PubRank

Jian-Bing Fan

Author PubWeight™ 245.06‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 A second generation human haplotype map of over 3.1 million SNPs. Nature 2007 85.39
2 Genome-wide detection and characterization of positive selection in human populations. Nature 2007 17.27
3 High density DNA methylation array with single CpG site resolution. Genomics 2011 10.35
4 High-throughput DNA methylation profiling using universal bead arrays. Genome Res 2006 8.05
5 Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq. Genome Res 2011 6.90
6 Profiling alternative splicing on fiber-optic arrays. Nat Biotechnol 2002 3.94
7 Differential allelic expression in the human genome: a robust approach to identify genetic and epigenetic cis-acting mechanisms regulating gene expression. PLoS Genet 2008 3.92
8 High-throughput SNP genotyping on universal bead arrays. Mutat Res 2005 3.78
9 DNA methylation signatures within the human brain. Am J Hum Genet 2007 3.50
10 Decoding randomly ordered DNA arrays. Genome Res 2004 3.49
11 Epigenomic analysis detects widespread gene-body DNA hypomethylation in chronic lymphocytic leukemia. Nat Genet 2012 3.08
12 Functional analysis of human microtubule-based motor proteins, the kinesins and dyneins, in mitosis/cytokinesis using RNA interference. Mol Biol Cell 2005 3.04
13 Quantitative gene expression profiling in formalin-fixed, paraffin-embedded tissues using universal bead arrays. Am J Pathol 2004 3.04
14 Human embryonic stem cells have a unique epigenetic signature. Genome Res 2006 2.89
15 A highly informative SNP linkage panel for human genetic studies. Nat Methods 2004 2.74
16 microRNA-29a induces aberrant self-renewal capacity in hematopoietic progenitors, biased myeloid development, and acute myeloid leukemia. J Exp Med 2010 2.68
17 Combining clinical, pathology, and gene expression data to predict recurrence of hepatocellular carcinoma. Gastroenterology 2011 2.66
18 Comprehensive microRNA profiling reveals a unique human embryonic stem cell signature dominated by a single seed sequence. Stem Cells 2008 2.52
19 Integrative molecular analysis of intrahepatic cholangiocarcinoma reveals 2 classes that have different outcomes. Gastroenterology 2013 2.42
20 Gene-expression signature of vascular invasion in hepatocellular carcinoma. J Hepatol 2011 2.39
21 Whole-genome gene expression profiling of formalin-fixed, paraffin-embedded tissue samples. PLoS One 2009 2.21
22 Highly multiplexed and strand-specific single-cell RNA 5' end sequencing. Nat Protoc 2012 2.21
23 Sensitive ChIP-DSL technology reveals an extensive estrogen receptor alpha-binding program on human gene promoters. Proc Natl Acad Sci U S A 2007 2.17
24 GoldenGate assay for DNA methylation profiling. Methods Mol Biol 2009 2.15
25 Succinate dehydrogenase mutation underlies global epigenomic divergence in gastrointestinal stromal tumor. Cancer Discov 2013 2.11
26 Two-dimensional transcriptome profiling: identification of messenger RNA isoform signatures in prostate cancer from archived paraffin-embedded cancer specimens. Cancer Res 2006 2.11
27 New insights into the biology and origin of mature aggressive B-cell lymphomas by combined epigenomic, genomic, and transcriptional profiling. Blood 2008 1.97
28 Analysis of gene expression in stage I serous tumors identifies critical pathways altered in ovarian cancer. Gynecol Oncol 2009 1.82
29 Expression signatures that correlated with Gleason score and relapse in prostate cancer. Genomics 2007 1.78
30 Genome-wide mapping of allele-specific protein-DNA interactions in human cells. Nat Methods 2008 1.69
31 Large-scale profiling of archival lymph nodes reveals pervasive remodeling of the follicular lymphoma methylome. Cancer Res 2009 1.58
32 Unraveling epigenetic regulation in embryonic stem cells. Cell Stem Cell 2008 1.57
33 Highly sensitive and specific microRNA expression profiling using BeadArray technology. Nucleic Acids Res 2008 1.54
34 A comprehensive microarray-based DNA methylation study of 367 hematological neoplasms. PLoS One 2009 1.48
35 Whole-genome haplotyping by dilution, amplification, and sequencing. Proc Natl Acad Sci U S A 2013 1.44
36 APOBEC3B upregulation and genomic mutation patterns in serous ovarian carcinoma. Cancer Res 2013 1.43
37 Profiling alternatively spliced mRNA isoforms for prostate cancer classification. BMC Bioinformatics 2006 1.39
38 Genome-wide DNA methylation profiling. Wiley Interdiscip Rev Syst Biol Med 2010 1.37
39 Age-dependent brain gene expression and copy number anomalies in autism suggest distinct pathological processes at young versus mature ages. PLoS Genet 2012 1.37
40 The transcriptional architecture of early human hematopoiesis identifies multilevel control of lymphoid commitment. Nat Immunol 2013 1.35
41 Angiogenic mRNA and microRNA gene expression signature predicts a novel subtype of serous ovarian cancer. PLoS One 2012 1.31
42 Epigenetic specificity of loss of imprinting of the IGF2 gene in Wilms tumors. J Natl Cancer Inst 2007 1.29
43 Spatial analysis of arabidopsis thaliana gene expression in response to Turnip mosaic virus infection. Mol Plant Microbe Interact 2007 1.23
44 miR-1289 and "Zipcode"-like Sequence Enrich mRNAs in Microvesicles. Mol Ther Nucleic Acids 2012 1.18
45 Salicylic acid-dependent expression of host genes in compatible Arabidopsis-virus interactions. Plant Physiol 2005 1.13
46 Expression of an active tobacco mitogen-activated protein kinase kinase kinase enhances freezing tolerance in transgenic maize. Proc Natl Acad Sci U S A 2004 1.12
47 Low-level expression of miR-375 correlates with poor outcome and metastasis while altering the invasive properties of head and neck squamous cell carcinomas. Am J Pathol 2012 1.11
48 LTBP2 mutations cause Weill-Marchesani and Weill-Marchesani-like syndrome and affect disruptions in the extracellular matrix. Hum Mutat 2012 1.09
49 Evaluation of a new high-dimensional miRNA profiling platform. BMC Med Genomics 2009 1.08
50 Gene expression profiles in formalin-fixed, paraffin-embedded tissues obtained with a novel assay for microarray analysis. Clin Chem 2004 1.08
51 Quantitative expression profiling of RNA from formalin-fixed, paraffin-embedded tissues using randomly assembled bead arrays. Methods Mol Biol 2008 1.00
52 Allele-specific expression in the germline of patients with familial pancreatic cancer: an unbiased approach to cancer gene discovery. Cancer Biol Ther 2007 0.98
53 Bead array-based microrna expression profiling of peripheral blood and the impact of different RNA isolation approaches. J Mol Diagn 2010 0.98
54 Genetic and genomic analyses of RNA polymerase II-pausing factor in regulation of mammalian transcription and cell growth. J Biol Chem 2011 0.97
55 Epigenome-wide ovarian cancer analysis identifies a methylation profile differentiating clear-cell histology with epigenetic silencing of the HERG K+ channel. Hum Mol Genet 2013 0.97
56 Genomic profiling of 766 cancer-related genes in archived esophageal normal and carcinoma tissues. Int J Cancer 2008 0.95
57 Identification of disease-associated DNA methylation in B cells from Crohn's disease and ulcerative colitis patients. Dig Dis Sci 2012 0.92
58 Translational utility of next-generation sequencing. Genomics 2013 0.89
59 Salinomycin induces cell death and differentiation in head and neck squamous cell carcinoma stem cells despite activation of epithelial-mesenchymal transition and Akt. BMC Cancer 2012 0.88
60 Effect of PITX2 knockdown on transcriptome of primary human trabecular meshwork cell cultures. Mol Vis 2011 0.87
61 A methyl-deviator epigenotype of estrogen receptor-positive breast carcinoma is associated with malignant biology. Am J Pathol 2011 0.87
62 Preprocessing and Quality Control Strategies for Illumina DASL Assay-Based Brain Gene Expression Studies with Semi-Degraded Samples. Front Genet 2012 0.87
63 Nicotine promotes acquisition of stem cell and epithelial-to-mesenchymal properties in head and neck squamous cell carcinoma. PLoS One 2012 0.87
64 A genome-wide survey of highly expressed non-coding RNAs and biological validation of selected candidates in Agrobacterium tumefaciens. PLoS One 2013 0.85
65 FOXC1 in human trabecular meshwork cells is involved in regulatory pathway that includes miR-204, MEIS2, and ITGβ1. Exp Eye Res 2013 0.85
66 Expression profiling of formalin-fixed paraffin-embedded primary breast tumors using cancer-specific and whole genome gene panels on the DASL® platform. BMC Med Genomics 2010 0.84
67 Non-housekeeping genes expressed in human trabecular meshwork cell cultures. Mol Vis 2012 0.84
68 Gene expression profiling in formalin-fixed, paraffin-embedded tissues using the whole-genome DASL assay. Methods Mol Biol 2011 0.83
69 DNA methylation markers of surfactant proteins in lung cancer. Int J Oncol 2007 0.83
70 Identification and functional relevance of de novo DNA methylation in cancerous B-cell populations. J Cell Biochem 2010 0.83
71 Microarray-based DNA methylation analysis of imprinted loci in a patient with transient neonatal diabetes mellitus. Am J Med Genet A 2008 0.81
72 Genetic analysis and SOD1 mutation screening in Iranian amyotrophic lateral sclerosis patients. Neurobiol Aging 2012 0.80
73 Gene expression profiling of human whole blood samples with the Illumina WG-DASL assay. BMC Genomics 2011 0.79
74 Mutation in CYP27A1 identified in family with coronary artery disease. Eur J Med Genet 2013 0.78
75 miRNA expression profiling using Illumina Universal BeadChips. Methods Mol Biol 2012 0.78
76 Tobamovirus infection is independent of HSP101 mRNA induction and protein expression. Virus Res 2006 0.78
77 Manifestation of diffuse yellowish keratoderma on the palms and soles in autosomal recessive congenital ichthyosis patients may be indicative of mutations in NIPAL4. J Dermatol 2011 0.78
78 Genome-wide expression assay comparison across frozen and fixed postmortem brain tissue samples. BMC Genomics 2011 0.77
79 Challenges and opportunities for next-generation sequencing in companion diagnostics. Expert Rev Mol Diagn 2014 0.76
80 Regulation of adipose oestrogen output by mechanical stress. Nat Commun 2013 0.76