Published in Mar Genomics on December 26, 2012
Characterization of a planctomycetal organelle: a novel bacterial microcompartment for the aerobic degradation of plant saccharides. Appl Environ Microbiol (2014) 1.06
Planctomycetes and macroalgae, a striking association. Front Microbiol (2014) 0.99
Verrucomicrobia are candidates for polysaccharide-degrading bacterioplankton in an arctic fjord of Svalbard. Appl Environ Microbiol (2014) 0.92
Stable-Isotope Probing Identifies Uncultured Planctomycetes as Primary Degraders of a Complex Heteropolysaccharide in Soil. Appl Environ Microbiol (2015) 0.86
Bioinformatic analyses of integral membrane transport proteins encoded within the genome of the planctomycetes species, Rhodopirellula baltica. Biochim Biophys Acta (2013) 0.83
Composition and enzymatic function of particle-associated and free-living bacteria: a coastal/offshore comparison. ISME J (2014) 0.83
Characterization of the first cultured representative of Verrucomicrobia subdivision 5 indicates the proposal of a novel phylum. ISME J (2016) 0.82
MetaSort untangles metagenome assembly by reducing microbial community complexity. Nat Commun (2017) 0.79
Pyrosequencing reveals the microbial communities in the Red Sea sponge Carteriospongia foliascens and their impressive shifts in abnormal tissues. Microb Ecol (2014) 0.79
Developing Techniques for the Utilization of Planctomycetes As Producers of Bioactive Molecules. Front Microbiol (2016) 0.77
Comparison of the compatible solute pool of two slightly halophilic planctomycetes species, Gimesia maris and Rubinisphaera brasiliensis. Extremophiles (2016) 0.76
Patterns of extracellular enzyme activities and microbial metabolism in an Arctic fjord of Svalbard and in the northern Gulf of Mexico: contrasts in carbon processing by pelagic microbial communities. Front Microbiol (2013) 0.76
Untangling Genomes of Novel Planctomycetal and Verrucomicrobial Species from Monterey Bay Kelp Forest Metagenomes by Refined Binning. Front Microbiol (2017) 0.75
Genome Analysis of Planctomycetes Inhabiting Blades of the Red Alga Porphyra umbilicalis. PLoS One (2016) 0.75
Different Types of Diatom-Derived Extracellular Polymeric Substances Drive Changes in Heterotrophic Bacterial Communities from Intertidal Sediments. Front Microbiol (2017) 0.75
Matching the Diversity of Sulfated Biomolecules: Creation of a Classification Database for Sulfatases Reflecting Their Substrate Specificity. PLoS One (2016) 0.75
An alternative polysaccharide uptake mechanism of marine bacteria. ISME J (2017) 0.75
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res (2007) 35.65
The minimum information about a genome sequence (MIGS) specification. Nat Biotechnol (2008) 31.04
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res (2012) 19.48
The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains. Syst Appl Microbiol (2008) 8.21
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nat Biotechnol (2011) 7.53
SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes. Bioinformatics (2012) 6.40
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Res (2012) 6.21
Symbiosis insights through metagenomic analysis of a microbial consortium. Nature (2006) 5.04
TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences. BMC Bioinformatics (2004) 4.67
Application of tetranucleotide frequencies for the assignment of genomic fragments. Environ Microbiol (2004) 4.12
Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom. Science (2012) 4.11
The Genomic Standards Consortium. PLoS Biol (2011) 3.99
Whole genome analysis of the marine Bacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter. Environ Microbiol (2006) 3.79
Laying the foundation for a Genomic Rosetta Stone: creating information hubs through the use of consensus identifiers. OMICS (2008) 3.71
Megx.net--database resources for marine ecological genomics. Nucleic Acids Res (2006) 3.09
A standard MIGS/MIMS compliant XML Schema: toward the development of the Genomic Contextual Data Markup Language (GCDML). OMICS (2008) 2.82
Insights into the genome of large sulfur bacteria revealed by analysis of single filaments. PLoS Biol (2007) 2.69
Release LTPs104 of the All-Species Living Tree. Syst Appl Microbiol (2011) 2.46
Predominant archaea in marine sediments degrade detrital proteins. Nature (2013) 2.41
Total biosynthesis of hydrocortisone from a simple carbon source in yeast. Nat Biotechnol (2003) 2.18
Megx.net: integrated database resource for marine ecological genomics. Nucleic Acids Res (2009) 2.12
Toward a standards-compliant genomic and metagenomic publication record. OMICS (2008) 2.11
A conspicuous nickel protein in microbial mats that oxidize methane anaerobically. Nature (2003) 2.10
Comparative sequence analysis and oligonucleotide probe design based on 23S rRNA genes of Alphaproteobacteria from North Sea bacterioplankton. Syst Appl Microbiol (2004) 1.91
Meeting Report from the Genomic Standards Consortium (GSC) Workshops 6 and 7. Stand Genomic Sci (2009) 1.89
The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks. Nucleic Acids Res (2013) 1.85
Comparative genome analysis of four magnetotactic bacteria reveals a complex set of group-specific genes implicated in magnetosome biomineralization and function. J Bacteriol (2007) 1.80
Ecology of marine Bacteroidetes: a comparative genomics approach. ISME J (2013) 1.76
Bacterial diversity and biogeography in deep-sea surface sediments of the South Atlantic Ocean. ISME J (2009) 1.74
Optimization strategies for DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probes. Appl Environ Microbiol (2003) 1.70
Meeting report: the fifth Genomic Standards Consortium (GSC) workshop. OMICS (2008) 1.66
Single-cell genomics reveals the lifestyle of Poribacteria, a candidate phylum symbiotically associated with marine sponges. ISME J (2010) 1.66
Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses. Syst Appl Microbiol (2010) 1.58
Metagenome and mRNA expression analyses of anaerobic methanotrophic archaea of the ANME-1 group. Environ Microbiol (2009) 1.53
The genomic standards consortium: bringing standards to life for microbial ecology. ISME J (2011) 1.52
Characterization of a marine gammaproteobacterium capable of aerobic anoxygenic photosynthesis. Proc Natl Acad Sci U S A (2007) 1.51
Current opportunities and challenges in microbial metagenome analysis--a bioinformatic perspective. Brief Bioinform (2012) 1.50
A standard operating procedure for phylogenetic inference (SOPPI) using (rRNA) marker genes. Syst Appl Microbiol (2008) 1.48
Effects of deletion of genes encoding Fe-only hydrogenase of Desulfovibrio vulgaris Hildenborough on hydrogen and lactate metabolism. J Bacteriol (2002) 1.42
Functional analysis of the magnetosome island in Magnetospirillum gryphiswaldense: the mamAB operon is sufficient for magnetite biomineralization. PLoS One (2011) 1.38
Genome and physiology of a model Epsilonproteobacterium responsible for sulfide detoxification in marine oxygen depletion zones. Proc Natl Acad Sci U S A (2011) 1.35
Microbiota from the distal guts of lean and obese adolescents exhibit partial functional redundancy besides clear differences in community structure. Environ Microbiol (2012) 1.29
JCoast - a biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes. BMC Bioinformatics (2008) 1.28
Genomic content of uncultured Bacteroidetes from contrasting oceanic provinces in the North Atlantic Ocean. Environ Microbiol (2011) 1.28
The genome of the alga-associated marine flavobacterium Formosa agariphila KMM 3901T reveals a broad potential for degradation of algal polysaccharides. Appl Environ Microbiol (2013) 1.22
MetaBar - a tool for consistent contextual data acquisition and standards compliant submission. BMC Bioinformatics (2010) 1.20
Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains. ISME J (2010) 1.17
The founding charter of the Genomic Observatories Network. Gigascience (2014) 1.16
Discrimination between live and dead cellsin bacterial communities from environmental water samples analyzed by 454 pyrosequencing. Int Microbiol (2010) 1.15
Complete genome sequence of Marinobacter adhaerens type strain (HP15), a diatom-interacting marine microorganism. Stand Genomic Sci (2010) 1.14
Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide. Environ Microbiol (2009) 1.14
Roseobacter clade bacteria are abundant in coastal sediments and encode a novel combination of sulfur oxidation genes. ISME J (2012) 1.13
Microbial and chemical characterization of underwater fresh water springs in the Dead Sea. PLoS One (2012) 1.11
Anaerobic degradation of ethylbenzene by a new type of marine sulfate-reducing bacterium. Appl Environ Microbiol (2003) 1.11
Meeting Report from the Genomic Standards Consortium (GSC) Workshop 9. Stand Genomic Sci (2010) 1.10
Biogeography and phylogeny of the NOR5/OM60 clade of Gammaproteobacteria. Syst Appl Microbiol (2009) 1.10
Transcriptional organization and regulation of magnetosome operons in Magnetospirillum gryphiswaldense. Appl Environ Microbiol (2006) 1.10
Insights into the genomes of archaea mediating the anaerobic oxidation of methane. Environ Microbiol (2005) 1.10
Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Special Interest Group at ISMB 2009. Stand Genomic Sci (2009) 1.10
Genomics in marine monitoring: new opportunities for assessing marine health status. Mar Pollut Bull (2013) 1.09
Ecogenomics and genome landscapes of marine Pseudoalteromonas phage H105/1. ISME J (2010) 1.09
Proceedings of the international workshop on Ribosomal RNA technology, April 7-9, 2008, Bremen, Germany. Syst Appl Microbiol (2008) 1.08
Unveiling microbial life in the new deep-sea hypersaline Lake Thetis. Part II: a metagenomic study. Environ Microbiol (2011) 1.08
Phylogenetic diversity and metagenomics of candidate division OP3. Environ Microbiol (2010) 1.06
Bacterial diversity and community structure in polygonal tundra soils from Samoylov Island, Lena Delta, Siberia. Int Microbiol (2008) 1.06
Clustered genes related to sulfate respiration in uncultured prokaryotes support the theory of their concomitant horizontal transfer. J Bacteriol (2005) 1.05
The genus Pseudovibrio contains metabolically versatile bacteria adapted for symbiosis. Environ Microbiol (2013) 1.02
Alkaliflexus imshenetskii gen. nov. sp. nov., a new alkaliphilic gliding carbohydrate-fermenting bacterium with propionate formation from a soda lake. Arch Microbiol (2004) 1.01
The enzymatic asymmetric conjugate umpolung reaction. Angew Chem Int Ed Engl (2010) 1.01
Application and validation of DNA microarrays for the 16S rRNA-based analysis of marine bacterioplankton. Environ Microbiol (2004) 1.01
Analysis of N-acetylglucosamine metabolism in the marine bacterium Pirellula sp. strain 1 by a proteomic approach. Proteomics (2002) 1.01
Characterization of Planctomyces limnophilus and development of genetic tools for its manipulation establish it as a model species for the phylum Planctomycetes. Appl Environ Microbiol (2011) 1.01
Evaluation of the phylogenetic position of the planctomycete 'Rhodopirellula baltica' SH 1 by means of concatenated ribosomal protein sequences, DNA-directed RNA polymerase subunit sequences and whole genome trees. Int J Syst Evol Microbiol (2004) 1.00
Phylogenetic characterisation of picoplanktonic populations with high and low nucleic acid content in the North Atlantic Ocean. Syst Appl Microbiol (2011) 1.00
Practical application of self-organizing maps to interrelate biodiversity and functional data in NGS-based metagenomics. ISME J (2010) 1.00
The importance of a highly active and DeltapH-regulated diatoxanthin epoxidase for the regulation of the PS II antenna function in diadinoxanthin cycle containing algae. J Plant Physiol (2005) 1.00
Laccase versus laccase-like multi-copper oxidase: a comparative study of similar enzymes with diverse substrate spectra. PLoS One (2013) 1.00
A DNA microarray platform based on direct detection of rRNA for characterization of freshwater sediment-related prokaryotic communities. Appl Environ Microbiol (2006) 0.99
Graphical representation of ribosomal RNA probe accessibility data using ARB software package. BMC Bioinformatics (2005) 0.97
Identification of proteins likely to be involved in morphogenesis, cell division, and signal transduction in Planctomycetes by comparative genomics. J Bacteriol (2012) 0.97
Enzyme-catalyzed protein crosslinking. Appl Microbiol Biotechnol (2012) 0.97
Psychrobacter nivimaris sp. nov., a heterotrophic bacterium attached to organic particles isolated from the South Atlantic (Antarctica). Syst Appl Microbiol (2004) 0.96
Transcriptional response of the model planctomycete Rhodopirellula baltica SH1(T) to changing environmental conditions. BMC Genomics (2009) 0.96
Sequencing orphan species initiative (SOS): Filling the gaps in the 16S rRNA gene sequence database for all species with validly published names. Syst Appl Microbiol (2013) 0.96