011) 0.78
Parallel Niche Pareto AlineaGA--an evolutionary multiobjective approach on multiple sequence alignment. J Integr Bioinform (2011) 0.77
Optimization of a genetic algorithm for searching molecular conformer space. J Chem Phys (2011) 0.77
'Big data', Hadoop and cloud computing in genomics. J Biomed Inform (2013) 2.40
Contribution of three bile-associated loci, bsh, pva, and btlB, to gastrointestinal persistence and bile tolerance of Listeria monocytogenes. Infect Immun (2005) 1.90
Implementation of the newborn screening programme for sickle cell disease in England: results for 2003-2005. J Med Screen (2008) 1.69
Acinetobacter baumannii: an emerging opportunistic pathogen. Virulence (2012) 1.63
Multiple deletions of the osmolyte transporters BetL, Gbu, and OpuC of Listeria monocytogenes affect virulence and growth at high osmolarity. Appl Environ Microbiol (2002) 1.46
Accelerating in silico research with workflows: a lesson in Simplicity. Comput Biol Med (2013) 1.40
Campylobacter ureolyticus: an emerging gastrointestinal pathogen? FEMS Immunol Med Microbiol (2010) 1.30
Molecular and physiological analysis of the role of osmolyte transporters BetL, Gbu, and OpuC in growth of Listeria monocytogenes at low temperatures. Appl Environ Microbiol (2004) 1.24
Role for HtrA in stress induction and virulence potential in Listeria monocytogenes. Appl Environ Microbiol (2005) 1.24
Improving gastric transit, gastrointestinal persistence and therapeutic efficacy of the probiotic strain Bifidobacterium breve UCC2003. Microbiology (2007) 1.20
Heterologous expression of BetL, a betaine uptake system, enhances the stress tolerance of Lactobacillus salivarius UCC118. Appl Environ Microbiol (2006) 1.17
Emerging dynamics of human campylobacteriosis in Southern Ireland. FEMS Immunol Med Microbiol (2011) 1.16
An overview of in silico protein function prediction. Arch Microbiol (2010) 1.04
Enhancing bile tolerance improves survival and persistence of Bifidobacterium and Lactococcus in the murine gastrointestinal tract. BMC Microbiol (2008) 1.03
Probiotics and gastrointestinal disease: successes, problems and future prospects. Gut Pathog (2009) 1.03
Specific osmolyte transporters mediate bile tolerance in Listeria monocytogenes. Infect Immun (2009) 1.01
Genomic investigation into strain heterogeneity and pathogenic potential of the emerging gastrointestinal pathogen Campylobacter ureolyticus. PLoS One (2013) 0.99
High-pressure processing--effects on microbial food safety and food quality. FEMS Microbiol Lett (2008) 0.99
In silico analysis of Ardmore, a novel mycobacteriophage isolated from soil. Gene (2010) 0.98
A putative P-type ATPase required for virulence and resistance to haem toxicity in Listeria monocytogenes. PLoS One (2012) 0.97
Functional metagenomics reveals novel salt tolerance loci from the human gut microbiome. ISME J (2012) 0.97
The human superorganism - of microbes and men. Med Hypotheses (2010) 0.96
Development of a luciferase-based reporter system to monitor Bifidobacterium breve UCC2003 persistence in mice. BMC Microbiol (2008) 0.96
Designer probiotics: a potential therapeutic for Clostridium difficile? J Med Microbiol (2008) 0.94
Digital biology: a new era has begun. Bioengineered (2012) 0.91
Molecular diagnostics: the changing culture of medical microbiology. Bioeng Bugs (2012) 0.91
The story of Mycoplasma mycoides JCVI-syn1.0: the forty million dollar microbe. Bioeng Bugs (2011) 0.90
Role for compatible solutes glycine betaine and L-carnitine in listerial barotolerance. Appl Environ Microbiol (2004) 0.89
Battle of the bugs. Science (2008) 0.88
Synthetic DNA: the next generation of big data storage. Bioengineered (2013) 0.88
Emergency Department Septic Screening in Respiratory Syncytial Virus (RSV) and Non-RSV Bronchiolitis. West J Emerg Med (2010) 0.87
Why appendectomies may lead to an increased risk of functional gastrointestinal disorders. Med Hypotheses (2008) 0.87
An in silico analysis of osmotolerance in the emerging gastrointestinal pathogen Cronobacter sakazakii. Bioeng Bugs (2011) 0.86
Engineering bioinformatics: building reliability, performance and productivity into bioinformatics software. Bioengineered (2015) 0.86
Validation of the EntericBio Panel II® multiplex polymerase chain reaction system for detection of Campylobacter spp., Salmonella spp., Shigella spp., and verotoxigenic E. coli for use in a clinical diagnostic setting. Diagn Microbiol Infect Dis (2012) 0.85
The human gut microbiome: the ghost in the machine. Future Microbiol (2012) 0.83
Improved detection of bacterial pathogens in patients presenting with gastroenteritis by use of the EntericBio real-time Gastro Panel I assay. J Clin Microbiol (2013) 0.81
Penicillin-binding proteins (PBP) and Lmo0441 (a PBP-like protein) play a role in Beta-lactam sensitivity of Listeria monocytogenes. Gut Pathog (2009) 0.81
Codon optimisation to improve expression of a Mycobacterium avium ssp. paratuberculosis-specific membrane-associated antigen by Lactobacillus salivarius. Pathog Dis (2013) 0.81
In silico modeling of the staphylococcal bacteriophage-derived peptidase CHAP(K). Bacteriophage (2011) 0.81
Comparative modelling of LysB from the mycobacterial bacteriophage Ardmore. Bioeng Bugs (2011) 0.80
Digitizing humanity. Artif DNA PNA XNA (2013) 0.80
Cronobacter sakazakii: stress survival and virulence potential in an opportunistic foodborne pathogen. Gut Microbes (2014) 0.79
Mining the human gut microbiome for novel stress resistance genes. Gut Microbes (2012) 0.79
Identification and characterization of an essential gene in Listeria monocytogenes using an inducible gene expression system. Bioeng Bugs (2011) 0.79
Molecular-based detection of the gastrointestinal pathogen Campylobacter ureolyticus in unpasteurized milk samples from two cattle farms in Ireland. Gut Pathog (2012) 0.79
Do infants and toddlers prefer nasal swabs or washes for specimen collection? Pediatr Infect Dis J (2010) 0.78
Draft Genome Sequence of Campylobacter corcagiensis Strain CIT045T, a Representative of a Novel Campylobacter Species Isolated from Lion-Tailed Macaques (Macaca silenus). Genome Announc (2014) 0.78
A role for translational control in listerial osmoregulation and strain variation? Foodborne Pathog Dis (2007) 0.78
Sustained participation, colonoscopy uptake and adenoma detection rates over two rounds of the Tallaght-Trinity College colorectal cancer screening programme with the faecal immunological test. Eur J Gastroenterol Hepatol (2014) 0.78
A beginner's guide to phylogenetics. Microb Ecol (2013) 0.77
Detection and genetic characterization of canine parvoviruses and coronaviruses in southern Ireland. Arch Virol (2010) 0.77
Epsilonproteobacteria in humans, New Zealand. Emerg Infect Dis (2012) 0.77
Functional Screening of the Cronobacter sakazakii BAA-894 Genome reveals a role for ProP (ESA_02131) in carnitine uptake. Bioengineered (2015) 0.76
Synthetic ribosomes: making molecules that make molecules. Bioengineered (2013) 0.76
Not so neglected diseases. J Infect Dev Ctries (2007) 0.76
Time it was, and what a time it was... Bioeng Bugs (2011) 0.76
Draft Genome Sequence of Campylobacter ureolyticus Strain CIT007, the First Whole-Genome Sequence of a Clinical Isolate. Genome Announc (2014) 0.75
Mortality in inflammatory bowel disease patients under 65 years of age. Scand J Gastroenterol (2014) 0.75
Salbutamol worth trying. Emerg Med J (2009) 0.75
Changing Diagnostic Methods and Increased Detection of Verotoxigenic Escherichia coli, Ireland. Emerg Infect Dis (2016) 0.75
Lysins to kill - a tale of viral weapons of mass destruction. Bioeng Bugs (2011) 0.75
Flawed meta-analysis creates doubt when answers are known. BMJ (2011) 0.75
Directed panspermia: a 21st century perspective. Sci Prog (2017) 0.75
Immunochemical faecal occult blood tests have superior stability and analytical performance characteristics over guaiac-based tests in a controlled in vitro study. J Clin Pathol (2011) 0.75
Clinical and pathological factors associated with colorectal cancer at the upper extreme of life. J Am Geriatr Soc (2010) 0.75
Explaining the output of ensembles in medical decision support on a case by case basis. Artif Intell Med (2003) 0.75
What's in a name...? Bioengineered (2012) 0.75