Published in PLoS One on November 30, 2012
Cycling of RNAs on Hfq. RNA Biol (2013) 1.22
RNA binding by Hfq and ring-forming (L)Sm proteins: a trade-off between optimal sequence readout and RNA backbone conformation. RNA Biol (2014) 0.82
Duplex formation between the sRNA DsrA and rpoS mRNA is not sufficient for efficient RpoS synthesis at low temperature. RNA Biol (2013) 0.78
Coot: model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr (2004) 227.01
The CCP4 suite: programs for protein crystallography. Acta Crystallogr D Biol Crystallogr (1994) 187.88
Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr D Biol Crystallogr (1997) 137.43
PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr (2010) 108.52
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol (2006) 40.15
Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J (1982) 38.14
MolProbity: all-atom contacts and structure validation for proteins and nucleic acids. Nucleic Acids Res (2007) 37.31
REFMAC5 dictionary: organization of prior chemical knowledge and guidelines for its use. Acta Crystallogr D Biol Crystallogr (2004) 14.28
The small RNA regulators of Escherichia coli: roles and mechanisms*. Annu Rev Microbiol (2004) 5.72
Hfq and its constellation of RNA. Nat Rev Microbiol (2011) 4.94
Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12. Mol Microbiol (1994) 4.34
Factor fraction required for the synthesis of bacteriophage Qbeta-RNA. Nature (1968) 4.02
Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like protein. EMBO J (2002) 3.88
The RNA-binding protein HF-I, known as a host factor for phage Qbeta RNA replication, is essential for rpoS translation in Escherichia coli. Genes Dev (1996) 3.62
Towards rationalization of crystallization screening for small- to medium-sized academic laboratories: the PACT/JCSG+ strategy. Acta Crystallogr D Biol Crystallogr (2005) 3.13
Structure of Escherichia coli Hfq bound to polyriboadenylate RNA. Proc Natl Acad Sci U S A (2009) 3.04
Escherichia coli Hfq has distinct interaction surfaces for DsrA, rpoS and poly(A) RNAs. Nat Struct Mol Biol (2004) 2.79
Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAs. RNA (2003) 2.57
Regulation of the Escherichia coli hfq gene encoding the host factor for phage Q beta. J Bacteriol (1994) 2.26
ProtorP: a protein-protein interaction analysis server. Bioinformatics (2008) 2.09
Sm-like proteins in Eubacteria: the crystal structure of the Hfq protein from Escherichia coli. Nucleic Acids Res (2003) 1.91
The Sm domain is an ancient RNA-binding motif with oligo(U) specificity. Proc Natl Acad Sci U S A (2001) 1.81
Interaction of the RNA chaperone Hfq with mRNAs: direct and indirect roles of Hfq in iron metabolism of Escherichia coli. Mol Microbiol (2003) 1.69
Interaction of Escherichia coli RNA polymerase with the ribosomal protein S1 and the Sm-like ATPase Hfq. Biochemistry (2003) 1.69
Dissecting RNA chaperone activity. RNA (2007) 1.55
The C-terminal domain of Escherichia coli Hfq is required for regulation. Nucleic Acids Res (2007) 1.55
Recognition of bacteriophage Qbeta plus strand RNA as a template by Qbeta replicase: role of RNA interactions mediated by ribosomal proteins S1 and host factor. J Mol Biol (1997) 1.55
Spectroscopic observation of RNA chaperone activities of Hfq in post-transcriptional regulation by a small non-coding RNA. Nucleic Acids Res (2007) 1.41
Structural insights into the dynamics and function of the C-terminus of the E. coli RNA chaperone Hfq. Nucleic Acids Res (2011) 1.30
Rapid binding and release of Hfq from ternary complexes during RNA annealing. Nucleic Acids Res (2011) 1.30
Functional replacement of the Escherichia coli hfq gene by the homologue of Pseudomonas aeruginosa. Microbiology (2002) 1.24
Major role for mRNA binding and restructuring in sRNA recruitment by Hfq. RNA (2011) 1.20
Structure of Pseudomonas aeruginosa Hfq protein. Acta Crystallogr D Biol Crystallogr (2005) 1.17
Cooperation of Escherichia coli Hfq hexamers in DsrA binding. Genes Dev (2011) 1.15
RNA chaperone activity and RNA-binding properties of the E. coli protein StpA. Nucleic Acids Res (2007) 1.07
Crystal structure of Hfq from Bacillus subtilis in complex with SELEX-derived RNA aptamer: insight into RNA-binding properties of bacterial Hfq. Nucleic Acids Res (2011) 1.05
Hexamer to monomer equilibrium of E. coli Hfq in solution and its impact on RNA annealing. J Mol Biol (2012) 1.02
Sm-like protein Hfq: location of the ATP-binding site and the effect of ATP on Hfq-- RNA complexes. Protein Sci (2007) 0.97
Coupling RNA annealing and strand displacement: a FRET-based microplate reader assay for RNA chaperone activity. Biotechniques (2007) 0.88
Computational approach to ensure the stability of the favorable ATP binding site in E. coli Hfq. J Mol Graph Model (2010) 0.79
Measurement of conformational changes accompanying desensitization in an ionotropic glutamate receptor. Cell (2006) 2.63
Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAs. RNA (2003) 2.57
RNA chaperones, RNA annealers and RNA helicases. RNA Biol (2007) 2.41
Leaderless mRNAs in bacteria: surprises in ribosomal recruitment and translational control. Mol Microbiol (2002) 2.30
RNA chaperone activity of the Sm-like Hfq protein. EMBO Rep (2003) 2.13
Reduced virulence of a hfq mutant of Pseudomonas aeruginosa O1. Microb Pathog (2003) 2.13
Dynamics and processivity of 40S ribosome scanning on mRNA in yeast. Mol Microbiol (2004) 2.12
The small RNA PhrS stimulates synthesis of the Pseudomonas aeruginosa quinolone signal. Mol Microbiol (2011) 2.00
Both RNase E and RNase III control the stability of sodB mRNA upon translational inhibition by the small regulatory RNA RyhB. Nucleic Acids Res (2005) 1.80
Translation initiation with 70S ribosomes: an alternative pathway for leaderless mRNAs. Nucleic Acids Res (2004) 1.79
Interaction of the RNA chaperone Hfq with mRNAs: direct and indirect roles of Hfq in iron metabolism of Escherichia coli. Mol Microbiol (2003) 1.69
Translation initiation and the fate of bacterial mRNAs. FEMS Microbiol Rev (2006) 1.64
Dissecting RNA chaperone activity. RNA (2007) 1.55
The C-terminal domain of Escherichia coli Hfq is required for regulation. Nucleic Acids Res (2007) 1.55
Control of Fur synthesis by the non-coding RNA RyhB and iron-responsive decoding. EMBO J (2007) 1.55
Hfq-dependent alterations of the transcriptome profile and effects on quorum sensing in Pseudomonas aeruginosa. Mol Microbiol (2006) 1.54
A Mek1-Mek2 heterodimer determines the strength and duration of the Erk signal. Nat Struct Mol Biol (2009) 1.48
Increased hydrophobicity at the N terminus/membrane interface impairs gating of the severe combined immunodeficiency-related ORAI1 mutant. J Biol Chem (2009) 1.39
Effects of ribosomal proteins S1, S2 and the DeaD/CsdA DEAD-box helicase on translation of leaderless and canonical mRNAs in Escherichia coli. Mol Microbiol (2002) 1.37
CX, an algorithm that identifies protruding atoms in proteins. Bioinformatics (2002) 1.33
Therapy of experimental pseudomonas infections with a nonreplicating genetically modified phage. Antimicrob Agents Chemother (2004) 1.31
Structural insights into the dynamics and function of the C-terminus of the E. coli RNA chaperone Hfq. Nucleic Acids Res (2011) 1.30
DPX: for the analysis of the protein core. Bioinformatics (2003) 1.29
Translational autocontrol of the Escherichia coli hfq RNA chaperone gene. RNA (2005) 1.25
Structural and functional characterisation of the chlorite dismutase from the nitrite-oxidizing bacterium "Candidatus Nitrospira defluvii": identification of a catalytically important amino acid residue. J Struct Biol (2010) 1.25
Atom depth as a descriptor of the protein interior. Biophys J (2003) 1.24
Functional replacement of the Escherichia coli hfq gene by the homologue of Pseudomonas aeruginosa. Microbiology (2002) 1.24
Detection of small RNAs in Pseudomonas aeruginosa by RNomics and structure-based bioinformatic tools. Microbiology (2008) 1.21
Unexpected diversity of chlorite dismutases: a catalytically efficient dimeric enzyme from Nitrobacter winogradskyi. J Bacteriol (2011) 1.19
Can soaked-in scavengers protect metalloprotein active sites from reduction during data collection? J Synchrotron Radiat (2009) 1.16
Unique features of the sodC-encoded superoxide dismutase from Mycobacterium tuberculosis, a fully functional copper-containing enzyme lacking zinc in the active site. J Biol Chem (2004) 1.15
Vicinal disulfide bridge conformers by experimental methods and by ab initio and DFT molecular computations. Proteins (2004) 1.13
Pathophysiology of protein aggregation and extended phenotyping in filaminopathy. Brain (2012) 1.12
The archaeal eIF2 homologue: functional properties of an ancient translation initiation factor. Nucleic Acids Res (2005) 1.12
Antimicrobial activity of a chimeric enzybiotic towards Staphylococcus aureus. J Biotechnol (2008) 1.10
Atom depth in protein structure and function. Trends Biochem Sci (2003) 1.09
Crystal structure of the intact archaeal translation initiation factor 2 demonstrates very high conformational flexibility in the alpha- and beta-subunits. J Mol Biol (2008) 1.09
Mutations in the N-terminal actin-binding domain of filamin C cause a distal myopathy. Am J Hum Genet (2011) 1.09
RNA chaperone activity and RNA-binding properties of the E. coli protein StpA. Nucleic Acids Res (2007) 1.07
Novel structural insights into F-actin-binding and novel functions of calponin homology domains. Curr Opin Struct Biol (2008) 1.07
Complete nucleotide sequence and molecular characterization of two lytic Staphylococcus aureus phages: 44AHJD and P68. FEMS Microbiol Lett (2003) 1.06
Translational activation by the noncoding RNA DsrA involves alternative RNase III processing in the rpoS 5'-leader. RNA (2008) 1.05
Translational activation of rpoS mRNA by the non-coding RNA DsrA and Hfq does not require ribosome binding. Nucleic Acids Res (2009) 1.04
Homodimeric β-galactosidase from Lactobacillus delbrueckii subsp. bulgaricus DSM 20081: expression in Lactobacillus plantarum and biochemical characterization. J Agric Food Chem (2012) 1.04
Differential inhibition of 30S and 70S translation initiation complexes on leaderless mRNA by kasugamycin. Biochem Biophys Res Commun (2002) 1.01
From autoinhibition to inhibition in trans: the Raf-1 regulatory domain inhibits Rok-alpha kinase activity. J Cell Biol (2009) 1.01
Distinct and overlapping binding sites of Pseudomonas aeruginosa Hfq and RsmA proteins on the non-coding RNA RsmY. Biochem Biophys Res Commun (2006) 1.00
Functional effects of variants of the RNA chaperone Hfq. Biochem Biophys Res Commun (2004) 0.96
Crystal structure of human filamin C domain 23 and small angle scattering model for filamin C 23-24 dimer. J Mol Biol (2007) 0.96
Structural flexibility of RNA as molecular basis for Hfq chaperone function. Nucleic Acids Res (2012) 0.95
Impact of subunit and oligomeric structure on the thermal and conformational stability of chlorite dismutases. Biochim Biophys Acta (2012) 0.93
Targeted proteolysis of plectin isoform 1a accounts for hemidesmosome dysfunction in mice mimicking the dominant skin blistering disease EBS-Ogna. PLoS Genet (2011) 0.93
Redox thermodynamics of high-spin and low-spin forms of chlorite dismutases with diverse subunit and oligomeric structures. Biochemistry (2012) 0.93
Consensus prediction of protein conformational disorder from amino acidic sequence. Open Biochem J (2008) 0.93
Augmentation of the antimicrobial efficacy of antibiotics by filamentous phage. Microb Drug Resist (2006) 0.92
Requirement of the CsdA DEAD-box helicase for low temperature riboregulation of rpoS mRNA. RNA Biol (2010) 0.91
Structural analysis of full-length Hfq from Escherichia coli. Acta Crystallogr Sect F Struct Biol Cryst Commun (2011) 0.91
Translation initiation factor a/eIF2(-gamma) counteracts 5' to 3' mRNA decay in the archaeon Sulfolobus solfataricus. Proc Natl Acad Sci U S A (2008) 0.90
New insights into the interactions of the translation initiation factor 2 from archaea with guanine nucleotides and initiator tRNA. J Mol Biol (2007) 0.90
Manipulating conserved heme cavity residues of chlorite dismutase: effect on structure, redox chemistry, and reactivity. Biochemistry (2014) 0.88
The cytotoxic activity of the bacteriophage lambda-holin protein reduces tumour growth rates in mammary cancer cell xenograft models. J Gene Med (2006) 0.88
A single mutation in the IF3 N-terminal domain perturbs the fidelity of translation initiation at three levels. J Mol Biol (2008) 0.87
Protein sequence redundancy reduction: comparison of various method. Bioinformation (2010) 0.87
Translation initiation complex formation in the crenarchaeon Sulfolobus solfataricus. RNA (2009) 0.87
Phage P68 virion-associated protein 17 displays activity against clinical isolates of Staphylococcus aureus. Antimicrob Agents Chemother (2005) 0.86
FRASS: the web-server for RNA structural comparison. BMC Bioinformatics (2010) 0.86
Bacterial helicases in post-transcriptional control. Biochim Biophys Acta (2013) 0.86
Bacteriophage-encoded toxins: the lambda-holin protein causes caspase-independent non-apoptotic cell death of eukaryotic cells. Cell Microbiol (2007) 0.85
Terminal assembly of sarcomeric filaments by intermolecular beta-sheet formation. Trends Biochem Sci (2008) 0.85
Functional regulation of the Listeria monocytogenes bacteriophage A118 holin by an intragenic inhibitor lacking the first transmembrane domain. Mol Microbiol (2003) 0.85
Small regulatory RNAs in Pseudomonas aeruginosa. RNA Biol (2012) 0.85
CX, DPX and PRIDE: WWW servers for the analysis and comparison of protein 3D structures. Nucleic Acids Res (2005) 0.84
Minor group human rhinovirus-receptor interactions: geometry of multimodular attachment and basis of recognition. FEBS Lett (2008) 0.84
Systematic comparison of crystal and NMR protein structures deposited in the protein data bank. Open Biochem J (2010) 0.84
Heterologous overexpression of Glomerella cingulata FAD-dependent glucose dehydrogenase in Escherichia coli and Pichia pastoris. Microb Cell Fact (2011) 0.84
How many packing contacts are observed in protein crystals? J Struct Biol (2012) 0.83
Functional analysis of the lysis genes of Staphylococcus aureus phage P68 in Escherichia coli. Microbiology (2005) 0.83
Temperature-dependent stability and translation of Escherichia coli ompA mRNA. Biochem Biophys Res Commun (2003) 0.83
Progress in the PRIDE technique for rapidly comparing protein three-dimensional structures. BMC Res Notes (2008) 0.83
Study of E. coli Hfq's RNA annealing acceleration and duplex destabilization activities using substrates with different GC-contents. Nucleic Acids Res (2012) 0.83
Sulfolobus solfataricus translation initiation factor 1 stimulates translation initiation complex formation. RNA (2006) 0.82
Temperature-dependent translation of leaderless and canonical mRNAs in Escherichia coli. FEMS Microbiol Lett (2002) 0.82
Transcriptional regulation of nitrate assimilation in Pseudomonas aeruginosa occurs via transcriptional antitermination within the nirBD-PA1779-cobA operon. Microbiology (2012) 0.82
Translation initiation in the crenarchaeon Sulfolobus solfataricus: eukaryotic features but bacterial route. Biochem Soc Trans (2013) 0.82
Myopodin is an F-actin bundling protein with multiple independent actin-binding regions. J Muscle Res Cell Motil (2012) 0.82
Oxidative folding intermediates with nonnative disulfide bridges between adjacent cysteine residues. Proc Natl Acad Sci U S A (2003) 0.81
The Pseudomonas aeruginosa catabolite repression control protein Crc is devoid of RNA binding activity. PLoS One (2013) 0.81
Synthesis, Structure, and Reactivity of Model Complexes of Copper Nitrite Reductase. Inorg Chem (1996) 0.81
Characterization of the kinetics of RNA annealing and strand displacement activities of the E. coli DEAD-box helicase CsdA. RNA Biol (2013) 0.81
RNA chaperone activity of translation initiation factor IF1. Biochimie (2006) 0.80
Alterations of the transcriptome of Sulfolobus acidocaldarius by exoribonuclease aCPSF2. PLoS One (2013) 0.79
Structural portrait of filamin interaction mechanisms. Curr Protein Pept Sci (2010) 0.79