PubRank

K Bretonnel Cohen

Author PubWeight™ 72.41‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Sentiment Analysis of Suicide Notes: A Shared Task. Biomed Inform Insights 2012 8.27
2 Overview of BioCreative II gene normalization. Genome Biol 2008 5.05
3 Habitat-Lite: a GSC case study based on free text terms for environmental metadata. OMICS 2008 4.40
4 Biomedical language processing: what's beyond PubMed? Mol Cell 2006 4.27
5 Manual curation is not sufficient for annotation of genomic databases. Bioinformatics 2007 4.16
6 OpenDMAP: an open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression. BMC Bioinformatics 2008 2.81
7 Text mining and manual curation of chemical-gene-disease networks for the comparative toxicogenomics database (CTD). BMC Bioinformatics 2009 2.72
8 Implications of compositionality in the gene ontology for its curation and usage. Pac Symp Biocomput 2005 2.54
9 MutationFinder: a high-performance system for extracting point mutation mentions from text. Bioinformatics 2007 2.53
10 Text mining for the biocuration workflow. Database (Oxford) 2012 2.37
11 U-Compare: share and compare text mining tools with UIMA. Bioinformatics 2009 2.28
12 An open-source framework for large-scale, flexible evaluation of biomedical text mining systems. J Biomed Discov Collab 2008 2.07
13 BioCreAtIvE task1A: entity identification with a stochastic tagger. BMC Bioinformatics 2005 2.05
14 Concept annotation in the CRAFT corpus. BMC Bioinformatics 2012 1.94
15 Concept recognition for extracting protein interaction relations from biomedical text. Genome Biol 2008 1.93
16 Evaluation of lexical methods for detecting relationships between concepts from multiple ontologies. Pac Symp Biocomput 2006 1.90
17 An overview of the BioCreative 2012 Workshop Track III: interactive text mining task. Database (Oxford) 2013 1.82
18 Finding GeneRIFs via gene ontology annotations. Pac Symp Biocomput 2006 1.77
19 GeneRIF quality assurance as summary revision. Pac Symp Biocomput 2007 1.60
20 Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters. BMC Bioinformatics 2014 1.52
21 Ontology quality assurance through analysis of term transformations. Bioinformatics 2009 1.47
22 Intrinsic evaluation of text mining tools may not predict performance on realistic tasks. Pac Symp Biocomput 2008 1.40
23 The textual characteristics of traditional and Open Access scientific journals are similar. BMC Bioinformatics 2009 1.37
24 Corpus refactoring: a feasibility study. J Biomed Discov Collab 2007 1.29
25 BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. J Biomed Semantics 2014 1.12
26 Current issues in biomedical text mining and natural language processing. J Biomed Inform 2009 1.09
27 A fault model for ontology mapping, alignment, and linking systems. Pac Symp Biocomput 2007 1.03
28 Mining the pharmacogenomics literature--a survey of the state of the art. Brief Bioinform 2012 1.02
29 Rapid pattern development for concept recognition systems: application to point mutations. J Bioinform Comput Biol 2007 1.01
30 U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinformatics 2011 0.99
31 Exploring species-based strategies for gene normalization. IEEE/ACM Trans Comput Biol Bioinform 2010 0.97
32 TRANSLATING BIOLOGY: TEXT MINING TOOLS THAT WORK. Pac Symp Biocomput 2008 0.94
33 Themes in biomedical natural language processing: BioNLP08. BMC Bioinformatics 2008 0.83
34 Combining heterogenous data for prediction of disease related and pharmacogenes. Pac Symp Biocomput 2014 0.82
35 Improving precision in concept normalization. Pac Symp Biocomput 2018 0.75